data_5KR9 # _model_server_result.job_id kYwDRzFu95sC56z8zyRqCg _model_server_result.datetime_utc '2024-11-22 03:27:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kr9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 5KR9 # _exptl.entry_id 5KR9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 268.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Coumestrol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.25 _cell.angle_gamma 90 _cell.entry_id 5KR9 _cell.length_a 56.473 _cell.length_b 82.592 _cell.length_c 58.603 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KR9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C15 H8 O5' _chem_comp.formula_weight 268.221 _chem_comp.id CUE _chem_comp.mon_nstd_flag . _chem_comp.name Coumestrol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3,9-dihydroxy-6H-[1]benzofuro[3,2-c]chromen-6-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAC CAM CUE sing 70 n n CAM CAI CUE doub 71 n y CAM CAE CUE sing 72 n y CAI CAP CUE sing 73 n y CAE CAG CUE doub 74 n y CAP OAK CUE sing 75 n y CAP CAR CUE doub 76 n y OAK CAS CUE sing 77 n y CAG CAR CUE sing 78 n y CAR CAT CUE sing 79 n y CAS CAT CUE doub 80 n y CAS CAQ CUE sing 81 n n CAT CAN CUE sing 82 n n CAF CAQ CUE doub 83 n y CAF CAD CUE sing 84 n y CAQ CAO CUE sing 85 n y CAD CAL CUE doub 86 n y CAN OAA CUE doub 87 n n CAN OAJ CUE sing 88 n n CAO OAJ CUE sing 89 n n CAO CAH CUE doub 90 n y CAL CAH CUE sing 91 n y CAL OAB CUE sing 92 n n OAB H1 CUE sing 93 n n OAC H2 CUE sing 94 n n CAD H3 CUE sing 95 n n CAE H4 CUE sing 96 n n CAF H5 CUE sing 97 n n CAG H6 CUE sing 98 n n CAH H7 CUE sing 99 n n CAI H8 CUE sing 100 n n # _atom_sites.entry_id 5KR9 _atom_sites.fract_transf_matrix[1][1] 0.017708 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006886 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012108 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CUE A 1 601 1 CUE CUE . F 3 CUE B 1 601 1 CUE CUE . G 4 HOH A 1 701 161 HOH HOH . G 4 HOH A 2 702 150 HOH HOH . G 4 HOH A 3 703 100 HOH HOH . G 4 HOH A 4 704 98 HOH HOH . G 4 HOH A 5 705 5 HOH HOH . G 4 HOH A 6 706 173 HOH HOH . G 4 HOH A 7 707 23 HOH HOH . G 4 HOH A 8 708 63 HOH HOH . G 4 HOH A 9 709 170 HOH HOH . G 4 HOH A 10 710 103 HOH HOH . G 4 HOH A 11 711 86 HOH HOH . G 4 HOH A 12 712 73 HOH HOH . G 4 HOH A 13 713 119 HOH HOH . G 4 HOH A 14 714 31 HOH HOH . G 4 HOH A 15 715 21 HOH HOH . G 4 HOH A 16 716 171 HOH HOH . G 4 HOH A 17 717 49 HOH HOH . G 4 HOH A 18 718 167 HOH HOH . G 4 HOH A 19 719 131 HOH HOH . G 4 HOH A 20 720 6 HOH HOH . G 4 HOH A 21 721 10 HOH HOH . G 4 HOH A 22 722 176 HOH HOH . G 4 HOH A 23 723 74 HOH HOH . G 4 HOH A 24 724 117 HOH HOH . G 4 HOH A 25 725 35 HOH HOH . G 4 HOH A 26 726 101 HOH HOH . G 4 HOH A 27 727 196 HOH HOH . G 4 HOH A 28 728 11 HOH HOH . G 4 HOH A 29 729 79 HOH HOH . G 4 HOH A 30 730 113 HOH HOH . G 4 HOH A 31 731 88 HOH HOH . G 4 HOH A 32 732 197 HOH HOH . G 4 HOH A 33 733 8 HOH HOH . G 4 HOH A 34 734 91 HOH HOH . G 4 HOH A 35 735 75 HOH HOH . G 4 HOH A 36 736 40 HOH HOH . G 4 HOH A 37 737 32 HOH HOH . G 4 HOH A 38 738 22 HOH HOH . G 4 HOH A 39 739 34 HOH HOH . G 4 HOH A 40 740 9 HOH HOH . G 4 HOH A 41 741 172 HOH HOH . G 4 HOH A 42 742 93 HOH HOH . G 4 HOH A 43 743 76 HOH HOH . G 4 HOH A 44 744 181 HOH HOH . G 4 HOH A 45 745 25 HOH HOH . G 4 HOH A 46 746 56 HOH HOH . G 4 HOH A 47 747 115 HOH HOH . G 4 HOH A 48 748 14 HOH HOH . G 4 HOH A 49 749 3 HOH HOH . G 4 HOH A 50 750 48 HOH HOH . G 4 HOH A 51 751 28 HOH HOH . G 4 HOH A 52 752 159 HOH HOH . G 4 HOH A 53 753 78 HOH HOH . G 4 HOH A 54 754 157 HOH HOH . G 4 HOH A 55 755 50 HOH HOH . G 4 HOH A 56 756 67 HOH HOH . G 4 HOH A 57 757 102 HOH HOH . G 4 HOH A 58 758 72 HOH HOH . G 4 HOH A 59 759 57 HOH HOH . G 4 HOH A 60 760 97 HOH HOH . G 4 HOH A 61 761 92 HOH HOH . G 4 HOH A 62 762 124 HOH HOH . G 4 HOH A 63 763 142 HOH HOH . G 4 HOH A 64 764 41 HOH HOH . G 4 HOH A 65 765 179 HOH HOH . G 4 HOH A 66 766 140 HOH HOH . G 4 HOH A 67 767 44 HOH HOH . G 4 HOH A 68 768 146 HOH HOH . G 4 HOH A 69 769 105 HOH HOH . G 4 HOH A 70 770 192 HOH HOH . G 4 HOH A 71 771 122 HOH HOH . G 4 HOH A 72 772 54 HOH HOH . G 4 HOH A 73 773 130 HOH HOH . G 4 HOH A 74 774 163 HOH HOH . G 4 HOH A 75 775 112 HOH HOH . G 4 HOH A 76 776 46 HOH HOH . G 4 HOH A 77 777 155 HOH HOH . G 4 HOH A 78 778 137 HOH HOH . G 4 HOH A 79 779 185 HOH HOH . G 4 HOH A 80 780 59 HOH HOH . G 4 HOH A 81 781 65 HOH HOH . G 4 HOH A 82 782 95 HOH HOH . G 4 HOH A 83 783 187 HOH HOH . G 4 HOH A 84 784 133 HOH HOH . G 4 HOH A 85 785 66 HOH HOH . G 4 HOH A 86 786 147 HOH HOH . G 4 HOH A 87 787 125 HOH HOH . G 4 HOH A 88 788 126 HOH HOH . G 4 HOH A 89 789 153 HOH HOH . G 4 HOH A 90 790 191 HOH HOH . G 4 HOH A 91 791 38 HOH HOH . G 4 HOH A 92 792 194 HOH HOH . G 4 HOH A 93 793 154 HOH HOH . G 4 HOH A 94 794 84 HOH HOH . G 4 HOH A 95 795 108 HOH HOH . G 4 HOH A 96 796 141 HOH HOH . G 4 HOH A 97 797 129 HOH HOH . H 4 HOH B 1 701 162 HOH HOH . H 4 HOH B 2 702 37 HOH HOH . H 4 HOH B 3 703 18 HOH HOH . H 4 HOH B 4 704 166 HOH HOH . H 4 HOH B 5 705 16 HOH HOH . H 4 HOH B 6 706 106 HOH HOH . H 4 HOH B 7 707 26 HOH HOH . H 4 HOH B 8 708 148 HOH HOH . H 4 HOH B 9 709 189 HOH HOH . H 4 HOH B 10 710 27 HOH HOH . H 4 HOH B 11 711 71 HOH HOH . H 4 HOH B 12 712 4 HOH HOH . H 4 HOH B 13 713 186 HOH HOH . H 4 HOH B 14 714 51 HOH HOH . H 4 HOH B 15 715 110 HOH HOH . H 4 HOH B 16 716 33 HOH HOH . H 4 HOH B 17 717 12 HOH HOH . H 4 HOH B 18 718 2 HOH HOH . H 4 HOH B 19 719 135 HOH HOH . H 4 HOH B 20 720 69 HOH HOH . H 4 HOH B 21 721 42 HOH HOH . H 4 HOH B 22 722 145 HOH HOH . H 4 HOH B 23 723 30 HOH HOH . H 4 HOH B 24 724 190 HOH HOH . H 4 HOH B 25 725 177 HOH HOH . H 4 HOH B 26 726 15 HOH HOH . H 4 HOH B 27 727 24 HOH HOH . H 4 HOH B 28 728 47 HOH HOH . H 4 HOH B 29 729 55 HOH HOH . H 4 HOH B 30 730 109 HOH HOH . H 4 HOH B 31 731 64 HOH HOH . H 4 HOH B 32 732 45 HOH HOH . H 4 HOH B 33 733 19 HOH HOH . H 4 HOH B 34 734 52 HOH HOH . H 4 HOH B 35 735 127 HOH HOH . H 4 HOH B 36 736 82 HOH HOH . H 4 HOH B 37 737 60 HOH HOH . H 4 HOH B 38 738 118 HOH HOH . H 4 HOH B 39 739 39 HOH HOH . H 4 HOH B 40 740 152 HOH HOH . H 4 HOH B 41 741 62 HOH HOH . H 4 HOH B 42 742 160 HOH HOH . H 4 HOH B 43 743 7 HOH HOH . H 4 HOH B 44 744 70 HOH HOH . H 4 HOH B 45 745 94 HOH HOH . H 4 HOH B 46 746 90 HOH HOH . H 4 HOH B 47 747 13 HOH HOH . H 4 HOH B 48 748 83 HOH HOH . H 4 HOH B 49 749 36 HOH HOH . H 4 HOH B 50 750 77 HOH HOH . H 4 HOH B 51 751 17 HOH HOH . H 4 HOH B 52 752 80 HOH HOH . H 4 HOH B 53 753 99 HOH HOH . H 4 HOH B 54 754 151 HOH HOH . H 4 HOH B 55 755 139 HOH HOH . H 4 HOH B 56 756 165 HOH HOH . H 4 HOH B 57 757 20 HOH HOH . H 4 HOH B 58 758 87 HOH HOH . H 4 HOH B 59 759 81 HOH HOH . H 4 HOH B 60 760 195 HOH HOH . H 4 HOH B 61 761 89 HOH HOH . H 4 HOH B 62 762 164 HOH HOH . H 4 HOH B 63 763 144 HOH HOH . H 4 HOH B 64 764 149 HOH HOH . H 4 HOH B 65 765 138 HOH HOH . H 4 HOH B 66 766 178 HOH HOH . H 4 HOH B 67 767 104 HOH HOH . H 4 HOH B 68 768 175 HOH HOH . H 4 HOH B 69 769 114 HOH HOH . H 4 HOH B 70 770 182 HOH HOH . H 4 HOH B 71 771 121 HOH HOH . H 4 HOH B 72 772 111 HOH HOH . H 4 HOH B 73 773 180 HOH HOH . I 4 HOH C 1 701 43 HOH HOH . I 4 HOH C 2 702 58 HOH HOH . I 4 HOH C 3 703 134 HOH HOH . I 4 HOH C 4 704 116 HOH HOH . J 4 HOH D 1 701 136 HOH HOH . J 4 HOH D 2 702 85 HOH HOH . J 4 HOH D 3 703 183 HOH HOH . J 4 HOH D 4 704 188 HOH HOH . J 4 HOH D 5 705 168 HOH HOH . J 4 HOH D 6 706 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA CUE . . . F 3 -11.199 -16.289 -29.817 0.9 38.21 ? OAA CUE 601 B 1 HETATM 2 O OAB CUE . . . F 3 -5.571 -16.941 -34.672 0.9 35.88 ? OAB CUE 601 B 1 HETATM 3 O OAC CUE . . . F 3 -16.956 -20.234 -31.95 0.9 40.5 ? OAC CUE 601 B 1 HETATM 4 C CAD CUE . . . F 3 -7.739 -18.151 -35.054 0.9 34.67 ? CAD CUE 601 B 1 HETATM 5 C CAE CUE . . . F 3 -15.407 -18.715 -30.661 0.9 39.35 ? CAE CUE 601 B 1 HETATM 6 C CAF CUE . . . F 3 -9.103 -18.487 -34.641 0.9 34.65 ? CAF CUE 601 B 1 HETATM 7 C CAG CUE . . . F 3 -14.113 -18.043 -30.517 0.9 38.97 ? CAG CUE 601 B 1 HETATM 8 C CAH CUE . . . F 3 -7.452 -16.696 -33.009 0.9 36.26 ? CAH CUE 601 B 1 HETATM 9 C CAI CUE . . . F 3 -14.63 -19.773 -32.834 0.9 39.23 ? CAI CUE 601 B 1 HETATM 10 O OAJ CUE . . . F 3 -9.4 -16.471 -31.332 0.9 36.68 ? OAJ CUE 601 B 1 HETATM 11 O OAK CUE . . . F 3 -12.112 -19.112 -33.545 0.9 38.32 ? OAK CUE 601 B 1 HETATM 12 C CAL CUE . . . F 3 -6.916 -17.26 -34.243 0.9 34.74 ? CAL CUE 601 B 1 HETATM 13 C CAM CUE . . . F 3 -15.669 -19.579 -31.818 0.9 39.74 ? CAM CUE 601 B 1 HETATM 14 C CAN CUE . . . F 3 -10.74 -16.795 -30.906 0.9 36.73 ? CAN CUE 601 B 1 HETATM 15 C CAO CUE . . . F 3 -8.856 -17.037 -32.577 0.9 35.86 ? CAO CUE 601 B 1 HETATM 16 C CAP CUE . . . F 3 -13.309 -19.098 -32.697 0.9 38.6 ? CAP CUE 601 B 1 HETATM 17 C CAQ CUE . . . F 3 -9.66 -17.912 -33.374 0.9 35.65 ? CAQ CUE 601 B 1 HETATM 18 C CAR CUE . . . F 3 -13.054 -18.242 -31.555 0.9 38.56 ? CAR CUE 601 B 1 HETATM 19 C CAS CUE . . . F 3 -11.081 -18.269 -32.954 0.9 36.39 ? CAS CUE 601 B 1 HETATM 20 C CAT CUE . . . F 3 -11.621 -17.712 -31.723 0.9 36.95 ? CAT CUE 601 B 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #