data_5KRI
#
_model_server_result.job_id            YFndRkDpxqXwvAnx4_uhJw 
_model_server_result.datetime_utc      '2024-10-12 11:12:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kri 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    5KRI 
#
_exptl.entry_id    5KRI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              362.505 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (8~{R},9~{S},13~{S},14~{S},16~{R},17~{S})-13-methyl-16-(phenylmethyl)-6,7,8,9,11,12,14,15,16,17-decahydrocyclopenta[a]phenanthrene-3,17-diol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.74 
_cell.angle_gamma         90 
_cell.entry_id            5KRI 
_cell.length_a            54.857 
_cell.length_b            82.907 
_cell.length_c            58.585 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KRI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C25 H30 O2' 
_chem_comp.formula_weight    362.505 
_chem_comp.id                6WM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (8~{R},9~{S},13~{S},14~{S},16~{R},17~{S})-13-methyl-16-(phenylmethyl)-6,7,8,9,11,12,14,15,16,17-decahydrocyclopenta[a]phenanthrene-3,17-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C04 C05 6WM doub 1 n y 
C04 C03 6WM sing 2 n y 
C05 C06 6WM sing 3 n y 
O02 C25 6WM sing 4 n n 
C25 C08 6WM sing 5 n n 
C25 C23 6WM sing 6 n n 
C03 C02 6WM doub 7 n y 
C07 C06 6WM sing 8 n n 
C07 C08 6WM sing 9 n n 
C06 C01 6WM doub 10 n y 
C08 C09 6WM sing 11 n n 
C22 C23 6WM sing 12 n n 
C22 C21 6WM sing 13 n n 
C23 C10 6WM sing 14 n n 
C23 C24 6WM sing 15 n n 
C02 C01 6WM sing 16 n y 
C09 C10 6WM sing 17 n n 
C10 C11 6WM sing 18 n n 
C21 C20 6WM sing 19 n n 
C20 C11 6WM sing 20 n n 
C20 C19 6WM sing 21 n n 
C11 C12 6WM sing 22 n n 
C12 C13 6WM sing 23 n n 
C19 C18 6WM doub 24 n y 
C19 C14 6WM sing 25 n y 
C18 C17 6WM sing 26 n y 
C13 C14 6WM sing 27 n n 
C14 C15 6WM doub 28 n y 
C17 C16 6WM doub 29 n y 
C15 C16 6WM sing 30 n y 
C16 O01 6WM sing 31 n n 
C01 H1 6WM sing 32 n n 
C02 H2 6WM sing 33 n n 
C03 H3 6WM sing 34 n n 
C04 H4 6WM sing 35 n n 
C05 H5 6WM sing 36 n n 
C07 H6 6WM sing 37 n n 
C07 H7 6WM sing 38 n n 
C08 H8 6WM sing 39 n n 
C09 H9 6WM sing 40 n n 
C09 H10 6WM sing 41 n n 
C10 H11 6WM sing 42 n n 
C11 H12 6WM sing 43 n n 
C12 H13 6WM sing 44 n n 
C12 H14 6WM sing 45 n n 
C13 H15 6WM sing 46 n n 
C13 H16 6WM sing 47 n n 
C15 H17 6WM sing 48 n n 
O01 H18 6WM sing 49 n n 
C17 H19 6WM sing 50 n n 
C18 H20 6WM sing 51 n n 
C20 H21 6WM sing 52 n n 
C21 H22 6WM sing 53 n n 
C21 H23 6WM sing 54 n n 
C22 H24 6WM sing 55 n n 
C22 H25 6WM sing 56 n n 
C24 H26 6WM sing 57 n n 
C24 H27 6WM sing 58 n n 
C24 H28 6WM sing 59 n n 
C25 H29 6WM sing 60 n n 
O02 H30 6WM sing 61 n n 
#
_atom_sites.entry_id                     5KRI 
_atom_sites.fract_transf_matrix[1][1]    0.018229 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006903 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012062 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018252 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 6WM A 1 601 601 6WM 6WM . 
F 3 6WM B 1 601 601 6WM 6WM . 
G 4 HOH A 1 701 704 HOH HOH . 
G 4 HOH A 2 702 703 HOH HOH . 
G 4 HOH A 3 703 702 HOH HOH . 
G 4 HOH A 4 704 701 HOH HOH . 
G 4 HOH A 5 705 705 HOH HOH . 
G 4 HOH A 6 706 706 HOH HOH . 
G 4 HOH A 7 707 707 HOH HOH . 
G 4 HOH A 8 708 708 HOH HOH . 
G 4 HOH A 9 709 709 HOH HOH . 
G 4 HOH A 10 710 710 HOH HOH . 
G 4 HOH A 11 711 712 HOH HOH . 
G 4 HOH A 12 712 711 HOH HOH . 
G 4 HOH A 13 713 713 HOH HOH . 
G 4 HOH A 14 714 714 HOH HOH . 
G 4 HOH A 15 715 715 HOH HOH . 
G 4 HOH A 16 716 716 HOH HOH . 
G 4 HOH A 17 717 718 HOH HOH . 
G 4 HOH A 18 718 719 HOH HOH . 
G 4 HOH A 19 719 720 HOH HOH . 
G 4 HOH A 20 720 721 HOH HOH . 
G 4 HOH A 21 721 725 HOH HOH . 
G 4 HOH A 22 722 722 HOH HOH . 
G 4 HOH A 23 723 723 HOH HOH . 
G 4 HOH A 24 724 730 HOH HOH . 
G 4 HOH A 25 725 724 HOH HOH . 
G 4 HOH A 26 726 727 HOH HOH . 
G 4 HOH A 27 727 729 HOH HOH . 
G 4 HOH A 28 728 726 HOH HOH . 
G 4 HOH A 29 729 731 HOH HOH . 
G 4 HOH A 30 730 732 HOH HOH . 
G 4 HOH A 31 731 734 HOH HOH . 
G 4 HOH A 32 732 733 HOH HOH . 
G 4 HOH A 33 733 728 HOH HOH . 
G 4 HOH A 34 734 735 HOH HOH . 
G 4 HOH A 35 735 736 HOH HOH . 
G 4 HOH A 36 736 717 HOH HOH . 
G 4 HOH A 37 737 737 HOH HOH . 
G 4 HOH A 38 738 738 HOH HOH . 
H 4 HOH B 1 701 701 HOH HOH . 
H 4 HOH B 2 702 702 HOH HOH . 
H 4 HOH B 3 703 703 HOH HOH . 
H 4 HOH B 4 704 704 HOH HOH . 
H 4 HOH B 5 705 705 HOH HOH . 
H 4 HOH B 6 706 706 HOH HOH . 
H 4 HOH B 7 707 707 HOH HOH . 
H 4 HOH B 8 708 709 HOH HOH . 
H 4 HOH B 9 709 708 HOH HOH . 
H 4 HOH B 10 710 710 HOH HOH . 
H 4 HOH B 11 711 712 HOH HOH . 
H 4 HOH B 12 712 714 HOH HOH . 
H 4 HOH B 13 713 711 HOH HOH . 
H 4 HOH B 14 714 715 HOH HOH . 
H 4 HOH B 15 715 717 HOH HOH . 
H 4 HOH B 16 716 716 HOH HOH . 
H 4 HOH B 17 717 713 HOH HOH . 
H 4 HOH B 18 718 719 HOH HOH . 
H 4 HOH B 19 719 718 HOH HOH . 
H 4 HOH B 20 720 720 HOH HOH . 
H 4 HOH B 21 721 722 HOH HOH . 
H 4 HOH B 22 722 724 HOH HOH . 
H 4 HOH B 23 723 721 HOH HOH . 
H 4 HOH B 24 724 723 HOH HOH . 
H 4 HOH B 25 725 726 HOH HOH . 
H 4 HOH B 26 726 725 HOH HOH . 
H 4 HOH B 27 727 727 HOH HOH . 
H 4 HOH B 28 728 730 HOH HOH . 
H 4 HOH B 29 729 729 HOH HOH . 
H 4 HOH B 30 730 731 HOH HOH . 
H 4 HOH B 31 731 728 HOH HOH . 
H 4 HOH B 32 732 732 HOH HOH . 
H 4 HOH B 33 733 733 HOH HOH . 
H 4 HOH B 34 734 734 HOH HOH . 
H 4 HOH B 35 735 735 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C08 6WM . . . F 3 -14.406 -17.493 -30.965 1 68.9 ? C08 6WM 601 B 1 
HETATM 2 C C09 6WM . . . F 3 -12.927 -17.4 -30.644 1 66.47 ? C09 6WM 601 B 1 
HETATM 3 C C10 6WM . . . F 3 -12.393 -17.631 -32.024 1 64.25 ? C10 6WM 601 B 1 
HETATM 4 C C11 6WM . . . F 3 -10.904 -17.887 -32.042 1 60.39 ? C11 6WM 601 B 1 
HETATM 5 C C12 6WM . . . F 3 -10.086 -16.81 -31.378 1 59 ? C12 6WM 601 B 1 
HETATM 6 C C13 6WM . . . F 3 -8.631 -17.276 -31.445 1 58.11 ? C13 6WM 601 B 1 
HETATM 7 C C14 6WM . . . F 3 -8.17 -17.589 -32.72 1 56.37 ? C14 6WM 601 B 1 
HETATM 8 C C15 6WM . . . F 3 -6.807 -17.458 -32.959 1 55.31 ? C15 6WM 601 B 1 
HETATM 9 C C16 6WM . . . F 3 -6.322 -17.767 -34.214 1 53.16 ? C16 6WM 601 B 1 
HETATM 10 O O01 6WM . . . F 3 -5.015 -17.665 -34.451 1 51.67 ? O01 6WM 601 B 1 
HETATM 11 C C17 6WM . . . F 3 -7.174 -18.194 -35.211 1 53.38 ? C17 6WM 601 B 1 
HETATM 12 C C18 6WM . . . F 3 -8.538 -18.325 -34.987 1 54.41 ? C18 6WM 601 B 1 
HETATM 13 C C19 6WM . . . F 3 -9.054 -18.025 -33.731 1 57.65 ? C19 6WM 601 B 1 
HETATM 14 C C20 6WM . . . F 3 -10.44 -18.143 -33.487 1 59.99 ? C20 6WM 601 B 1 
HETATM 15 C C21 6WM . . . F 3 -11.153 -19.39 -34.016 1 62.73 ? C21 6WM 601 B 1 
HETATM 16 C C22 6WM . . . F 3 -12.67 -19.236 -33.829 1 64.81 ? C22 6WM 601 B 1 
HETATM 17 C C23 6WM . . . F 3 -13.052 -18.931 -32.376 1 65.34 ? C23 6WM 601 B 1 
HETATM 18 C C24 6WM . . . F 3 -12.758 -20.149 -31.483 1 70.1 ? C24 6WM 601 B 1 
HETATM 19 C C25 6WM . . . F 3 -14.457 -18.438 -32.177 1 68.54 ? C25 6WM 601 B 1 
HETATM 20 O O02 6WM . . . F 3 -15.483 -19.43 -32.146 1 67.78 ? O02 6WM 601 B 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           20 
#