data_5KPZ # _model_server_result.job_id kxf0Jw4n2ZAsnZlSpD3F9w _model_server_result.datetime_utc '2024-10-11 11:16:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kpz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5KPZ # _exptl.entry_id 5KPZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 299.215 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KPZ _cell.length_a 99.488 _cell.length_b 99.488 _cell.length_c 68.542 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KPZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -22.847333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O7 PAZ . A PAZ 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc2 C O2B ADP . A ADP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc3 D MG MG . A MG 403 1_555 E O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc4 D MG MG . A MG 403 1_555 E O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc5 D MG MG . A MG 403 1_555 E O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc6 D MG MG . A MG 403 1_555 E O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? # _chem_comp.formula 'C9 H18 N O8 P' _chem_comp.formula_weight 299.215 _chem_comp.id PAZ _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O8 P1 PAZ sing 281 n n O8 HO8 PAZ sing 282 n n O6 P1 PAZ doub 283 n n P1 O7 PAZ sing 284 n n P1 O2 PAZ sing 285 n n O7 HO7 PAZ sing 286 n n O2 C2 PAZ sing 287 n n C2 C1 PAZ sing 288 n n C2 H2 PAZ sing 289 n n C2 H2A PAZ sing 290 n n C4 C1 PAZ sing 291 n n C1 C5 PAZ sing 292 n n C1 C3 PAZ sing 293 n n C4 H4 PAZ sing 294 n n C4 H4A PAZ sing 295 n n C4 H4B PAZ sing 296 n n C3 H3 PAZ sing 297 n n C3 H3A PAZ sing 298 n n C3 H3B PAZ sing 299 n n C5 C6 PAZ sing 300 n n C5 O5' PAZ sing 301 n n C5 H5 PAZ sing 302 n n O5' HO5' PAZ sing 303 n n O6' C6 PAZ doub 304 n n C6 N PAZ sing 305 n n N C8 PAZ sing 306 n n N HN PAZ sing 307 n n C8 C9 PAZ sing 308 n n C8 H8 PAZ sing 309 n n C8 H8A PAZ sing 310 n n C9 C PAZ sing 311 n n C9 H9 PAZ sing 312 n n C9 H9A PAZ sing 313 n n O C PAZ doub 314 n n C OXT PAZ sing 315 n n OXT HOXT PAZ sing 316 n n # _atom_sites.entry_id 5KPZ _atom_sites.fract_transf_matrix[1][1] 0.010051 _atom_sites.fract_transf_matrix[1][2] 0.005803 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01459 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PAZ A 1 401 1 PAZ PAZ . C 3 ADP A 1 402 1 ADP ADP . D 4 MG A 1 403 1 MG MG . E 5 HOH A 1 501 2 HOH HOH . E 5 HOH A 2 502 7 HOH HOH . E 5 HOH A 3 503 24 HOH HOH . E 5 HOH A 4 504 40 HOH HOH . E 5 HOH A 5 505 21 HOH HOH . E 5 HOH A 6 506 42 HOH HOH . E 5 HOH A 7 507 18 HOH HOH . E 5 HOH A 8 508 4 HOH HOH . E 5 HOH A 9 509 38 HOH HOH . E 5 HOH A 10 510 16 HOH HOH . E 5 HOH A 11 511 26 HOH HOH . E 5 HOH A 12 512 10 HOH HOH . E 5 HOH A 13 513 1 HOH HOH . E 5 HOH A 14 514 45 HOH HOH . E 5 HOH A 15 515 5 HOH HOH . E 5 HOH A 16 516 46 HOH HOH . E 5 HOH A 17 517 20 HOH HOH . E 5 HOH A 18 518 6 HOH HOH . E 5 HOH A 19 519 3 HOH HOH . E 5 HOH A 20 520 8 HOH HOH . E 5 HOH A 21 521 36 HOH HOH . E 5 HOH A 22 522 30 HOH HOH . E 5 HOH A 23 523 37 HOH HOH . E 5 HOH A 24 524 11 HOH HOH . E 5 HOH A 25 525 50 HOH HOH . E 5 HOH A 26 526 52 HOH HOH . E 5 HOH A 27 527 48 HOH HOH . E 5 HOH A 28 528 29 HOH HOH . E 5 HOH A 29 529 41 HOH HOH . E 5 HOH A 30 530 31 HOH HOH . E 5 HOH A 31 531 28 HOH HOH . E 5 HOH A 32 532 32 HOH HOH . E 5 HOH A 33 533 43 HOH HOH . E 5 HOH A 34 534 34 HOH HOH . E 5 HOH A 35 535 44 HOH HOH . E 5 HOH A 36 536 33 HOH HOH . E 5 HOH A 37 537 51 HOH HOH . E 5 HOH A 38 538 27 HOH HOH . E 5 HOH A 39 539 54 HOH HOH . E 5 HOH A 40 540 17 HOH HOH . E 5 HOH A 41 541 53 HOH HOH . E 5 HOH A 42 542 39 HOH HOH . E 5 HOH A 43 543 13 HOH HOH . E 5 HOH A 44 544 35 HOH HOH . E 5 HOH A 45 545 19 HOH HOH . E 5 HOH A 46 546 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O8 PAZ . . . B 2 28.498 15.28 -2.345 0.97 79.27 ? O8 PAZ 401 A 1 HETATM 2 P P1 PAZ . . . B 2 29.682 14.327 -2.445 0.97 91.62 ? P1 PAZ 401 A 1 HETATM 3 O O6 PAZ . . . B 2 29.263 12.982 -3.042 0.97 77.87 ? O6 PAZ 401 A 1 HETATM 4 O O7 PAZ . . . B 2 30.245 14.108 -1.051 0.97 83.85 ? O7 PAZ 401 A 1 HETATM 5 O O2 PAZ . . . B 2 30.818 14.979 -3.362 0.97 89.96 ? O2 PAZ 401 A 1 HETATM 6 C C2 PAZ . . . B 2 30.579 15.287 -4.766 0.97 86.81 ? C2 PAZ 401 A 1 HETATM 7 C C1 PAZ . . . B 2 31.642 14.624 -5.657 0.97 86.17 ? C1 PAZ 401 A 1 HETATM 8 C C4 PAZ . . . B 2 31.546 15.189 -7.11 0.97 78.84 ? C4 PAZ 401 A 1 HETATM 9 C C3 PAZ . . . B 2 33.041 14.957 -5.09 0.97 79.05 ? C3 PAZ 401 A 1 HETATM 10 C C5 PAZ . . . B 2 31.366 13.074 -5.646 0.97 82.03 ? C5 PAZ 401 A 1 HETATM 11 O O5' PAZ . . . B 2 30.017 12.854 -5.897 0.97 77.57 ? O5' PAZ 401 A 1 HETATM 12 C C6 PAZ . . . B 2 32.172 12.285 -6.67 0.97 79.71 ? C6 PAZ 401 A 1 HETATM 13 O O6' PAZ . . . B 2 33.403 12.299 -6.67 0.97 78.33 ? O6' PAZ 401 A 1 HETATM 14 N N PAZ . . . B 2 31.444 11.474 -7.664 0.97 77.96 ? N PAZ 401 A 1 HETATM 15 C C8 PAZ . . . B 2 32.152 10.709 -8.662 0.97 78.31 ? C8 PAZ 401 A 1 HETATM 16 C C9 PAZ . . . B 2 32.229 11.532 -9.944 0.97 80.38 ? C9 PAZ 401 A 1 HETATM 17 C C PAZ . . . B 2 33.316 10.936 -10.833 0.97 83.28 ? C PAZ 401 A 1 HETATM 18 O O PAZ . . . B 2 33.068 10.631 -12.03 0.97 86.47 ? O PAZ 401 A 1 HETATM 19 O OXT PAZ . . . B 2 34.475 10.752 -10.35 0.97 83.67 ? OXT PAZ 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #