data_5KQF # _model_server_result.job_id jgyXy7nF1qaok7RT4NgAfg _model_server_result.datetime_utc '2024-12-26 12:09:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5KQF # _exptl.entry_id 5KQF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 320.36 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4~{S},6~{S})-4-[2,4-bis(fluoranyl)phenyl]-4-methyl-6-pyrimidin-5-yl-5,6-dihydro-1,3-thiazin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KQF _cell.length_a 102.158 _cell.length_b 102.158 _cell.length_c 169.78 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 217 A CYS 203 1_555 A SG CYS 421 A CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 A SG CYS 279 A CYS 265 1_555 A SG CYS 444 A CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C15 H14 F2 N4 S' _chem_comp.formula_weight 320.36 _chem_comp.id 6WD _chem_comp.mon_nstd_flag . _chem_comp.name (4~{S},6~{S})-4-[2,4-bis(fluoranyl)phenyl]-4-methyl-6-pyrimidin-5-yl-5,6-dihydro-1,3-thiazin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N13 6WD doub 1 n y C12 N11 6WD sing 2 n y N13 C14 6WD sing 3 n y N11 C10 6WD doub 4 n y C14 C9 6WD doub 5 n y C10 C9 6WD sing 6 n y C9 C4 6WD sing 7 n n F21 C20 6WD sing 8 n n C3 C4 6WD sing 9 n n C3 C2 6WD sing 10 n n C4 S5 6WD sing 11 n n C20 C19 6WD doub 12 n y C20 C15 6WD sing 13 n y C1 C2 6WD sing 14 n n C19 C18 6WD sing 15 n y C2 C15 6WD sing 16 n n C2 N7 6WD sing 17 n n C15 C16 6WD doub 18 n y S5 C6 6WD sing 19 n n N7 C6 6WD doub 20 n n C18 F22 6WD sing 21 n n C18 C17 6WD doub 22 n y C6 N8 6WD sing 23 n n C16 C17 6WD sing 24 n y C17 H1 6WD sing 25 n n C16 H2 6WD sing 26 n n C19 H3 6WD sing 27 n n C12 H4 6WD sing 28 n n C1 H5 6WD sing 29 n n C1 H6 6WD sing 30 n n C1 H7 6WD sing 31 n n C3 H8 6WD sing 32 n n C3 H9 6WD sing 33 n n C4 H10 6WD sing 34 n n N8 H11 6WD sing 35 n n N8 H12 6WD sing 36 n n C10 H13 6WD sing 37 n n C14 H14 6WD sing 38 n n # _atom_sites.entry_id 5KQF _atom_sites.fract_transf_matrix[1][1] 0.009789 _atom_sites.fract_transf_matrix[1][2] 0.005652 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6WD A 1 501 1 6WD LG1 . C 3 HOH A 1 601 112 HOH HOH . C 3 HOH A 2 602 121 HOH HOH . C 3 HOH A 3 603 106 HOH HOH . C 3 HOH A 4 604 29 HOH HOH . C 3 HOH A 5 605 97 HOH HOH . C 3 HOH A 6 606 190 HOH HOH . C 3 HOH A 7 607 129 HOH HOH . C 3 HOH A 8 608 110 HOH HOH . C 3 HOH A 9 609 66 HOH HOH . C 3 HOH A 10 610 36 HOH HOH . C 3 HOH A 11 611 95 HOH HOH . C 3 HOH A 12 612 34 HOH HOH . C 3 HOH A 13 613 207 HOH HOH . C 3 HOH A 14 614 51 HOH HOH . C 3 HOH A 15 615 78 HOH HOH . C 3 HOH A 16 616 20 HOH HOH . C 3 HOH A 17 617 139 HOH HOH . C 3 HOH A 18 618 39 HOH HOH . C 3 HOH A 19 619 123 HOH HOH . C 3 HOH A 20 620 151 HOH HOH . C 3 HOH A 21 621 142 HOH HOH . C 3 HOH A 22 622 200 HOH HOH . C 3 HOH A 23 623 117 HOH HOH . C 3 HOH A 24 624 111 HOH HOH . C 3 HOH A 25 625 265 HOH HOH . C 3 HOH A 26 626 81 HOH HOH . C 3 HOH A 27 627 181 HOH HOH . C 3 HOH A 28 628 293 HOH HOH . C 3 HOH A 29 629 221 HOH HOH . C 3 HOH A 30 630 150 HOH HOH . C 3 HOH A 31 631 93 HOH HOH . C 3 HOH A 32 632 85 HOH HOH . C 3 HOH A 33 633 197 HOH HOH . C 3 HOH A 34 634 79 HOH HOH . C 3 HOH A 35 635 124 HOH HOH . C 3 HOH A 36 636 102 HOH HOH . C 3 HOH A 37 637 6 HOH HOH . C 3 HOH A 38 638 61 HOH HOH . C 3 HOH A 39 639 115 HOH HOH . C 3 HOH A 40 640 9 HOH HOH . C 3 HOH A 41 641 44 HOH HOH . C 3 HOH A 42 642 21 HOH HOH . C 3 HOH A 43 643 3 HOH HOH . C 3 HOH A 44 644 183 HOH HOH . C 3 HOH A 45 645 27 HOH HOH . C 3 HOH A 46 646 24 HOH HOH . C 3 HOH A 47 647 7 HOH HOH . C 3 HOH A 48 648 68 HOH HOH . C 3 HOH A 49 649 67 HOH HOH . C 3 HOH A 50 650 48 HOH HOH . C 3 HOH A 51 651 153 HOH HOH . C 3 HOH A 52 652 59 HOH HOH . C 3 HOH A 53 653 214 HOH HOH . C 3 HOH A 54 654 74 HOH HOH . C 3 HOH A 55 655 276 HOH HOH . C 3 HOH A 56 656 116 HOH HOH . C 3 HOH A 57 657 159 HOH HOH . C 3 HOH A 58 658 148 HOH HOH . C 3 HOH A 59 659 191 HOH HOH . C 3 HOH A 60 660 137 HOH HOH . C 3 HOH A 61 661 217 HOH HOH . C 3 HOH A 62 662 126 HOH HOH . C 3 HOH A 63 663 178 HOH HOH . C 3 HOH A 64 664 176 HOH HOH . C 3 HOH A 65 665 22 HOH HOH . C 3 HOH A 66 666 52 HOH HOH . C 3 HOH A 67 667 49 HOH HOH . C 3 HOH A 68 668 47 HOH HOH . C 3 HOH A 69 669 16 HOH HOH . C 3 HOH A 70 670 211 HOH HOH . C 3 HOH A 71 671 94 HOH HOH . C 3 HOH A 72 672 38 HOH HOH . C 3 HOH A 73 673 5 HOH HOH . C 3 HOH A 74 674 245 HOH HOH . C 3 HOH A 75 675 101 HOH HOH . C 3 HOH A 76 676 60 HOH HOH . C 3 HOH A 77 677 42 HOH HOH . C 3 HOH A 78 678 136 HOH HOH . C 3 HOH A 79 679 275 HOH HOH . C 3 HOH A 80 680 166 HOH HOH . C 3 HOH A 81 681 162 HOH HOH . C 3 HOH A 82 682 69 HOH HOH . C 3 HOH A 83 683 187 HOH HOH . C 3 HOH A 84 684 109 HOH HOH . C 3 HOH A 85 685 41 HOH HOH . C 3 HOH A 86 686 53 HOH HOH . C 3 HOH A 87 687 8 HOH HOH . C 3 HOH A 88 688 62 HOH HOH . C 3 HOH A 89 689 45 HOH HOH . C 3 HOH A 90 690 157 HOH HOH . C 3 HOH A 91 691 86 HOH HOH . C 3 HOH A 92 692 4 HOH HOH . C 3 HOH A 93 693 103 HOH HOH . C 3 HOH A 94 694 43 HOH HOH . C 3 HOH A 95 695 72 HOH HOH . C 3 HOH A 96 696 225 HOH HOH . C 3 HOH A 97 697 37 HOH HOH . C 3 HOH A 98 698 120 HOH HOH . C 3 HOH A 99 699 122 HOH HOH . C 3 HOH A 100 700 30 HOH HOH . C 3 HOH A 101 701 149 HOH HOH . C 3 HOH A 102 702 219 HOH HOH . C 3 HOH A 103 703 33 HOH HOH . C 3 HOH A 104 704 141 HOH HOH . C 3 HOH A 105 705 13 HOH HOH . C 3 HOH A 106 706 130 HOH HOH . C 3 HOH A 107 707 267 HOH HOH . C 3 HOH A 108 708 46 HOH HOH . C 3 HOH A 109 709 17 HOH HOH . C 3 HOH A 110 710 119 HOH HOH . C 3 HOH A 111 711 296 HOH HOH . C 3 HOH A 112 712 182 HOH HOH . C 3 HOH A 113 713 152 HOH HOH . C 3 HOH A 114 714 12 HOH HOH . C 3 HOH A 115 715 26 HOH HOH . C 3 HOH A 116 716 189 HOH HOH . C 3 HOH A 117 717 57 HOH HOH . C 3 HOH A 118 718 31 HOH HOH . C 3 HOH A 119 719 138 HOH HOH . C 3 HOH A 120 720 144 HOH HOH . C 3 HOH A 121 721 11 HOH HOH . C 3 HOH A 122 722 83 HOH HOH . C 3 HOH A 123 723 218 HOH HOH . C 3 HOH A 124 724 171 HOH HOH . C 3 HOH A 125 725 77 HOH HOH . C 3 HOH A 126 726 271 HOH HOH . C 3 HOH A 127 727 55 HOH HOH . C 3 HOH A 128 728 203 HOH HOH . C 3 HOH A 129 729 251 HOH HOH . C 3 HOH A 130 730 10 HOH HOH . C 3 HOH A 131 731 108 HOH HOH . C 3 HOH A 132 732 210 HOH HOH . C 3 HOH A 133 733 184 HOH HOH . C 3 HOH A 134 734 73 HOH HOH . C 3 HOH A 135 735 236 HOH HOH . C 3 HOH A 136 736 125 HOH HOH . C 3 HOH A 137 737 76 HOH HOH . C 3 HOH A 138 738 165 HOH HOH . C 3 HOH A 139 739 71 HOH HOH . C 3 HOH A 140 740 238 HOH HOH . C 3 HOH A 141 741 233 HOH HOH . C 3 HOH A 142 742 70 HOH HOH . C 3 HOH A 143 743 193 HOH HOH . C 3 HOH A 144 744 88 HOH HOH . C 3 HOH A 145 745 54 HOH HOH . C 3 HOH A 146 746 19 HOH HOH . C 3 HOH A 147 747 252 HOH HOH . C 3 HOH A 148 748 290 HOH HOH . C 3 HOH A 149 749 114 HOH HOH . C 3 HOH A 150 750 23 HOH HOH . C 3 HOH A 151 751 213 HOH HOH . C 3 HOH A 152 752 170 HOH HOH . C 3 HOH A 153 753 220 HOH HOH . C 3 HOH A 154 754 158 HOH HOH . C 3 HOH A 155 755 84 HOH HOH . C 3 HOH A 156 756 35 HOH HOH . C 3 HOH A 157 757 161 HOH HOH . C 3 HOH A 158 758 243 HOH HOH . C 3 HOH A 159 759 209 HOH HOH . C 3 HOH A 160 760 32 HOH HOH . C 3 HOH A 161 761 127 HOH HOH . C 3 HOH A 162 762 227 HOH HOH . C 3 HOH A 163 763 260 HOH HOH . C 3 HOH A 164 764 91 HOH HOH . C 3 HOH A 165 765 164 HOH HOH . C 3 HOH A 166 766 180 HOH HOH . C 3 HOH A 167 767 113 HOH HOH . C 3 HOH A 168 768 163 HOH HOH . C 3 HOH A 169 769 18 HOH HOH . C 3 HOH A 170 770 140 HOH HOH . C 3 HOH A 171 771 223 HOH HOH . C 3 HOH A 172 772 96 HOH HOH . C 3 HOH A 173 773 56 HOH HOH . C 3 HOH A 174 774 231 HOH HOH . C 3 HOH A 175 775 118 HOH HOH . C 3 HOH A 176 776 80 HOH HOH . C 3 HOH A 177 777 28 HOH HOH . C 3 HOH A 178 778 208 HOH HOH . C 3 HOH A 179 779 239 HOH HOH . C 3 HOH A 180 780 75 HOH HOH . C 3 HOH A 181 781 90 HOH HOH . C 3 HOH A 182 782 63 HOH HOH . C 3 HOH A 183 783 232 HOH HOH . C 3 HOH A 184 784 154 HOH HOH . C 3 HOH A 185 785 155 HOH HOH . C 3 HOH A 186 786 262 HOH HOH . C 3 HOH A 187 787 89 HOH HOH . C 3 HOH A 188 788 177 HOH HOH . C 3 HOH A 189 789 146 HOH HOH . C 3 HOH A 190 790 58 HOH HOH . C 3 HOH A 191 791 194 HOH HOH . C 3 HOH A 192 792 246 HOH HOH . C 3 HOH A 193 793 25 HOH HOH . C 3 HOH A 194 794 64 HOH HOH . C 3 HOH A 195 795 274 HOH HOH . C 3 HOH A 196 796 135 HOH HOH . C 3 HOH A 197 797 216 HOH HOH . C 3 HOH A 198 798 185 HOH HOH . C 3 HOH A 199 799 100 HOH HOH . C 3 HOH A 200 800 40 HOH HOH . C 3 HOH A 201 801 247 HOH HOH . C 3 HOH A 202 802 266 HOH HOH . C 3 HOH A 203 803 248 HOH HOH . C 3 HOH A 204 804 128 HOH HOH . C 3 HOH A 205 805 204 HOH HOH . C 3 HOH A 206 806 104 HOH HOH . C 3 HOH A 207 807 222 HOH HOH . C 3 HOH A 208 808 283 HOH HOH . C 3 HOH A 209 809 160 HOH HOH . C 3 HOH A 210 810 234 HOH HOH . C 3 HOH A 211 811 230 HOH HOH . C 3 HOH A 212 812 273 HOH HOH . C 3 HOH A 213 813 192 HOH HOH . C 3 HOH A 214 814 98 HOH HOH . C 3 HOH A 215 815 131 HOH HOH . C 3 HOH A 216 816 132 HOH HOH . C 3 HOH A 217 817 99 HOH HOH . C 3 HOH A 218 818 250 HOH HOH . C 3 HOH A 219 819 292 HOH HOH . C 3 HOH A 220 820 205 HOH HOH . C 3 HOH A 221 821 280 HOH HOH . C 3 HOH A 222 822 167 HOH HOH . C 3 HOH A 223 823 261 HOH HOH . C 3 HOH A 224 824 215 HOH HOH . C 3 HOH A 225 825 249 HOH HOH . C 3 HOH A 226 826 147 HOH HOH . C 3 HOH A 227 827 212 HOH HOH . C 3 HOH A 228 828 237 HOH HOH . C 3 HOH A 229 829 240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 6WD . . . B 2 21.575 39.108 -7.28 1 26.98 ? C18 6WD 501 A 1 HETATM 2 C C17 6WD . . . B 2 20.518 39.339 -6.402 1 26.16 ? C17 6WD 501 A 1 HETATM 3 C C16 6WD . . . B 2 19.211 39.159 -6.814 1 25.52 ? C16 6WD 501 A 1 HETATM 4 C C15 6WD . . . B 2 18.919 38.745 -8.105 1 26.21 ? C15 6WD 501 A 1 HETATM 5 C C19 6WD . . . B 2 21.318 38.69 -8.586 1 25.92 ? C19 6WD 501 A 1 HETATM 6 C C20 6WD . . . B 2 19.996 38.506 -8.997 1 26.11 ? C20 6WD 501 A 1 HETATM 7 C C12 6WD . . . B 2 15.623 42.924 -12.829 1 36.17 ? C12 6WD 501 A 1 HETATM 8 C C1 6WD . . . B 2 17.3 37.086 -8.971 1 25.36 ? C1 6WD 501 A 1 HETATM 9 C C2 6WD . . . B 2 17.462 38.532 -8.513 1 26.91 ? C2 6WD 501 A 1 HETATM 10 C C3 6WD . . . B 2 17.096 39.401 -9.722 1 28.12 ? C3 6WD 501 A 1 HETATM 11 C C4 6WD . . . B 2 17.171 40.899 -9.434 1 31.06 ? C4 6WD 501 A 1 HETATM 12 S S5 6WD . . . B 2 16.198 41.296 -7.964 1 28.67 ? S5 6WD 501 A 1 HETATM 13 C C6 6WD . . . B 2 15.936 39.817 -7.061 1 25.29 ? C6 6WD 501 A 1 HETATM 14 N N7 6WD . . . B 2 16.508 38.72 -7.396 1 25.62 ? N7 6WD 501 A 1 HETATM 15 N N8 6WD . . . B 2 15.245 39.928 -5.918 1 23.57 ? N8 6WD 501 A 1 HETATM 16 C C9 6WD . . . B 2 16.615 41.621 -10.643 1 33.82 ? C9 6WD 501 A 1 HETATM 17 C C10 6WD . . . B 2 15.244 41.609 -10.927 1 37.13 ? C10 6WD 501 A 1 HETATM 18 N N11 6WD . . . B 2 14.77 42.262 -12.019 1 38.61 ? N11 6WD 501 A 1 HETATM 19 N N13 6WD . . . B 2 16.949 42.946 -12.577 1 36.79 ? N13 6WD 501 A 1 HETATM 20 C C14 6WD . . . B 2 17.464 42.309 -11.5 1 36.46 ? C14 6WD 501 A 1 HETATM 21 F F21 6WD . . . B 2 19.758 38.107 -10.255 1 25.97 ? F21 6WD 501 A 1 HETATM 22 F F22 6WD . . . B 2 22.829 39.292 -6.845 1 27.76 ? F22 6WD 501 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #