data_5KRH # _model_server_result.job_id wBaXI_dGvH7MGddzjXy0TA _model_server_result.datetime_utc '2024-10-12 11:14:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5krh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 5KRH # _exptl.entry_id 5KRH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.473 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(8~{R},9~{S},13~{S},14~{S},16~{E})-13-methyl-3-oxidanyl-16-(phenylmethylidene)-6,7,8,9,11,12,14,15-octahydrocyclopenta[ a]phenanthren-17-one' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.67 _cell.angle_gamma 90 _cell.entry_id 5KRH _cell.length_a 55.53 _cell.length_b 81.903 _cell.length_c 58.665 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KRH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C25 H26 O2' _chem_comp.formula_weight 358.473 _chem_comp.id 6WN _chem_comp.mon_nstd_flag . _chem_comp.name '(8~{R},9~{S},13~{S},14~{S},16~{E})-13-methyl-3-oxidanyl-16-(phenylmethylidene)-6,7,8,9,11,12,14,15-octahydrocyclopenta[ a]phenanthren-17-one' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '16-benzylidene estrone' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C24 6WN doub 1 n y C23 C22 6WN sing 2 n y C24 C25 6WN sing 3 n y C22 C21 6WN doub 4 n y C25 C20 6WN doub 5 n y C21 C20 6WN sing 6 n y C20 C19 6WN sing 7 n n C19 C18 6WN doub 8 e n C18 C17 6WN sing 9 n n C18 C01 6WN sing 10 n n C17 C16 6WN sing 11 n n O01 C01 6WN doub 12 n n C01 C02 6WN sing 13 n n C03 C02 6WN sing 14 n n C02 C16 6WN sing 15 n n C02 C04 6WN sing 16 n n C16 C15 6WN sing 17 n n C15 C14 6WN sing 18 n n C15 C06 6WN sing 19 n n C14 C13 6WN sing 20 n n C04 C05 6WN sing 21 n n C13 C12 6WN sing 22 n n C05 C06 6WN sing 23 n n C06 C07 6WN sing 24 n n C12 C07 6WN doub 25 n y C12 C11 6WN sing 26 n y C07 C08 6WN sing 27 n y C11 C10 6WN doub 28 n y C08 C09 6WN doub 29 n y C10 C09 6WN sing 30 n y C10 O02 6WN sing 31 n n C03 H1 6WN sing 32 n n C03 H2 6WN sing 33 n n C03 H3 6WN sing 34 n n C04 H4 6WN sing 35 n n C04 H5 6WN sing 36 n n C05 H6 6WN sing 37 n n C05 H7 6WN sing 38 n n C06 H8 6WN sing 39 n n C08 H9 6WN sing 40 n n C09 H10 6WN sing 41 n n O02 H11 6WN sing 42 n n C11 H12 6WN sing 43 n n C13 H13 6WN sing 44 n n C13 H14 6WN sing 45 n n C14 H15 6WN sing 46 n n C14 H16 6WN sing 47 n n C15 H17 6WN sing 48 n n C16 H18 6WN sing 49 n n C17 H19 6WN sing 50 n n C17 H20 6WN sing 51 n n C19 H21 6WN sing 52 n n C21 H22 6WN sing 53 n n C22 H23 6WN sing 54 n n C23 H24 6WN sing 55 n n C24 H25 6WN sing 56 n n C25 H26 6WN sing 57 n n # _atom_sites.entry_id 5KRH _atom_sites.fract_transf_matrix[1][1] 0.018008 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006794 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 6WN A 1 601 1 6WN 6WN . F 3 6WN B 1 601 1 6WN 6WN . G 4 HOH A 1 701 71 HOH HOH . G 4 HOH A 2 702 85 HOH HOH . G 4 HOH A 3 703 91 HOH HOH . G 4 HOH A 4 704 79 HOH HOH . G 4 HOH A 5 705 50 HOH HOH . G 4 HOH A 6 706 23 HOH HOH . G 4 HOH A 7 707 75 HOH HOH . G 4 HOH A 8 708 76 HOH HOH . G 4 HOH A 9 709 59 HOH HOH . G 4 HOH A 10 710 65 HOH HOH . G 4 HOH A 11 711 7 HOH HOH . G 4 HOH A 12 712 92 HOH HOH . G 4 HOH A 13 713 3 HOH HOH . G 4 HOH A 14 714 41 HOH HOH . G 4 HOH A 15 715 38 HOH HOH . G 4 HOH A 16 716 57 HOH HOH . G 4 HOH A 17 717 54 HOH HOH . G 4 HOH A 18 718 15 HOH HOH . G 4 HOH A 19 719 10 HOH HOH . G 4 HOH A 20 720 52 HOH HOH . G 4 HOH A 21 721 16 HOH HOH . G 4 HOH A 22 722 9 HOH HOH . G 4 HOH A 23 723 26 HOH HOH . G 4 HOH A 24 724 28 HOH HOH . G 4 HOH A 25 725 108 HOH HOH . G 4 HOH A 26 726 24 HOH HOH . G 4 HOH A 27 727 74 HOH HOH . G 4 HOH A 28 728 94 HOH HOH . G 4 HOH A 29 729 63 HOH HOH . G 4 HOH A 30 730 86 HOH HOH . G 4 HOH A 31 731 14 HOH HOH . G 4 HOH A 32 732 66 HOH HOH . G 4 HOH A 33 733 80 HOH HOH . G 4 HOH A 34 734 18 HOH HOH . G 4 HOH A 35 735 11 HOH HOH . G 4 HOH A 36 736 8 HOH HOH . G 4 HOH A 37 737 103 HOH HOH . G 4 HOH A 38 738 36 HOH HOH . G 4 HOH A 39 739 47 HOH HOH . G 4 HOH A 40 740 44 HOH HOH . G 4 HOH A 41 741 107 HOH HOH . G 4 HOH A 42 742 96 HOH HOH . G 4 HOH A 43 743 98 HOH HOH . G 4 HOH A 44 744 46 HOH HOH . H 4 HOH B 1 701 40 HOH HOH . H 4 HOH B 2 702 48 HOH HOH . H 4 HOH B 3 703 6 HOH HOH . H 4 HOH B 4 704 77 HOH HOH . H 4 HOH B 5 705 32 HOH HOH . H 4 HOH B 6 706 29 HOH HOH . H 4 HOH B 7 707 13 HOH HOH . H 4 HOH B 8 708 27 HOH HOH . H 4 HOH B 9 709 17 HOH HOH . H 4 HOH B 10 710 2 HOH HOH . H 4 HOH B 11 711 31 HOH HOH . H 4 HOH B 12 712 81 HOH HOH . H 4 HOH B 13 713 12 HOH HOH . H 4 HOH B 14 714 37 HOH HOH . H 4 HOH B 15 715 5 HOH HOH . H 4 HOH B 16 716 21 HOH HOH . H 4 HOH B 17 717 19 HOH HOH . H 4 HOH B 18 718 60 HOH HOH . H 4 HOH B 19 719 106 HOH HOH . H 4 HOH B 20 720 56 HOH HOH . H 4 HOH B 21 721 90 HOH HOH . H 4 HOH B 22 722 58 HOH HOH . H 4 HOH B 23 723 68 HOH HOH . H 4 HOH B 24 724 95 HOH HOH . H 4 HOH B 25 725 72 HOH HOH . H 4 HOH B 26 726 93 HOH HOH . H 4 HOH B 27 727 55 HOH HOH . H 4 HOH B 28 728 70 HOH HOH . H 4 HOH B 29 729 35 HOH HOH . H 4 HOH B 30 730 62 HOH HOH . H 4 HOH B 31 731 43 HOH HOH . H 4 HOH B 32 732 34 HOH HOH . H 4 HOH B 33 733 39 HOH HOH . H 4 HOH B 34 734 67 HOH HOH . H 4 HOH B 35 735 33 HOH HOH . H 4 HOH B 36 736 53 HOH HOH . H 4 HOH B 37 737 61 HOH HOH . H 4 HOH B 38 738 78 HOH HOH . H 4 HOH B 39 739 51 HOH HOH . H 4 HOH B 40 740 30 HOH HOH . H 4 HOH B 41 741 1 HOH HOH . H 4 HOH B 42 742 87 HOH HOH . H 4 HOH B 43 743 110 HOH HOH . H 4 HOH B 44 744 49 HOH HOH . H 4 HOH B 45 745 89 HOH HOH . H 4 HOH B 46 746 83 HOH HOH . H 4 HOH B 47 747 105 HOH HOH . H 4 HOH B 48 748 102 HOH HOH . H 4 HOH B 49 749 101 HOH HOH . H 4 HOH B 50 750 25 HOH HOH . I 4 HOH C 1 701 64 HOH HOH . I 4 HOH C 2 702 73 HOH HOH . I 4 HOH C 3 703 42 HOH HOH . J 4 HOH D 1 701 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 6WN . . . F 3 -15.855 -19.014 -32.348 1 66.37 ? O01 6WN 601 B 1 HETATM 2 C C01 6WN . . . F 3 -14.862 -18.578 -31.807 1 66.06 ? C01 6WN 601 B 1 HETATM 3 C C02 6WN . . . F 3 -13.597 -18.673 -32.302 1 64.75 ? C02 6WN 601 B 1 HETATM 4 C C03 6WN . . . F 3 -13.073 -20.018 -31.813 1 53.37 ? C03 6WN 601 B 1 HETATM 5 C C04 6WN . . . F 3 -13.403 -18.635 -33.785 1 64.92 ? C04 6WN 601 B 1 HETATM 6 C C05 6WN . . . F 3 -11.893 -18.704 -34.085 1 63.94 ? C05 6WN 601 B 1 HETATM 7 C C06 6WN . . . F 3 -11.185 -17.58 -33.355 1 55.56 ? C06 6WN 601 B 1 HETATM 8 C C07 6WN . . . F 3 -9.807 -17.466 -33.661 1 52.23 ? C07 6WN 601 B 1 HETATM 9 C C08 6WN . . . F 3 -9.341 -17.74 -34.926 1 50.96 ? C08 6WN 601 B 1 HETATM 10 C C09 6WN . . . F 3 -8.02 -17.596 -35.264 1 48.71 ? C09 6WN 601 B 1 HETATM 11 C C10 6WN . . . F 3 -7.149 -17.152 -34.321 1 48.31 ? C10 6WN 601 B 1 HETATM 12 O O02 6WN . . . F 3 -5.879 -17.012 -34.617 1 46.14 ? O02 6WN 601 B 1 HETATM 13 C C11 6WN . . . F 3 -7.582 -16.859 -33.062 1 49.65 ? C11 6WN 601 B 1 HETATM 14 C C12 6WN . . . F 3 -8.904 -16.994 -32.726 1 50.57 ? C12 6WN 601 B 1 HETATM 15 C C13 6WN . . . F 3 -9.284 -16.691 -31.422 1 50.63 ? C13 6WN 601 B 1 HETATM 16 C C14 6WN . . . F 3 -10.776 -16.532 -31.163 1 56.35 ? C14 6WN 601 B 1 HETATM 17 C C15 6WN . . . F 3 -11.516 -17.639 -31.852 1 58.13 ? C15 6WN 601 B 1 HETATM 18 C C16 6WN . . . F 3 -13.003 -17.498 -31.703 1 62.61 ? C16 6WN 601 B 1 HETATM 19 C C17 6WN . . . F 3 -13.557 -17.652 -30.302 1 64.98 ? C17 6WN 601 B 1 HETATM 20 C C18 6WN . . . F 3 -14.857 -18.019 -30.616 1 66.41 ? C18 6WN 601 B 1 HETATM 21 C C19 6WN . . . F 3 -15.988 -17.833 -29.92 1 68.28 ? C19 6WN 601 B 1 HETATM 22 C C20 6WN . . . F 3 -16.04 -17.267 -28.634 1 69.8 ? C20 6WN 601 B 1 HETATM 23 C C21 6WN . . . F 3 -14.991 -17.359 -27.731 1 70.55 ? C21 6WN 601 B 1 HETATM 24 C C22 6WN . . . F 3 -15.05 -16.834 -26.452 1 71.13 ? C22 6WN 601 B 1 HETATM 25 C C23 6WN . . . F 3 -16.208 -16.214 -26.033 1 71.6 ? C23 6WN 601 B 1 HETATM 26 C C24 6WN . . . F 3 -17.272 -16.147 -26.903 1 71.15 ? C24 6WN 601 B 1 HETATM 27 C C25 6WN . . . F 3 -17.201 -16.681 -28.18 1 70.51 ? C25 6WN 601 B 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #