data_5KRJ # _model_server_result.job_id bC-5dfUM6ABhPMzgcCd8YA _model_server_result.datetime_utc '2024-11-29 02:30:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5krj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 5KRJ # _exptl.entry_id 5KRJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.536 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'naphthalen-1-yl (1~{S},2~{R},4~{S})-5,6-bis(4-hydroxyphenyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.11 _cell.angle_gamma 90 _cell.entry_id 5KRJ _cell.length_a 55.75 _cell.length_b 81.97 _cell.length_c 58.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KRJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C28 H22 O6 S' _chem_comp.formula_weight 486.536 _chem_comp.id 6WP _chem_comp.mon_nstd_flag . _chem_comp.name 'naphthalen-1-yl (1~{S},2~{R},4~{S})-5,6-bis(4-hydroxyphenyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C03 6WP sing 1 n n C03 C04 6WP doub 2 n y C03 C02 6WP sing 3 n y C04 C05 6WP sing 4 n y C02 C01 6WP doub 5 n y C05 C06 6WP doub 6 n y C01 C06 6WP sing 7 n y C06 C07 6WP sing 8 n n C07 C08 6WP doub 9 n n C07 C16 6WP sing 10 n n C10 C11 6WP doub 11 n y C10 C09 6WP sing 12 n y C11 C12 6WP sing 13 n y C09 C08 6WP sing 14 n n C09 C14 6WP doub 15 n y C08 C15 6WP sing 16 n n C12 O02 6WP sing 17 n n C12 C13 6WP doub 18 n y C16 O03 6WP sing 19 n n C16 C17 6WP sing 20 n n C14 C13 6WP sing 21 n y O03 C15 6WP sing 22 n n C15 C18 6WP sing 23 n n C17 C18 6WP sing 24 n n C18 S01 6WP sing 25 n n O04 S01 6WP doub 26 n n S01 O06 6WP sing 27 n n S01 O05 6WP doub 28 n n C28 C27 6WP doub 29 n y C28 C19 6WP sing 30 n y C27 C26 6WP sing 31 n y C19 O06 6WP sing 32 n n C19 C20 6WP doub 33 n y C26 C25 6WP doub 34 n y C20 C25 6WP sing 35 n y C20 C21 6WP sing 36 n y C25 C24 6WP sing 37 n y C21 C22 6WP doub 38 n y C24 C23 6WP doub 39 n y C22 C23 6WP sing 40 n y C01 H1 6WP sing 41 n n C02 H2 6WP sing 42 n n O01 H3 6WP sing 43 n n C04 H4 6WP sing 44 n n C05 H5 6WP sing 45 n n C10 H6 6WP sing 46 n n C11 H7 6WP sing 47 n n O02 H8 6WP sing 48 n n C13 H9 6WP sing 49 n n C14 H10 6WP sing 50 n n C15 H11 6WP sing 51 n n C16 H12 6WP sing 52 n n C17 H13 6WP sing 53 n n C17 H14 6WP sing 54 n n C18 H15 6WP sing 55 n n C21 H16 6WP sing 56 n n C22 H17 6WP sing 57 n n C23 H18 6WP sing 58 n n C24 H19 6WP sing 59 n n C26 H20 6WP sing 60 n n C27 H21 6WP sing 61 n n C28 H22 6WP sing 62 n n # _atom_sites.entry_id 5KRJ _atom_sites.fract_transf_matrix[1][1] 0.017937 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006925 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 6WP A 1 601 1 6WP 6WP . F 3 6WP B 1 601 1 6WP 6WP . G 4 HOH A 1 701 53 HOH HOH . G 4 HOH A 2 702 8 HOH HOH . G 4 HOH A 3 703 45 HOH HOH . G 4 HOH A 4 704 40 HOH HOH . G 4 HOH A 5 705 48 HOH HOH . G 4 HOH A 6 706 105 HOH HOH . G 4 HOH A 7 707 83 HOH HOH . G 4 HOH A 8 708 38 HOH HOH . G 4 HOH A 9 709 46 HOH HOH . G 4 HOH A 10 710 74 HOH HOH . G 4 HOH A 11 711 4 HOH HOH . G 4 HOH A 12 712 19 HOH HOH . G 4 HOH A 13 713 71 HOH HOH . G 4 HOH A 14 714 20 HOH HOH . G 4 HOH A 15 715 21 HOH HOH . G 4 HOH A 16 716 114 HOH HOH . G 4 HOH A 17 717 16 HOH HOH . G 4 HOH A 18 718 42 HOH HOH . G 4 HOH A 19 719 78 HOH HOH . G 4 HOH A 20 720 41 HOH HOH . G 4 HOH A 21 721 12 HOH HOH . G 4 HOH A 22 722 103 HOH HOH . G 4 HOH A 23 723 43 HOH HOH . G 4 HOH A 24 724 26 HOH HOH . G 4 HOH A 25 725 2 HOH HOH . G 4 HOH A 26 726 13 HOH HOH . G 4 HOH A 27 727 33 HOH HOH . G 4 HOH A 28 728 15 HOH HOH . G 4 HOH A 29 729 70 HOH HOH . G 4 HOH A 30 730 31 HOH HOH . G 4 HOH A 31 731 24 HOH HOH . G 4 HOH A 32 732 76 HOH HOH . G 4 HOH A 33 733 39 HOH HOH . G 4 HOH A 34 734 95 HOH HOH . G 4 HOH A 35 735 27 HOH HOH . G 4 HOH A 36 736 102 HOH HOH . G 4 HOH A 37 737 119 HOH HOH . G 4 HOH A 38 738 113 HOH HOH . G 4 HOH A 39 739 110 HOH HOH . G 4 HOH A 40 740 55 HOH HOH . G 4 HOH A 41 741 72 HOH HOH . G 4 HOH A 42 742 51 HOH HOH . G 4 HOH A 43 743 94 HOH HOH . G 4 HOH A 44 744 93 HOH HOH . G 4 HOH A 45 745 98 HOH HOH . G 4 HOH A 46 746 49 HOH HOH . G 4 HOH A 47 747 118 HOH HOH . G 4 HOH A 48 748 60 HOH HOH . G 4 HOH A 49 749 117 HOH HOH . G 4 HOH A 50 750 30 HOH HOH . G 4 HOH A 51 751 69 HOH HOH . H 4 HOH B 1 701 85 HOH HOH . H 4 HOH B 2 702 67 HOH HOH . H 4 HOH B 3 703 112 HOH HOH . H 4 HOH B 4 704 66 HOH HOH . H 4 HOH B 5 705 79 HOH HOH . H 4 HOH B 6 706 28 HOH HOH . H 4 HOH B 7 707 10 HOH HOH . H 4 HOH B 8 708 80 HOH HOH . H 4 HOH B 9 709 52 HOH HOH . H 4 HOH B 10 710 81 HOH HOH . H 4 HOH B 11 711 90 HOH HOH . H 4 HOH B 12 712 34 HOH HOH . H 4 HOH B 13 713 3 HOH HOH . H 4 HOH B 14 714 54 HOH HOH . H 4 HOH B 15 715 11 HOH HOH . H 4 HOH B 16 716 37 HOH HOH . H 4 HOH B 17 717 63 HOH HOH . H 4 HOH B 18 718 36 HOH HOH . H 4 HOH B 19 719 32 HOH HOH . H 4 HOH B 20 720 9 HOH HOH . H 4 HOH B 21 721 23 HOH HOH . H 4 HOH B 22 722 1 HOH HOH . H 4 HOH B 23 723 88 HOH HOH . H 4 HOH B 24 724 87 HOH HOH . H 4 HOH B 25 725 25 HOH HOH . H 4 HOH B 26 726 121 HOH HOH . H 4 HOH B 27 727 91 HOH HOH . H 4 HOH B 28 728 82 HOH HOH . H 4 HOH B 29 729 59 HOH HOH . H 4 HOH B 30 730 50 HOH HOH . H 4 HOH B 31 731 56 HOH HOH . H 4 HOH B 32 732 106 HOH HOH . H 4 HOH B 33 733 92 HOH HOH . H 4 HOH B 34 734 47 HOH HOH . H 4 HOH B 35 735 61 HOH HOH . H 4 HOH B 36 736 5 HOH HOH . H 4 HOH B 37 737 58 HOH HOH . H 4 HOH B 38 738 57 HOH HOH . H 4 HOH B 39 739 17 HOH HOH . H 4 HOH B 40 740 22 HOH HOH . H 4 HOH B 41 741 120 HOH HOH . H 4 HOH B 42 742 14 HOH HOH . H 4 HOH B 43 743 100 HOH HOH . H 4 HOH B 44 744 116 HOH HOH . H 4 HOH B 45 745 101 HOH HOH . H 4 HOH B 46 746 75 HOH HOH . H 4 HOH B 47 747 108 HOH HOH . H 4 HOH B 48 748 97 HOH HOH . H 4 HOH B 49 749 115 HOH HOH . H 4 HOH B 50 750 96 HOH HOH . H 4 HOH B 51 751 73 HOH HOH . H 4 HOH B 52 752 99 HOH HOH . H 4 HOH B 53 753 107 HOH HOH . H 4 HOH B 54 754 89 HOH HOH . H 4 HOH B 55 755 104 HOH HOH . H 4 HOH B 56 756 109 HOH HOH . H 4 HOH B 57 757 62 HOH HOH . I 4 HOH C 1 701 18 HOH HOH . I 4 HOH C 2 702 68 HOH HOH . J 4 HOH D 1 701 86 HOH HOH . J 4 HOH D 2 702 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6WP . . . F 3 8.742 7.609 32.875 1 34.72 ? C01 6WP 601 B 1 HETATM 2 C C02 6WP . . . F 3 7.457 7.588 33.34 1 35.73 ? C02 6WP 601 B 1 HETATM 3 C C03 6WP . . . F 3 7.174 6.835 34.427 1 33.96 ? C03 6WP 601 B 1 HETATM 4 O O01 6WP . . . F 3 5.966 6.784 34.914 1 35.81 ? O01 6WP 601 B 1 HETATM 5 C C04 6WP . . . F 3 8.157 6.122 35.033 1 32.64 ? C04 6WP 601 B 1 HETATM 6 C C05 6WP . . . F 3 9.44 6.154 34.56 0.73 35.82 ? C05 6WP 601 B 1 HETATM 7 C C06 6WP . . . F 3 9.765 6.912 33.471 0.9 36.49 ? C06 6WP 601 B 1 HETATM 8 C C07 6WP . . . F 3 11.007 6.978 32.954 0.66 40.34 ? C07 6WP 601 B 1 HETATM 9 C C08 6WP . . . F 3 12.14 6.244 33.091 1 41.23 ? C08 6WP 601 B 1 HETATM 10 C C09 6WP . . . F 3 12.492 5.168 33.762 1 40.73 ? C09 6WP 601 B 1 HETATM 11 C C10 6WP . . . F 3 11.762 4.029 33.697 1 39.36 ? C10 6WP 601 B 1 HETATM 12 C C11 6WP . . . F 3 12.189 2.91 34.355 0.9 39.37 ? C11 6WP 601 B 1 HETATM 13 C C12 6WP . . . F 3 13.364 2.892 35.061 1 39.54 ? C12 6WP 601 B 1 HETATM 14 O O02 6WP . . . F 3 13.738 1.786 35.699 1 38.63 ? O02 6WP 601 B 1 HETATM 15 C C13 6WP . . . F 3 14.122 4.014 35.115 1 39.57 ? C13 6WP 601 B 1 HETATM 16 C C14 6WP . . . F 3 13.681 5.136 34.452 0.57 41.13 ? C14 6WP 601 B 1 HETATM 17 C C15 6WP . . . F 3 13.064 6.772 32.204 0.72 42.97 ? C15 6WP 601 B 1 HETATM 18 O O03 6WP . . . F 3 12.746 8.085 32.213 1 36.7 ? O03 6WP 601 B 1 HETATM 19 C C16 6WP . . . F 3 11.419 7.934 31.981 0.72 40.76 ? C16 6WP 601 B 1 HETATM 20 C C17 6WP . . . F 3 11.535 7.386 30.581 0.75 42.91 ? C17 6WP 601 B 1 HETATM 21 C C18 6WP . . . F 3 12.665 6.415 30.773 1 44.91 ? C18 6WP 601 B 1 HETATM 22 S S01 6WP . . . F 3 14.317 6.746 29.926 1 46.92 ? S01 6WP 601 B 1 HETATM 23 O O04 6WP . . . F 3 14.75 8.09 30.219 0.8 50.05 ? O04 6WP 601 B 1 HETATM 24 O O05 6WP . . . F 3 14.144 6.667 28.522 1 43.86 ? O05 6WP 601 B 1 HETATM 25 O O06 6WP . . . F 3 15.241 5.714 30.353 0.71 50.6 ? O06 6WP 601 B 1 HETATM 26 C C19 6WP . . . F 3 16.573 5.976 30.332 0.59 50.66 ? C19 6WP 601 B 1 HETATM 27 C C20 6WP . . . F 3 17.34 5.351 31.286 0.7 49.44 ? C20 6WP 601 B 1 HETATM 28 C C21 6WP . . . F 3 16.756 4.53 32.23 1 47.8 ? C21 6WP 601 B 1 HETATM 29 C C22 6WP . . . F 3 17.506 3.906 33.169 1 49.32 ? C22 6WP 601 B 1 HETATM 30 C C23 6WP . . . F 3 18.855 4.115 33.161 0.66 49.18 ? C23 6WP 601 B 1 HETATM 31 C C24 6WP . . . F 3 19.455 4.941 32.241 0.57 49.36 ? C24 6WP 601 B 1 HETATM 32 C C25 6WP . . . F 3 18.699 5.558 31.302 1 49.94 ? C25 6WP 601 B 1 HETATM 33 C C26 6WP . . . F 3 19.325 6.361 30.402 1 50.63 ? C26 6WP 601 B 1 HETATM 34 C C27 6WP . . . F 3 18.565 6.969 29.447 1 51.14 ? C27 6WP 601 B 1 HETATM 35 C C28 6WP . . . F 3 17.211 6.779 29.419 0.9 51.6 ? C28 6WP 601 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #