data_5KRD # _model_server_result.job_id iQhvx_jQyT3-WPcvjHY4Mw _model_server_result.datetime_utc '2024-11-25 09:33:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5krd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5KRD # _exptl.entry_id 5KRD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 220.008 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-iodanylphenol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KRD _cell.length_a 155.049 _cell.length_b 155.049 _cell.length_c 89.005 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1,3 B,E,F,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 29.668333 3 'crystal symmetry operation' 11_455 -x+y-1,y,-z -1 0 0 0 1 0 0 0 -1 -155.049 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C6 H5 I O' _chem_comp.formula_weight 220.008 _chem_comp.id 6X8 _chem_comp.mon_nstd_flag . _chem_comp.name 2-iodanylphenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CH CG 6X8 doub 1 n y CH CC 6X8 sing 2 n y CG CF 6X8 sing 3 n y OF CF 6X8 sing 4 n n CC CD 6X8 doub 5 n y CF CE 6X8 doub 6 n y CE CD 6X8 sing 7 n y CE IE 6X8 sing 8 n n CG H1 6X8 sing 9 n n CD H2 6X8 sing 10 n n CH H3 6X8 sing 11 n n CC H4 6X8 sing 12 n n OF H5 6X8 sing 13 n n # _atom_sites.entry_id 5KRD _atom_sites.fract_transf_matrix[1][1] 0.00645 _atom_sites.fract_transf_matrix[1][2] 0.003724 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007447 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 301 301 FMN FMN . D 3 6X8 A 1 302 302 6X8 2IP . E 2 FMN B 1 301 302 FMN FMN . F 3 6X8 B 1 302 303 6X8 2IP . G 4 HOH A 1 401 92 HOH HOH . G 4 HOH A 2 402 106 HOH HOH . G 4 HOH A 3 403 64 HOH HOH . G 4 HOH A 4 404 77 HOH HOH . G 4 HOH A 5 405 104 HOH HOH . G 4 HOH A 6 406 48 HOH HOH . G 4 HOH A 7 407 30 HOH HOH . G 4 HOH A 8 408 10 HOH HOH . G 4 HOH A 9 409 122 HOH HOH . G 4 HOH A 10 410 112 HOH HOH . G 4 HOH A 11 411 115 HOH HOH . G 4 HOH A 12 412 36 HOH HOH . G 4 HOH A 13 413 27 HOH HOH . G 4 HOH A 14 414 73 HOH HOH . G 4 HOH A 15 415 6 HOH HOH . G 4 HOH A 16 416 4 HOH HOH . G 4 HOH A 17 417 2 HOH HOH . G 4 HOH A 18 418 127 HOH HOH . G 4 HOH A 19 419 1 HOH HOH . G 4 HOH A 20 420 19 HOH HOH . G 4 HOH A 21 421 31 HOH HOH . G 4 HOH A 22 422 25 HOH HOH . G 4 HOH A 23 423 15 HOH HOH . G 4 HOH A 24 424 3 HOH HOH . G 4 HOH A 25 425 126 HOH HOH . G 4 HOH A 26 426 32 HOH HOH . G 4 HOH A 27 427 93 HOH HOH . G 4 HOH A 28 428 9 HOH HOH . G 4 HOH A 29 429 67 HOH HOH . G 4 HOH A 30 430 29 HOH HOH . G 4 HOH A 31 431 16 HOH HOH . G 4 HOH A 32 432 128 HOH HOH . G 4 HOH A 33 433 33 HOH HOH . G 4 HOH A 34 434 23 HOH HOH . G 4 HOH A 35 435 41 HOH HOH . G 4 HOH A 36 436 98 HOH HOH . G 4 HOH A 37 437 17 HOH HOH . G 4 HOH A 38 438 129 HOH HOH . G 4 HOH A 39 439 69 HOH HOH . G 4 HOH A 40 440 56 HOH HOH . G 4 HOH A 41 441 80 HOH HOH . G 4 HOH A 42 442 21 HOH HOH . G 4 HOH A 43 443 65 HOH HOH . G 4 HOH A 44 444 20 HOH HOH . G 4 HOH A 45 445 82 HOH HOH . G 4 HOH A 46 446 99 HOH HOH . G 4 HOH A 47 447 94 HOH HOH . G 4 HOH A 48 448 81 HOH HOH . G 4 HOH A 49 449 68 HOH HOH . G 4 HOH A 50 450 72 HOH HOH . G 4 HOH A 51 451 14 HOH HOH . G 4 HOH A 52 452 42 HOH HOH . G 4 HOH A 53 453 114 HOH HOH . G 4 HOH A 54 454 116 HOH HOH . G 4 HOH A 55 455 46 HOH HOH . G 4 HOH A 56 456 125 HOH HOH . G 4 HOH A 57 457 90 HOH HOH . G 4 HOH A 58 458 43 HOH HOH . G 4 HOH A 59 459 124 HOH HOH . G 4 HOH A 60 460 44 HOH HOH . G 4 HOH A 61 461 113 HOH HOH . G 4 HOH A 62 462 105 HOH HOH . G 4 HOH A 63 463 55 HOH HOH . G 4 HOH A 64 464 7 HOH HOH . G 4 HOH A 65 465 87 HOH HOH . G 4 HOH A 66 466 11 HOH HOH . G 4 HOH A 67 467 118 HOH HOH . G 4 HOH A 68 468 100 HOH HOH . G 4 HOH A 69 469 76 HOH HOH . G 4 HOH A 70 470 74 HOH HOH . G 4 HOH A 71 471 78 HOH HOH . G 4 HOH A 72 472 120 HOH HOH . G 4 HOH A 73 473 70 HOH HOH . G 4 HOH A 74 474 59 HOH HOH . G 4 HOH A 75 475 50 HOH HOH . G 4 HOH A 76 476 75 HOH HOH . G 4 HOH A 77 477 123 HOH HOH . G 4 HOH A 78 478 54 HOH HOH . H 4 HOH B 1 401 13 HOH HOH . H 4 HOH B 2 402 57 HOH HOH . H 4 HOH B 3 403 52 HOH HOH . H 4 HOH B 4 404 45 HOH HOH . H 4 HOH B 5 405 28 HOH HOH . H 4 HOH B 6 406 66 HOH HOH . H 4 HOH B 7 407 86 HOH HOH . H 4 HOH B 8 408 5 HOH HOH . H 4 HOH B 9 409 63 HOH HOH . H 4 HOH B 10 410 95 HOH HOH . H 4 HOH B 11 411 12 HOH HOH . H 4 HOH B 12 412 37 HOH HOH . H 4 HOH B 13 413 22 HOH HOH . H 4 HOH B 14 414 18 HOH HOH . H 4 HOH B 15 415 96 HOH HOH . H 4 HOH B 16 416 35 HOH HOH . H 4 HOH B 17 417 62 HOH HOH . H 4 HOH B 18 418 34 HOH HOH . H 4 HOH B 19 419 110 HOH HOH . H 4 HOH B 20 420 101 HOH HOH . H 4 HOH B 21 421 91 HOH HOH . H 4 HOH B 22 422 47 HOH HOH . H 4 HOH B 23 423 8 HOH HOH . H 4 HOH B 24 424 79 HOH HOH . H 4 HOH B 25 425 53 HOH HOH . H 4 HOH B 26 426 26 HOH HOH . H 4 HOH B 27 427 40 HOH HOH . H 4 HOH B 28 428 85 HOH HOH . H 4 HOH B 29 429 84 HOH HOH . H 4 HOH B 30 430 24 HOH HOH . H 4 HOH B 31 431 102 HOH HOH . H 4 HOH B 32 432 39 HOH HOH . H 4 HOH B 33 433 71 HOH HOH . H 4 HOH B 34 434 49 HOH HOH . H 4 HOH B 35 435 97 HOH HOH . H 4 HOH B 36 436 89 HOH HOH . H 4 HOH B 37 437 61 HOH HOH . H 4 HOH B 38 438 38 HOH HOH . H 4 HOH B 39 439 119 HOH HOH . H 4 HOH B 40 440 51 HOH HOH . H 4 HOH B 41 441 108 HOH HOH . H 4 HOH B 42 442 121 HOH HOH . H 4 HOH B 43 443 58 HOH HOH . H 4 HOH B 44 444 103 HOH HOH . H 4 HOH B 45 445 60 HOH HOH . H 4 HOH B 46 446 111 HOH HOH . H 4 HOH B 47 447 109 HOH HOH . H 4 HOH B 48 448 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CG 6X8 . . . D 3 -67.402 -19.739 13.903 1 65.36 ? CG 6X8 302 A 1 HETATM 2 C CD 6X8 . . . D 3 -67.002 -17.205 12.865 1 69.06 ? CD 6X8 302 A 1 HETATM 3 C CE 6X8 . . . D 3 -68.161 -17.893 12.536 1 66.69 ? CE 6X8 302 A 1 HETATM 4 C CH 6X8 . . . D 3 -66.23 -19.047 14.235 1 64.7 ? CH 6X8 302 A 1 HETATM 5 C CC 6X8 . . . D 3 -66.034 -17.771 13.705 1 67.94 ? CC 6X8 302 A 1 HETATM 6 C CF 6X8 . . . D 3 -68.363 -19.166 13.064 1 63.01 ? CF 6X8 302 A 1 HETATM 7 O OF 6X8 . . . D 3 -69.378 -19.779 12.806 1 52.38 ? OF 6X8 302 A 1 HETATM 8 I IE 6X8 . . . D 3 -69.544 -17.048 11.37 0.33 59.7 ? IE 6X8 302 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #