data_5KQD # _model_server_result.job_id 6g6-ZPPL5ypkYmNtR3SUzA _model_server_result.datetime_utc '2024-10-11 13:23:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5KQD # _exptl.entry_id 5KQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 1005.943 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Palmitoyl-CoA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KQD _cell.length_a 121.707 _cell.length_b 121.707 _cell.length_c 121.707 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 195 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,3 A,B,C 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 121.707 0 3 'crystal symmetry operation' 3_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 0 0 243.414 4 'crystal symmetry operation' 4_567 x,-y+1,-z+2 1 0 0 0 -1 0 0 0 -1 0 121.707 243.414 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C37 H66 N7 O17 P3 S' _chem_comp.formula_weight 1005.943 _chem_comp.id PKZ _chem_comp.mon_nstd_flag . _chem_comp.name Palmitoyl-CoA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O9A P3B PKZ doub 258 n n O2B C2B PKZ sing 259 n n P3B O3B PKZ sing 260 n n P3B O7A PKZ sing 261 n n P3B O8A PKZ sing 262 n n O3B C3B PKZ sing 263 n n C2B C3B PKZ sing 264 n n C2B C1B PKZ sing 265 n n C3B C4B PKZ sing 266 n n C8A N7A PKZ doub 267 n y C8A N9A PKZ sing 268 n y C1B N9A PKZ sing 269 n n C1B O4B PKZ sing 270 n n N7A C5A PKZ sing 271 n y C4B C5B PKZ sing 272 n n C4B O4B PKZ sing 273 n n N9A C4A PKZ sing 274 n y C5B O5B PKZ sing 275 n n C5A C4A PKZ doub 276 n y C5A C6A PKZ sing 277 n y C16 C15 PKZ sing 278 n n C4A N3A PKZ sing 279 n y N6A C6A PKZ sing 280 n n C6A N1A PKZ doub 281 n y O5B P1A PKZ sing 282 n n N3A C2A PKZ doub 283 n y O5A P2A PKZ doub 284 n n O4A P2A PKZ sing 285 n n C14 C15 PKZ sing 286 n n C14 C13 PKZ sing 287 n n N1A C2A PKZ sing 288 n y P2A O3A PKZ sing 289 n n P2A O6A PKZ sing 290 n n P1A O3A PKZ sing 291 n n P1A O2A PKZ doub 292 n n P1A O1A PKZ sing 293 n n C13 C12 PKZ sing 294 n n O6A CCP PKZ sing 295 n n C12 C11 PKZ sing 296 n n CEP CBP PKZ sing 297 n n CCP CBP PKZ sing 298 n n CAP CBP PKZ sing 299 n n CAP OAP PKZ sing 300 n n CAP C9P PKZ sing 301 n n CBP CDP PKZ sing 302 n n O9P C9P PKZ doub 303 n n C11 C10 PKZ sing 304 n n C9P N8P PKZ sing 305 n n C10 C9 PKZ sing 306 n n N8P C7P PKZ sing 307 n n C9 C8 PKZ sing 308 n n C7P C6P PKZ sing 309 n n C6P C5P PKZ sing 310 n n C8 C7 PKZ sing 311 n n C6 C7 PKZ sing 312 n n C6 C5 PKZ sing 313 n n C4 C5 PKZ sing 314 n n C4 C3 PKZ sing 315 n n C5P N4P PKZ sing 316 n n C5P O5P PKZ doub 317 n n N4P C3P PKZ sing 318 n n O1 C1 PKZ doub 319 n n C2P C3P PKZ sing 320 n n C2P S1P PKZ sing 321 n n C3 C2 PKZ sing 322 n n C1 S1P PKZ sing 323 n n C1 C2 PKZ sing 324 n n C3 H1 PKZ sing 325 n n C3 H2 PKZ sing 326 n n C10 H3 PKZ sing 327 n n C10 H4 PKZ sing 328 n n C8 H5 PKZ sing 329 n n C8 H6 PKZ sing 330 n n C7 H7 PKZ sing 331 n n C7 H8 PKZ sing 332 n n C5 H9 PKZ sing 333 n n C5 H10 PKZ sing 334 n n C11 H11 PKZ sing 335 n n C11 H12 PKZ sing 336 n n C13 H13 PKZ sing 337 n n C13 H14 PKZ sing 338 n n C16 H15 PKZ sing 339 n n C16 H16 PKZ sing 340 n n C16 H17 PKZ sing 341 n n C15 H18 PKZ sing 342 n n C15 H19 PKZ sing 343 n n C14 H20 PKZ sing 344 n n C14 H21 PKZ sing 345 n n C2A H22 PKZ sing 346 n n N6A H23 PKZ sing 347 n n N6A H24 PKZ sing 348 n n C8A H25 PKZ sing 349 n n C1B H26 PKZ sing 350 n n C2B H27 PKZ sing 351 n n O2B H28 PKZ sing 352 n n C3B H29 PKZ sing 353 n n O7A H30 PKZ sing 354 n n O8A H31 PKZ sing 355 n n C4B H32 PKZ sing 356 n n C5B H33 PKZ sing 357 n n C5B H34 PKZ sing 358 n n O1A H35 PKZ sing 359 n n O4A H36 PKZ sing 360 n n CCP H37 PKZ sing 361 n n CCP H38 PKZ sing 362 n n CDP H39 PKZ sing 363 n n CDP H40 PKZ sing 364 n n CDP H41 PKZ sing 365 n n CEP H42 PKZ sing 366 n n CEP H43 PKZ sing 367 n n CEP H44 PKZ sing 368 n n CAP H45 PKZ sing 369 n n OAP H46 PKZ sing 370 n n N8P H47 PKZ sing 371 n n C7P H48 PKZ sing 372 n n C7P H49 PKZ sing 373 n n C6P H50 PKZ sing 374 n n C6P H51 PKZ sing 375 n n N4P H52 PKZ sing 376 n n C3P H53 PKZ sing 377 n n C3P H54 PKZ sing 378 n n C2P H55 PKZ sing 379 n n C2P H56 PKZ sing 380 n n C2 H57 PKZ sing 381 n n C2 H58 PKZ sing 382 n n C4 H59 PKZ sing 383 n n C4 H60 PKZ sing 384 n n C6 H61 PKZ sing 385 n n C6 H62 PKZ sing 386 n n C9 H63 PKZ sing 387 n n C9 H64 PKZ sing 388 n n C12 H65 PKZ sing 389 n n C12 H66 PKZ sing 390 n n # _atom_sites.entry_id 5KQD _atom_sites.fract_transf_matrix[1][1] 0.008216 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008216 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PKZ A 1 401 1 PKZ YPC . C 3 SO4 A 1 402 1 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 PKZ . . . B 2 -0.125 82.587 108.069 1 47.69 ? C3 PKZ 401 A 1 HETATM 2 C C1 PKZ . . . B 2 1.351 82.316 110.081 1 47.11 ? C1 PKZ 401 A 1 HETATM 3 C C10 PKZ . . . B 2 -3.687 78.395 102.779 1 64.55 ? C10 PKZ 401 A 1 HETATM 4 C C8 PKZ . . . B 2 -2.363 80.196 103.834 1 57.25 ? C8 PKZ 401 A 1 HETATM 5 C C7 PKZ . . . B 2 -1.967 80.816 105.156 1 55.6 ? C7 PKZ 401 A 1 HETATM 6 C C5 PKZ . . . B 2 -1.904 82.974 106.286 1 54.04 ? C5 PKZ 401 A 1 HETATM 7 C C11 PKZ . . . B 2 -5.184 78.309 102.52 1 68.72 ? C11 PKZ 401 A 1 HETATM 8 N N1A PKZ . . . B 2 19.702 92.356 107.785 1 88.6 ? N1A PKZ 401 A 1 HETATM 9 C C2A PKZ . . . B 2 20.636 92.337 108.74 1 86.53 ? C2A PKZ 401 A 1 HETATM 10 N N3A PKZ . . . B 2 20.534 91.55 109.817 1 87.4 ? N3A PKZ 401 A 1 HETATM 11 C C4A PKZ . . . B 2 19.479 90.735 110.026 1 87.47 ? C4A PKZ 401 A 1 HETATM 12 C C5A PKZ . . . B 2 18.418 90.695 109.031 1 88.92 ? C5A PKZ 401 A 1 HETATM 13 C C6A PKZ . . . B 2 18.596 91.584 107.86 1 90.16 ? C6A PKZ 401 A 1 HETATM 14 N N6A PKZ . . . B 2 17.672 91.631 106.876 1 91.91 ? N6A PKZ 401 A 1 HETATM 15 N N7A PKZ . . . B 2 17.509 89.804 109.475 1 88.15 ? N7A PKZ 401 A 1 HETATM 16 C C8A PKZ . . . B 2 17.949 89.309 110.656 1 84.95 ? C8A PKZ 401 A 1 HETATM 17 N N9A PKZ . . . B 2 19.115 89.878 110.974 1 84.2 ? N9A PKZ 401 A 1 HETATM 18 C C1B PKZ . . . B 2 19.889 89.576 112.176 1 82.75 ? C1B PKZ 401 A 1 HETATM 19 C C2B PKZ . . . B 2 19.148 90.057 113.41 1 83.08 ? C2B PKZ 401 A 1 HETATM 20 O O2B PKZ . . . B 2 19.59 91.341 113.838 1 84.07 ? O2B PKZ 401 A 1 HETATM 21 C C3B PKZ . . . B 2 19.545 89.049 114.45 1 84.72 ? C3B PKZ 401 A 1 HETATM 22 O O3B PKZ . . . B 2 20.771 89.466 115.069 1 90.9 ? O3B PKZ 401 A 1 HETATM 23 P P3B PKZ . . . B 2 20.92 90.301 116.452 1 94.06 ? P3B PKZ 401 A 1 HETATM 24 O O7A PKZ . . . B 2 22.393 90.606 116.63 1 90.99 ? O7A PKZ 401 A 1 HETATM 25 O O8A PKZ . . . B 2 20.413 89.328 117.481 1 97.87 ? O8A PKZ 401 A 1 HETATM 26 O O9A PKZ . . . B 2 20.048 91.509 116.204 1 92.72 ? O9A PKZ 401 A 1 HETATM 27 C C4B PKZ . . . B 2 19.734 87.792 113.61 1 79.86 ? C4B PKZ 401 A 1 HETATM 28 O O4B PKZ . . . B 2 20.056 88.173 112.284 1 80.38 ? O4B PKZ 401 A 1 HETATM 29 C C5B PKZ . . . B 2 18.419 87.053 113.485 1 73.06 ? C5B PKZ 401 A 1 HETATM 30 O O5B PKZ . . . B 2 17.54 87.596 114.461 1 68.97 ? O5B PKZ 401 A 1 HETATM 31 P P1A PKZ . . . B 2 15.965 87.35 114.381 1 63.59 ? P1A PKZ 401 A 1 HETATM 32 O O1A PKZ . . . B 2 15.38 87.656 115.728 1 68.17 ? O1A PKZ 401 A 1 HETATM 33 O O2A PKZ . . . B 2 15.478 88.093 113.173 1 57.57 ? O2A PKZ 401 A 1 HETATM 34 O O3A PKZ . . . B 2 15.903 85.749 114.166 1 67.91 ? O3A PKZ 401 A 1 HETATM 35 P P2A PKZ . . . B 2 14.83 84.781 114.887 1 54.9 ? P2A PKZ 401 A 1 HETATM 36 O O4A PKZ . . . B 2 15.413 84.07 116.087 1 65.79 ? O4A PKZ 401 A 1 HETATM 37 O O5A PKZ . . . B 2 13.513 85.486 114.995 1 64.76 ? O5A PKZ 401 A 1 HETATM 38 O O6A PKZ . . . B 2 14.611 83.675 113.76 1 61.65 ? O6A PKZ 401 A 1 HETATM 39 C CBP PKZ . . . B 2 12.627 82.82 112.818 1 59.82 ? CBP PKZ 401 A 1 HETATM 40 C CCP PKZ . . . B 2 13.591 83.974 112.83 1 57.33 ? CCP PKZ 401 A 1 HETATM 41 C CDP PKZ . . . B 2 13.406 81.544 112.551 1 60.41 ? CDP PKZ 401 A 1 HETATM 42 C CEP PKZ . . . B 2 11.624 83.08 111.712 1 61.55 ? CEP PKZ 401 A 1 HETATM 43 C CAP PKZ . . . B 2 11.932 82.825 114.166 1 64.7 ? CAP PKZ 401 A 1 HETATM 44 O OAP PKZ . . . B 2 11.768 84.184 114.553 1 64.19 ? OAP PKZ 401 A 1 HETATM 45 C C9P PKZ . . . B 2 10.613 82.109 114.139 1 68.18 ? C9P PKZ 401 A 1 HETATM 46 O O9P PKZ . . . B 2 10.568 80.905 113.958 1 75.04 ? O9P PKZ 401 A 1 HETATM 47 N N8P PKZ . . . B 2 9.507 82.805 114.352 1 65.19 ? N8P PKZ 401 A 1 HETATM 48 C C7P PKZ . . . B 2 8.245 82.111 114.276 1 61.32 ? C7P PKZ 401 A 1 HETATM 49 C C6P PKZ . . . B 2 7.894 81.826 112.833 1 57.22 ? C6P PKZ 401 A 1 HETATM 50 C C5P PKZ . . . B 2 6.576 81.125 112.862 1 53.76 ? C5P PKZ 401 A 1 HETATM 51 O O5P PKZ . . . B 2 6.46 80.071 113.458 1 59.75 ? O5P PKZ 401 A 1 HETATM 52 N N4P PKZ . . . B 2 5.601 81.746 112.214 1 49.35 ? N4P PKZ 401 A 1 HETATM 53 C C3P PKZ . . . B 2 4.205 81.398 112.352 1 46.28 ? C3P PKZ 401 A 1 HETATM 54 C C2P PKZ . . . B 2 3.337 82.425 111.661 1 44.48 ? C2P PKZ 401 A 1 HETATM 55 S S1P PKZ . . . B 2 1.676 81.899 111.653 1 45.1 ? S1P PKZ 401 A 1 HETATM 56 O O1 PKZ . . . B 2 2.226 82.824 109.409 1 46.54 ? O1 PKZ 401 A 1 HETATM 57 C C2 PKZ . . . B 2 -0.012 82.058 109.498 1 46.87 ? C2 PKZ 401 A 1 HETATM 58 C C4 PKZ . . . B 2 -1.517 82.239 107.559 1 49.68 ? C4 PKZ 401 A 1 HETATM 59 C C6 PKZ . . . B 2 -2.787 82.056 105.457 1 54.85 ? C6 PKZ 401 A 1 HETATM 60 C C9 PKZ . . . B 2 -3.422 79.143 104.069 1 60.31 ? C9 PKZ 401 A 1 HETATM 61 C C12 PKZ . . . B 2 -5.435 77.482 101.282 1 72.19 ? C12 PKZ 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 61 #