data_5KQ5 # _model_server_result.job_id SfdF49bk1_zXDpgG1wjYSA _model_server_result.datetime_utc '2024-12-23 12:24:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kq5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 5KQ5 # _exptl.entry_id 5KQ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KQ5 _cell.length_a 124.5 _cell.length_b 124.5 _cell.length_c 402.25 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 173 A ARG 171 1_555 A N TPO 174 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale2 A C TPO 174 A TPO 172 1_555 A N SER 175 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 418 n n O4 C21 STU sing 419 n n C25 C24 STU sing 420 n n C25 N3 STU sing 421 n n C25 H25 STU sing 422 n n C24 C23 STU sing 423 n n C24 H241 STU sing 424 n n C24 H242 STU sing 425 n n C23 C22 STU sing 426 n n C23 N4 STU sing 427 n n C23 H23 STU sing 428 n n C22 C21 STU sing 429 n n C22 O6 STU sing 430 n n C22 H22 STU sing 431 n n C21 C26 STU sing 432 n n C21 N2 STU sing 433 n n C26 H261 STU sing 434 n n C26 H262 STU sing 435 n n C26 H263 STU sing 436 n n N2 C18 STU sing 437 n y N2 C17 STU sing 438 n y C18 C19 STU doub 439 n y C18 C11 STU sing 440 n y C19 C6 STU sing 441 n y C19 N3 STU sing 442 n y C6 C7 STU doub 443 n y C6 C5 STU sing 444 n y C7 C10 STU sing 445 n y C7 C8 STU sing 446 n n C10 C11 STU doub 447 n y C10 C9 STU sing 448 n n C11 C12 STU sing 449 n y C12 C17 STU doub 450 n y C12 C13 STU sing 451 n y C17 C16 STU sing 452 n y C16 C15 STU doub 453 n y C16 H16 STU sing 454 n n C15 C14 STU sing 455 n y C15 H15 STU sing 456 n n C14 C13 STU doub 457 n y C14 H14 STU sing 458 n n C13 H13 STU sing 459 n n C9 N1 STU sing 460 n n C9 H91 STU sing 461 n n C9 H92 STU sing 462 n n N1 C8 STU sing 463 n n N1 HN1 STU sing 464 n n C8 O5 STU doub 465 n n C5 C20 STU doub 466 n y C5 C4 STU sing 467 n y C20 C1 STU sing 468 n y C20 N3 STU sing 469 n y C1 C2 STU doub 470 n y C1 H1 STU sing 471 n n C2 C3 STU sing 472 n y C2 H2 STU sing 473 n n C3 C4 STU doub 474 n y C3 H3 STU sing 475 n n C4 H4 STU sing 476 n n O6 C27 STU sing 477 n n C27 H271 STU sing 478 n n C27 H272 STU sing 479 n n C27 H273 STU sing 480 n n N4 C28 STU sing 481 n n N4 HN4 STU sing 482 n n C28 H281 STU sing 483 n n C28 H282 STU sing 484 n n C28 H283 STU sing 485 n n # _atom_sites.entry_id 5KQ5 _atom_sites.fract_transf_matrix[1][1] 0.008032 _atom_sites.fract_transf_matrix[1][2] 0.004637 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 STU A 1 601 1549 STU STU . E 5 6VT A 1 602 1 6VT PFE . F 6 CL A 1 603 1 CL CL . G 6 CL A 1 604 2 CL CL . H 6 CL A 1 605 3 CL CL . I 6 CL A 1 606 4 CL CL . J 7 AMP C 1 401 1 AMP AMP . K 7 AMP C 1 402 2 AMP AMP . L 8 ADP C 1 403 0 ADP ADP . M 9 SO4 C 1 404 5 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . D 4 42.475 -86.529 -26.593 1 68.47 ? O4 STU 601 A 1 HETATM 2 C C25 STU . . . D 4 43.026 -87.525 -25.719 1 67.18 ? C25 STU 601 A 1 HETATM 3 C C24 STU . . . D 4 42.043 -88.086 -24.69 1 67.83 ? C24 STU 601 A 1 HETATM 4 C C23 STU . . . D 4 40.624 -87.617 -24.952 1 69.75 ? C23 STU 601 A 1 HETATM 5 C C22 STU . . . D 4 40.632 -86.099 -24.983 1 69.84 ? C22 STU 601 A 1 HETATM 6 C C21 STU . . . D 4 41.577 -85.551 -26.056 1 68.68 ? C21 STU 601 A 1 HETATM 7 C C26 STU . . . D 4 40.732 -85.091 -27.241 1 68.82 ? C26 STU 601 A 1 HETATM 8 N N2 STU . . . D 4 42.342 -84.391 -25.499 1 69.58 ? N2 STU 601 A 1 HETATM 9 C C18 STU . . . D 4 43.566 -84.495 -24.923 1 69.71 ? C18 STU 601 A 1 HETATM 10 C C19 STU . . . D 4 44.445 -85.683 -24.715 1 69.04 ? C19 STU 601 A 1 HETATM 11 C C6 STU . . . D 4 45.743 -85.511 -24.063 1 71.52 ? C6 STU 601 A 1 HETATM 12 C C7 STU . . . D 4 46.128 -84.14 -23.638 1 72.12 ? C7 STU 601 A 1 HETATM 13 C C10 STU . . . D 4 45.303 -82.95 -23.822 1 70.98 ? C10 STU 601 A 1 HETATM 14 C C11 STU . . . D 4 43.981 -83.148 -24.489 1 70.51 ? C11 STU 601 A 1 HETATM 15 C C12 STU . . . D 4 42.872 -82.268 -24.863 1 70.62 ? C12 STU 601 A 1 HETATM 16 C C17 STU . . . D 4 41.837 -83.118 -25.505 1 70.4 ? C17 STU 601 A 1 HETATM 17 C C16 STU . . . D 4 40.679 -82.501 -25.951 1 70.79 ? C16 STU 601 A 1 HETATM 18 C C15 STU . . . D 4 40.544 -81.122 -25.773 1 72.48 ? C15 STU 601 A 1 HETATM 19 C C14 STU . . . D 4 41.534 -80.342 -25.163 1 73.57 ? C14 STU 601 A 1 HETATM 20 C C13 STU . . . D 4 42.72 -80.904 -24.695 1 71.8 ? C13 STU 601 A 1 HETATM 21 C C9 STU . . . D 4 45.979 -81.775 -23.293 1 70.75 ? C9 STU 601 A 1 HETATM 22 N N1 STU . . . D 4 47.276 -82.287 -22.764 1 71.89 ? N1 STU 601 A 1 HETATM 23 C C8 STU . . . D 4 47.338 -83.629 -22.97 1 72.73 ? C8 STU 601 A 1 HETATM 24 O O5 STU . . . D 4 48.334 -84.364 -22.624 1 73.54 ? O5 STU 601 A 1 HETATM 25 C C5 STU . . . D 4 46.316 -86.846 -24.026 1 70.7 ? C5 STU 601 A 1 HETATM 26 C C20 STU . . . D 4 45.314 -87.737 -24.661 1 67.9 ? C20 STU 601 A 1 HETATM 27 C C1 STU . . . D 4 45.638 -89.084 -24.744 1 66.83 ? C1 STU 601 A 1 HETATM 28 C C2 STU . . . D 4 46.863 -89.521 -24.235 1 67.35 ? C2 STU 601 A 1 HETATM 29 C C3 STU . . . D 4 47.786 -88.653 -23.642 1 68.96 ? C3 STU 601 A 1 HETATM 30 C C4 STU . . . D 4 47.527 -87.29 -23.525 1 70.28 ? C4 STU 601 A 1 HETATM 31 N N3 STU . . . D 4 44.229 -86.982 -25.042 1 67.17 ? N3 STU 601 A 1 HETATM 32 O O6 STU . . . D 4 40.989 -85.622 -23.684 1 71.85 ? O6 STU 601 A 1 HETATM 33 C C27 STU . . . D 4 39.968 -84.798 -23.125 1 71.83 ? C27 STU 601 A 1 HETATM 34 N N4 STU . . . D 4 39.735 -88.097 -23.913 1 72.65 ? N4 STU 601 A 1 HETATM 35 C C28 STU . . . D 4 38.299 -87.969 -24.073 1 74.09 ? C28 STU 601 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #