data_5KQ5
#
_model_server_result.job_id            -vJ7Q2wPElwlI2UiUbFJTA 
_model_server_result.datetime_utc      '2024-12-23 12:41:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kq5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":402}' 
#
_entry.id    5KQ5 
#
_exptl.entry_id    5KQ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5KQ5 
_cell.length_a            124.5 
_cell.length_b            124.5 
_cell.length_c            402.25 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KQ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 J N N 
? 7 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 173 A ARG 171 1_555 A N TPO 174 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? 
covale ? covale2 A C TPO 174 A TPO 172 1_555 A N SER 175 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 100 n n 
P O2P AMP sing 101 n n 
P O3P AMP sing 102 n n 
P O5' AMP sing 103 n n 
O2P HOP2 AMP sing 104 n n 
O3P HOP3 AMP sing 105 n n 
O5' C5' AMP sing 106 n n 
C5' C4' AMP sing 107 n n 
C5' "H5'1" AMP sing 108 n n 
C5' "H5'2" AMP sing 109 n n 
C4' O4' AMP sing 110 n n 
C4' C3' AMP sing 111 n n 
C4' H4' AMP sing 112 n n 
O4' C1' AMP sing 113 n n 
C3' O3' AMP sing 114 n n 
C3' C2' AMP sing 115 n n 
C3' H3' AMP sing 116 n n 
O3' HO3' AMP sing 117 n n 
C2' O2' AMP sing 118 n n 
C2' C1' AMP sing 119 n n 
C2' H2' AMP sing 120 n n 
O2' HO2' AMP sing 121 n n 
C1' N9 AMP sing 122 n n 
C1' H1' AMP sing 123 n n 
N9 C8 AMP sing 124 n y 
N9 C4 AMP sing 125 n y 
C8 N7 AMP doub 126 n y 
C8 H8 AMP sing 127 n n 
N7 C5 AMP sing 128 n y 
C5 C6 AMP sing 129 n y 
C5 C4 AMP doub 130 n y 
C6 N6 AMP sing 131 n n 
C6 N1 AMP doub 132 n y 
N6 HN61 AMP sing 133 n n 
N6 HN62 AMP sing 134 n n 
N1 C2 AMP sing 135 n y 
C2 N3 AMP doub 136 n y 
C2 H2 AMP sing 137 n n 
N3 C4 AMP sing 138 n y 
#
_atom_sites.entry_id                     5KQ5 
_atom_sites.fract_transf_matrix[1][1]    0.008032 
_atom_sites.fract_transf_matrix[1][2]    0.004637 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009275 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002486 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 STU A 1 601 1549 STU STU . 
E 5 6VT A 1 602 1 6VT PFE . 
F 6 CL A 1 603 1 CL CL . 
G 6 CL A 1 604 2 CL CL . 
H 6 CL A 1 605 3 CL CL . 
I 6 CL A 1 606 4 CL CL . 
J 7 AMP C 1 401 1 AMP AMP . 
K 7 AMP C 1 402 2 AMP AMP . 
L 8 ADP C 1 403 0 ADP ADP . 
M 9 SO4 C 1 404 5 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . K 7 23.276 -45.305 21.207 1 170.86 ? P AMP 402 C 1 
HETATM 2 O O1P AMP . . . K 7 23.783 -45.879 19.871 1 170.33 ? O1P AMP 402 C 1 
HETATM 3 O O2P AMP . . . K 7 22.571 -43.975 21.051 1 168.05 ? O2P AMP 402 C 1 
HETATM 4 O O3P AMP . . . K 7 24.478 -45.244 22.142 1 175.27 ? O3P AMP 402 C 1 
HETATM 5 O O5' AMP . . . K 7 22.343 -46.425 21.862 1 170.43 ? O5' AMP 402 C 1 
HETATM 6 C C5' AMP . . . K 7 21.321 -46.294 22.87 1 172.08 ? C5' AMP 402 C 1 
HETATM 7 C C4' AMP . . . K 7 21.395 -47.404 23.891 1 175.02 ? C4' AMP 402 C 1 
HETATM 8 O O4' AMP . . . K 7 22.687 -47.384 24.54 1 180.02 ? O4' AMP 402 C 1 
HETATM 9 C C3' AMP . . . K 7 20.354 -47.34 25.01 1 175.24 ? C3' AMP 402 C 1 
HETATM 10 O O3' AMP . . . K 7 19.854 -48.628 25.355 1 175.06 ? O3' AMP 402 C 1 
HETATM 11 C C2' AMP . . . K 7 21.116 -46.658 26.151 1 179.26 ? C2' AMP 402 C 1 
HETATM 12 O O2' AMP . . . K 7 20.649 -47.003 27.45 1 180.77 ? O2' AMP 402 C 1 
HETATM 13 C C1' AMP . . . K 7 22.536 -47.184 25.935 1 183.16 ? C1' AMP 402 C 1 
HETATM 14 N N9 AMP . . . K 7 23.589 -46.279 26.401 1 187.64 ? N9 AMP 402 C 1 
HETATM 15 C C8 AMP . . . K 7 24.063 -45.159 25.766 1 187.84 ? C8 AMP 402 C 1 
HETATM 16 N N7 AMP . . . K 7 24.975 -44.506 26.443 1 191.23 ? N7 AMP 402 C 1 
HETATM 17 C C5 AMP . . . K 7 25.119 -45.25 27.603 1 193.77 ? C5 AMP 402 C 1 
HETATM 18 C C6 AMP . . . K 7 25.942 -45.091 28.74 1 198.05 ? C6 AMP 402 C 1 
HETATM 19 N N6 AMP . . . K 7 26.816 -44.094 28.89 1 200.68 ? N6 AMP 402 C 1 
HETATM 20 N N1 AMP . . . K 7 25.833 -46.009 29.728 1 200.46 ? N1 AMP 402 C 1 
HETATM 21 C C2 AMP . . . K 7 24.963 -47.015 29.581 1 198.37 ? C2 AMP 402 C 1 
HETATM 22 N N3 AMP . . . K 7 24.143 -47.272 28.556 1 193.97 ? N3 AMP 402 C 1 
HETATM 23 C C4 AMP . . . K 7 24.271 -46.346 27.592 1 191.9 ? C4 AMP 402 C 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#