data_5KQ5 # _model_server_result.job_id 9bfzp6VYv2FM2aVCjQxYwQ _model_server_result.datetime_utc '2024-12-23 12:35:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kq5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 5KQ5 # _exptl.entry_id 5KQ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 341.788 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-chloranyl-5-[4-(1-oxidanylcyclobutyl)phenyl]-1~{H}-indole-3-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KQ5 _cell.length_a 124.5 _cell.length_b 124.5 _cell.length_c 402.25 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 173 A ARG 171 1_555 A N TPO 174 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale2 A C TPO 174 A TPO 172 1_555 A N SER 175 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C19 H16 Cl N O3' _chem_comp.formula_weight 341.788 _chem_comp.id 6VT _chem_comp.mon_nstd_flag . _chem_comp.name '6-chloranyl-5-[4-(1-oxidanylcyclobutyl)phenyl]-1~{H}-indole-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C17 6VT sing 1 n n C16 C15 6VT sing 2 n n C10 C11 6VT doub 3 n y C10 C9 6VT sing 4 n y C11 C12 6VT sing 5 n y N1 C6 6VT sing 6 n y N1 C7 6VT sing 7 n y C3 C6 6VT doub 8 n y C3 C2 6VT sing 9 n y C6 C5 6VT sing 10 n y C7 C8 6VT doub 11 n y CL1 C2 6VT sing 12 n n C17 C18 6VT sing 13 n n C2 C1 6VT doub 14 n y C5 C8 6VT sing 15 n y C5 C4 6VT doub 16 n y C8 C19 6VT sing 17 n n C1 C4 6VT sing 18 n y C1 C9 6VT sing 19 n n C19 O3 6VT doub 20 n n C19 O2 6VT sing 21 n n C9 C14 6VT doub 22 n y C12 C15 6VT sing 23 n n C12 C13 6VT doub 24 n y C15 C18 6VT sing 25 n n C15 O1 6VT sing 26 n n C14 C13 6VT sing 27 n y C4 H1 6VT sing 28 n n C7 H2 6VT sing 29 n n C13 H3 6VT sing 30 n n C18 H4 6VT sing 31 n n C18 H5 6VT sing 32 n n C16 H6 6VT sing 33 n n C16 H7 6VT sing 34 n n C3 H8 6VT sing 35 n n N1 H9 6VT sing 36 n n C10 H10 6VT sing 37 n n C11 H11 6VT sing 38 n n C14 H12 6VT sing 39 n n C17 H13 6VT sing 40 n n C17 H14 6VT sing 41 n n O1 H15 6VT sing 42 n n O2 H16 6VT sing 43 n n # _atom_sites.entry_id 5KQ5 _atom_sites.fract_transf_matrix[1][1] 0.008032 _atom_sites.fract_transf_matrix[1][2] 0.004637 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 STU A 1 601 1549 STU STU . E 5 6VT A 1 602 1 6VT PFE . F 6 CL A 1 603 1 CL CL . G 6 CL A 1 604 2 CL CL . H 6 CL A 1 605 3 CL CL . I 6 CL A 1 606 4 CL CL . J 7 AMP C 1 401 1 AMP AMP . K 7 AMP C 1 402 2 AMP AMP . L 8 ADP C 1 403 0 ADP ADP . M 9 SO4 C 1 404 5 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 6VT . . . E 5 45.265 -80.792 -39.409 1 60.24 ? C4 6VT 602 A 1 HETATM 2 C C7 6VT . . . E 5 42.248 -78.786 -39.667 1 62.97 ? C7 6VT 602 A 1 HETATM 3 C C6 6VT . . . E 5 44.468 -78.541 -39.694 1 60.01 ? C6 6VT 602 A 1 HETATM 4 C C9 6VT . . . E 5 47.69 -81.339 -39.317 1 64.08 ? C9 6VT 602 A 1 HETATM 5 C C13 6VT . . . E 5 49.812 -82.03 -38.376 1 65.11 ? C13 6VT 602 A 1 HETATM 6 C C8 6VT . . . E 5 42.759 -80.052 -39.499 1 64.89 ? C8 6VT 602 A 1 HETATM 7 C C18 6VT . . . E 5 52.235 -83.829 -38.454 1 72.69 ? C18 6VT 602 A 1 HETATM 8 C C16 6VT . . . E 5 51.429 -84.908 -40.136 1 72.42 ? C16 6VT 602 A 1 HETATM 9 C C19 6VT . . . E 5 42.016 -81.326 -39.346 1 70.96 ? C19 6VT 602 A 1 HETATM 10 C C1 6VT . . . E 5 46.589 -80.343 -39.453 1 60.35 ? C1 6VT 602 A 1 HETATM 11 C C2 6VT . . . E 5 46.809 -78.968 -39.62 1 58.9 ? C2 6VT 602 A 1 HETATM 12 C C3 6VT . . . E 5 45.767 -78.069 -39.745 1 57.94 ? C3 6VT 602 A 1 HETATM 13 C C5 6VT . . . E 5 44.198 -79.912 -39.521 1 61.11 ? C5 6VT 602 A 1 HETATM 14 N N1 6VT . . . E 5 43.264 -77.882 -39.782 1 61.79 ? N1 6VT 602 A 1 HETATM 15 C C10 6VT . . . E 5 47.646 -82.556 -39.996 1 66.74 ? C10 6VT 602 A 1 HETATM 16 C C11 6VT . . . E 5 48.656 -83.49 -39.861 1 66.51 ? C11 6VT 602 A 1 HETATM 17 C C12 6VT . . . E 5 49.753 -83.248 -39.045 1 66.32 ? C12 6VT 602 A 1 HETATM 18 C C14 6VT . . . E 5 48.797 -81.097 -38.502 1 64.23 ? C14 6VT 602 A 1 HETATM 19 CL CL1 6VT . . . E 5 48.422 -78.348 -39.653 1 62.52 ? CL1 6VT 602 A 1 HETATM 20 C C15 6VT . . . E 5 50.821 -84.32 -38.839 1 69.92 ? C15 6VT 602 A 1 HETATM 21 C C17 6VT . . . E 5 52.838 -84.597 -39.628 1 73.36 ? C17 6VT 602 A 1 HETATM 22 O O1 6VT . . . E 5 50.35 -85.404 -38.034 1 69.68 ? O1 6VT 602 A 1 HETATM 23 O O2 6VT . . . E 5 42.604 -82.415 -39.253 1 72.75 ? O2 6VT 602 A 1 HETATM 24 O O3 6VT . . . E 5 40.703 -81.207 -39.342 1 73.06 ? O3 6VT 602 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #