data_5KRI # _model_server_result.job_id aKB3WeWQOcRD8fpEpyUL3w _model_server_result.datetime_utc '2024-11-25 11:21:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kri # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 5KRI # _exptl.entry_id 5KRI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 362.505 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (8~{R},9~{S},13~{S},14~{S},16~{R},17~{S})-13-methyl-16-(phenylmethyl)-6,7,8,9,11,12,14,15,16,17-decahydrocyclopenta[a]phenanthrene-3,17-diol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.74 _cell.angle_gamma 90 _cell.entry_id 5KRI _cell.length_a 54.857 _cell.length_b 82.907 _cell.length_c 58.585 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KRI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C25 H30 O2' _chem_comp.formula_weight 362.505 _chem_comp.id 6WM _chem_comp.mon_nstd_flag . _chem_comp.name (8~{R},9~{S},13~{S},14~{S},16~{R},17~{S})-13-methyl-16-(phenylmethyl)-6,7,8,9,11,12,14,15,16,17-decahydrocyclopenta[a]phenanthrene-3,17-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C04 C05 6WM doub 1 n y C04 C03 6WM sing 2 n y C05 C06 6WM sing 3 n y O02 C25 6WM sing 4 n n C25 C08 6WM sing 5 n n C25 C23 6WM sing 6 n n C03 C02 6WM doub 7 n y C07 C06 6WM sing 8 n n C07 C08 6WM sing 9 n n C06 C01 6WM doub 10 n y C08 C09 6WM sing 11 n n C22 C23 6WM sing 12 n n C22 C21 6WM sing 13 n n C23 C10 6WM sing 14 n n C23 C24 6WM sing 15 n n C02 C01 6WM sing 16 n y C09 C10 6WM sing 17 n n C10 C11 6WM sing 18 n n C21 C20 6WM sing 19 n n C20 C11 6WM sing 20 n n C20 C19 6WM sing 21 n n C11 C12 6WM sing 22 n n C12 C13 6WM sing 23 n n C19 C18 6WM doub 24 n y C19 C14 6WM sing 25 n y C18 C17 6WM sing 26 n y C13 C14 6WM sing 27 n n C14 C15 6WM doub 28 n y C17 C16 6WM doub 29 n y C15 C16 6WM sing 30 n y C16 O01 6WM sing 31 n n C01 H1 6WM sing 32 n n C02 H2 6WM sing 33 n n C03 H3 6WM sing 34 n n C04 H4 6WM sing 35 n n C05 H5 6WM sing 36 n n C07 H6 6WM sing 37 n n C07 H7 6WM sing 38 n n C08 H8 6WM sing 39 n n C09 H9 6WM sing 40 n n C09 H10 6WM sing 41 n n C10 H11 6WM sing 42 n n C11 H12 6WM sing 43 n n C12 H13 6WM sing 44 n n C12 H14 6WM sing 45 n n C13 H15 6WM sing 46 n n C13 H16 6WM sing 47 n n C15 H17 6WM sing 48 n n O01 H18 6WM sing 49 n n C17 H19 6WM sing 50 n n C18 H20 6WM sing 51 n n C20 H21 6WM sing 52 n n C21 H22 6WM sing 53 n n C21 H23 6WM sing 54 n n C22 H24 6WM sing 55 n n C22 H25 6WM sing 56 n n C24 H26 6WM sing 57 n n C24 H27 6WM sing 58 n n C24 H28 6WM sing 59 n n C25 H29 6WM sing 60 n n O02 H30 6WM sing 61 n n # _atom_sites.entry_id 5KRI _atom_sites.fract_transf_matrix[1][1] 0.018229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006903 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 6WM A 1 601 601 6WM 6WM . F 3 6WM B 1 601 601 6WM 6WM . G 4 HOH A 1 701 704 HOH HOH . G 4 HOH A 2 702 703 HOH HOH . G 4 HOH A 3 703 702 HOH HOH . G 4 HOH A 4 704 701 HOH HOH . G 4 HOH A 5 705 705 HOH HOH . G 4 HOH A 6 706 706 HOH HOH . G 4 HOH A 7 707 707 HOH HOH . G 4 HOH A 8 708 708 HOH HOH . G 4 HOH A 9 709 709 HOH HOH . G 4 HOH A 10 710 710 HOH HOH . G 4 HOH A 11 711 712 HOH HOH . G 4 HOH A 12 712 711 HOH HOH . G 4 HOH A 13 713 713 HOH HOH . G 4 HOH A 14 714 714 HOH HOH . G 4 HOH A 15 715 715 HOH HOH . G 4 HOH A 16 716 716 HOH HOH . G 4 HOH A 17 717 718 HOH HOH . G 4 HOH A 18 718 719 HOH HOH . G 4 HOH A 19 719 720 HOH HOH . G 4 HOH A 20 720 721 HOH HOH . G 4 HOH A 21 721 725 HOH HOH . G 4 HOH A 22 722 722 HOH HOH . G 4 HOH A 23 723 723 HOH HOH . G 4 HOH A 24 724 730 HOH HOH . G 4 HOH A 25 725 724 HOH HOH . G 4 HOH A 26 726 727 HOH HOH . G 4 HOH A 27 727 729 HOH HOH . G 4 HOH A 28 728 726 HOH HOH . G 4 HOH A 29 729 731 HOH HOH . G 4 HOH A 30 730 732 HOH HOH . G 4 HOH A 31 731 734 HOH HOH . G 4 HOH A 32 732 733 HOH HOH . G 4 HOH A 33 733 728 HOH HOH . G 4 HOH A 34 734 735 HOH HOH . G 4 HOH A 35 735 736 HOH HOH . G 4 HOH A 36 736 717 HOH HOH . G 4 HOH A 37 737 737 HOH HOH . G 4 HOH A 38 738 738 HOH HOH . H 4 HOH B 1 701 701 HOH HOH . H 4 HOH B 2 702 702 HOH HOH . H 4 HOH B 3 703 703 HOH HOH . H 4 HOH B 4 704 704 HOH HOH . H 4 HOH B 5 705 705 HOH HOH . H 4 HOH B 6 706 706 HOH HOH . H 4 HOH B 7 707 707 HOH HOH . H 4 HOH B 8 708 709 HOH HOH . H 4 HOH B 9 709 708 HOH HOH . H 4 HOH B 10 710 710 HOH HOH . H 4 HOH B 11 711 712 HOH HOH . H 4 HOH B 12 712 714 HOH HOH . H 4 HOH B 13 713 711 HOH HOH . H 4 HOH B 14 714 715 HOH HOH . H 4 HOH B 15 715 717 HOH HOH . H 4 HOH B 16 716 716 HOH HOH . H 4 HOH B 17 717 713 HOH HOH . H 4 HOH B 18 718 719 HOH HOH . H 4 HOH B 19 719 718 HOH HOH . H 4 HOH B 20 720 720 HOH HOH . H 4 HOH B 21 721 722 HOH HOH . H 4 HOH B 22 722 724 HOH HOH . H 4 HOH B 23 723 721 HOH HOH . H 4 HOH B 24 724 723 HOH HOH . H 4 HOH B 25 725 726 HOH HOH . H 4 HOH B 26 726 725 HOH HOH . H 4 HOH B 27 727 727 HOH HOH . H 4 HOH B 28 728 730 HOH HOH . H 4 HOH B 29 729 729 HOH HOH . H 4 HOH B 30 730 731 HOH HOH . H 4 HOH B 31 731 728 HOH HOH . H 4 HOH B 32 732 732 HOH HOH . H 4 HOH B 33 733 733 HOH HOH . H 4 HOH B 34 734 734 HOH HOH . H 4 HOH B 35 735 735 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6WM . . . E 3 -23.816 -29.665 -7.014 0.92 66.14 ? C01 6WM 601 A 1 HETATM 2 C C02 6WM . . . E 3 -25.206 -29.425 -7.089 0.92 66.78 ? C02 6WM 601 A 1 HETATM 3 C C03 6WM . . . E 3 -25.783 -29.051 -8.315 0.92 67.14 ? C03 6WM 601 A 1 HETATM 4 C C04 6WM . . . E 3 -24.994 -28.902 -9.478 0.92 67.28 ? C04 6WM 601 A 1 HETATM 5 C C05 6WM . . . E 3 -23.609 -29.142 -9.404 0.92 66.85 ? C05 6WM 601 A 1 HETATM 6 C C06 6WM . . . E 3 -23.014 -29.521 -8.178 0.92 65.92 ? C06 6WM 601 A 1 HETATM 7 C C07 6WM . . . E 3 -21.635 -29.743 -8.138 0.92 63.77 ? C07 6WM 601 A 1 HETATM 8 C C08 6WM . . . E 3 -20.831 -28.434 -8.027 0.92 60.33 ? C08 6WM 601 A 1 HETATM 9 C C09 6WM . . . E 3 -20.899 -27.807 -6.629 0.92 58.47 ? C09 6WM 601 A 1 HETATM 10 C C10 6WM . . . E 3 -19.479 -27.313 -6.438 0.92 58.35 ? C10 6WM 601 A 1 HETATM 11 C C11 6WM . . . E 3 -19.019 -27.105 -4.989 0.92 54.6 ? C11 6WM 601 A 1 HETATM 12 C C12 6WM . . . E 3 -19.953 -26.243 -4.152 0.92 51.88 ? C12 6WM 601 A 1 HETATM 13 C C13 6WM . . . E 3 -19.443 -26.362 -2.717 0.92 49.53 ? C13 6WM 601 A 1 HETATM 14 C C14 6WM . . . E 3 -18.082 -26.034 -2.615 0.92 46.8 ? C14 6WM 601 A 1 HETATM 15 C C15 6WM . . . E 3 -17.618 -25.639 -1.34 0.92 44.41 ? C15 6WM 601 A 1 HETATM 16 C C16 6WM . . . E 3 -16.264 -25.3 -1.177 0.92 44.27 ? C16 6WM 601 A 1 HETATM 17 O O01 6WM . . . E 3 -15.817 -24.922 0.044 0.92 42.61 ? O01 6WM 601 A 1 HETATM 18 C C17 6WM . . . E 3 -15.368 -25.348 -2.26 0.92 46.12 ? C17 6WM 601 A 1 HETATM 19 C C18 6WM . . . E 3 -15.813 -25.738 -3.537 0.92 47.59 ? C18 6WM 601 A 1 HETATM 20 C C19 6WM . . . E 3 -17.173 -26.082 -3.725 0.92 49.26 ? C19 6WM 601 A 1 HETATM 21 C C20 6WM . . . E 3 -17.603 -26.479 -5.02 0.92 52.68 ? C20 6WM 601 A 1 HETATM 22 C C21 6WM . . . E 3 -16.648 -27.428 -5.787 0.92 55.38 ? C21 6WM 601 A 1 HETATM 23 C C22 6WM . . . E 3 -17.201 -27.794 -7.181 0.92 58.85 ? C22 6WM 601 A 1 HETATM 24 C C23 6WM . . . E 3 -18.608 -28.396 -7.065 0.92 59.83 ? C23 6WM 601 A 1 HETATM 25 C C24 6WM . . . E 3 -18.536 -29.771 -6.326 0.92 64.99 ? C24 6WM 601 A 1 HETATM 26 C C25 6WM . . . E 3 -19.331 -28.487 -8.404 0.92 61.9 ? C25 6WM 601 A 1 HETATM 27 O O02 6WM . . . E 3 -18.92 -29.565 -9.278 0.92 60.93 ? O02 6WM 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 27 #