data_5KRR
#
_model_server_result.job_id            sW7uvNvKXZiUPB_MYDJEOQ 
_model_server_result.datetime_utc      '2024-10-10 02:26:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5krr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    5KRR 
#
_exptl.entry_id    5KRR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KRR 
_cell.length_a            64.84 
_cell.length_b            149.084 
_cell.length_c            242.512 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KRR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 155 A GLU 152 1_555 F MN MN . A MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc2 A OE2 GLU 234 A GLU 231 1_555 F MN MN . A MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc3 F MN MN . A MN 504 1_555 K O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
metalc ? metalc4 F MN MN . A MN 504 1_555 K O HOH . A HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc5 F MN MN . A MN 504 1_555 K O HOH . A HOH 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? 
metalc ? metalc6 F MN MN . A MN 504 1_555 K O HOH . A HOH 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? 
metalc ? metalc7 B OD1 ASP 153 B ASP 150 1_555 J MN MN . B MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc8 B OE1 GLU 155 B GLU 152 1_555 J MN MN . B MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc9 B OE2 GLU 234 B GLU 231 1_555 J MN MN . B MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc10 J MN MN . B MN 504 1_555 L O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? 
metalc ? metalc11 J MN MN . B MN 504 1_555 L O HOH . B HOH 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
metalc ? metalc12 J MN MN . B MN 504 1_555 L O HOH . B HOH 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5KRR 
_atom_sites.fract_transf_matrix[1][1]    0.015423 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006708 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004124 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 501 1 CL CL . 
D 3 EDO A 1 502 2 EDO EDO . 
E 3 EDO A 1 503 3 EDO EDO . 
F 4 MN A 1 504 1 MN MN . 
G 3 EDO B 1 501 1 EDO EDO . 
H 3 EDO B 1 502 4 EDO EDO . 
I 3 EDO B 1 503 5 EDO EDO . 
J 4 MN B 1 504 2 MN MN . 
K 5 HOH A 1 601 61 HOH HOH . 
K 5 HOH A 2 602 199 HOH HOH . 
K 5 HOH A 3 603 200 HOH HOH . 
K 5 HOH A 4 604 110 HOH HOH . 
K 5 HOH A 5 605 182 HOH HOH . 
K 5 HOH A 6 606 40 HOH HOH . 
K 5 HOH A 7 607 5 HOH HOH . 
K 5 HOH A 8 608 16 HOH HOH . 
K 5 HOH A 9 609 117 HOH HOH . 
K 5 HOH A 10 610 3 HOH HOH . 
K 5 HOH A 11 611 64 HOH HOH . 
K 5 HOH A 12 612 153 HOH HOH . 
K 5 HOH A 13 613 44 HOH HOH . 
K 5 HOH A 14 614 154 HOH HOH . 
K 5 HOH A 15 615 30 HOH HOH . 
K 5 HOH A 16 616 150 HOH HOH . 
K 5 HOH A 17 617 4 HOH HOH . 
K 5 HOH A 18 618 119 HOH HOH . 
K 5 HOH A 19 619 39 HOH HOH . 
K 5 HOH A 20 620 14 HOH HOH . 
K 5 HOH A 21 621 63 HOH HOH . 
K 5 HOH A 22 622 160 HOH HOH . 
K 5 HOH A 23 623 25 HOH HOH . 
K 5 HOH A 24 624 15 HOH HOH . 
K 5 HOH A 25 625 17 HOH HOH . 
K 5 HOH A 26 626 135 HOH HOH . 
K 5 HOH A 27 627 180 HOH HOH . 
K 5 HOH A 28 628 183 HOH HOH . 
K 5 HOH A 29 629 202 HOH HOH . 
K 5 HOH A 30 630 54 HOH HOH . 
K 5 HOH A 31 631 201 HOH HOH . 
K 5 HOH A 32 632 35 HOH HOH . 
K 5 HOH A 33 633 206 HOH HOH . 
K 5 HOH A 34 634 178 HOH HOH . 
K 5 HOH A 35 635 65 HOH HOH . 
K 5 HOH A 36 636 149 HOH HOH . 
K 5 HOH A 37 637 29 HOH HOH . 
K 5 HOH A 38 638 66 HOH HOH . 
K 5 HOH A 39 639 27 HOH HOH . 
K 5 HOH A 40 640 46 HOH HOH . 
K 5 HOH A 41 641 175 HOH HOH . 
K 5 HOH A 42 642 20 HOH HOH . 
K 5 HOH A 43 643 1 HOH HOH . 
K 5 HOH A 44 644 59 HOH HOH . 
K 5 HOH A 45 645 179 HOH HOH . 
K 5 HOH A 46 646 53 HOH HOH . 
K 5 HOH A 47 647 19 HOH HOH . 
K 5 HOH A 48 648 181 HOH HOH . 
K 5 HOH A 49 649 120 HOH HOH . 
K 5 HOH A 50 650 48 HOH HOH . 
K 5 HOH A 51 651 113 HOH HOH . 
K 5 HOH A 52 652 41 HOH HOH . 
K 5 HOH A 53 653 13 HOH HOH . 
K 5 HOH A 54 654 57 HOH HOH . 
K 5 HOH A 55 655 124 HOH HOH . 
K 5 HOH A 56 656 114 HOH HOH . 
K 5 HOH A 57 657 56 HOH HOH . 
K 5 HOH A 58 658 122 HOH HOH . 
K 5 HOH A 59 659 55 HOH HOH . 
K 5 HOH A 60 660 111 HOH HOH . 
K 5 HOH A 61 661 205 HOH HOH . 
K 5 HOH A 62 662 127 HOH HOH . 
K 5 HOH A 63 663 43 HOH HOH . 
K 5 HOH A 64 664 156 HOH HOH . 
K 5 HOH A 65 665 107 HOH HOH . 
K 5 HOH A 66 666 155 HOH HOH . 
K 5 HOH A 67 667 177 HOH HOH . 
K 5 HOH A 68 668 121 HOH HOH . 
K 5 HOH A 69 669 26 HOH HOH . 
K 5 HOH A 70 670 109 HOH HOH . 
K 5 HOH A 71 671 23 HOH HOH . 
K 5 HOH A 72 672 159 HOH HOH . 
K 5 HOH A 73 673 32 HOH HOH . 
K 5 HOH A 74 674 18 HOH HOH . 
K 5 HOH A 75 675 52 HOH HOH . 
K 5 HOH A 76 676 67 HOH HOH . 
K 5 HOH A 77 677 1 HOH HOH . 
K 5 HOH A 78 678 45 HOH HOH . 
K 5 HOH A 79 679 203 HOH HOH . 
K 5 HOH A 80 680 204 HOH HOH . 
K 5 HOH A 81 681 146 HOH HOH . 
K 5 HOH A 82 682 84 HOH HOH . 
K 5 HOH A 83 683 3 HOH HOH . 
K 5 HOH A 84 684 36 HOH HOH . 
K 5 HOH A 85 685 148 HOH HOH . 
K 5 HOH A 86 686 60 HOH HOH . 
K 5 HOH A 87 687 152 HOH HOH . 
K 5 HOH A 88 688 33 HOH HOH . 
K 5 HOH A 89 689 47 HOH HOH . 
K 5 HOH A 90 690 157 HOH HOH . 
K 5 HOH A 91 691 24 HOH HOH . 
K 5 HOH A 92 692 145 HOH HOH . 
K 5 HOH A 93 693 123 HOH HOH . 
K 5 HOH A 94 694 118 HOH HOH . 
K 5 HOH A 95 695 108 HOH HOH . 
K 5 HOH A 96 696 210 HOH HOH . 
K 5 HOH A 97 697 147 HOH HOH . 
K 5 HOH A 98 698 125 HOH HOH . 
K 5 HOH A 99 699 37 HOH HOH . 
K 5 HOH A 100 700 115 HOH HOH . 
K 5 HOH A 101 701 193 HOH HOH . 
K 5 HOH A 102 702 58 HOH HOH . 
K 5 HOH A 103 703 126 HOH HOH . 
K 5 HOH A 104 704 51 HOH HOH . 
K 5 HOH A 105 705 34 HOH HOH . 
K 5 HOH A 106 706 50 HOH HOH . 
K 5 HOH A 107 707 49 HOH HOH . 
K 5 HOH A 108 708 207 HOH HOH . 
K 5 HOH A 109 709 21 HOH HOH . 
K 5 HOH A 110 710 31 HOH HOH . 
K 5 HOH A 111 711 112 HOH HOH . 
L 5 HOH B 1 601 197 HOH HOH . 
L 5 HOH B 2 602 188 HOH HOH . 
L 5 HOH B 3 603 128 HOH HOH . 
L 5 HOH B 4 604 198 HOH HOH . 
L 5 HOH B 5 605 89 HOH HOH . 
L 5 HOH B 6 606 71 HOH HOH . 
L 5 HOH B 7 607 38 HOH HOH . 
L 5 HOH B 8 608 136 HOH HOH . 
L 5 HOH B 9 609 80 HOH HOH . 
L 5 HOH B 10 610 96 HOH HOH . 
L 5 HOH B 11 611 187 HOH HOH . 
L 5 HOH B 12 612 169 HOH HOH . 
L 5 HOH B 13 613 133 HOH HOH . 
L 5 HOH B 14 614 88 HOH HOH . 
L 5 HOH B 15 615 173 HOH HOH . 
L 5 HOH B 16 616 62 HOH HOH . 
L 5 HOH B 17 617 81 HOH HOH . 
L 5 HOH B 18 618 85 HOH HOH . 
L 5 HOH B 19 619 70 HOH HOH . 
L 5 HOH B 20 620 94 HOH HOH . 
L 5 HOH B 21 621 164 HOH HOH . 
L 5 HOH B 22 622 22 HOH HOH . 
L 5 HOH B 23 623 140 HOH HOH . 
L 5 HOH B 24 624 209 HOH HOH . 
L 5 HOH B 25 625 4 HOH HOH . 
L 5 HOH B 26 626 105 HOH HOH . 
L 5 HOH B 27 627 74 HOH HOH . 
L 5 HOH B 28 628 192 HOH HOH . 
L 5 HOH B 29 629 83 HOH HOH . 
L 5 HOH B 30 630 106 HOH HOH . 
L 5 HOH B 31 631 189 HOH HOH . 
L 5 HOH B 32 632 87 HOH HOH . 
L 5 HOH B 33 633 167 HOH HOH . 
L 5 HOH B 34 634 104 HOH HOH . 
L 5 HOH B 35 635 139 HOH HOH . 
L 5 HOH B 36 636 11 HOH HOH . 
L 5 HOH B 37 637 92 HOH HOH . 
L 5 HOH B 38 638 102 HOH HOH . 
L 5 HOH B 39 639 130 HOH HOH . 
L 5 HOH B 40 640 151 HOH HOH . 
L 5 HOH B 41 641 78 HOH HOH . 
L 5 HOH B 42 642 141 HOH HOH . 
L 5 HOH B 43 643 116 HOH HOH . 
L 5 HOH B 44 644 82 HOH HOH . 
L 5 HOH B 45 645 165 HOH HOH . 
L 5 HOH B 46 646 142 HOH HOH . 
L 5 HOH B 47 647 190 HOH HOH . 
L 5 HOH B 48 648 132 HOH HOH . 
L 5 HOH B 49 649 97 HOH HOH . 
L 5 HOH B 50 650 69 HOH HOH . 
L 5 HOH B 51 651 134 HOH HOH . 
L 5 HOH B 52 652 76 HOH HOH . 
L 5 HOH B 53 653 162 HOH HOH . 
L 5 HOH B 54 654 184 HOH HOH . 
L 5 HOH B 55 655 99 HOH HOH . 
L 5 HOH B 56 656 168 HOH HOH . 
L 5 HOH B 57 657 98 HOH HOH . 
L 5 HOH B 58 658 91 HOH HOH . 
L 5 HOH B 59 659 131 HOH HOH . 
L 5 HOH B 60 660 161 HOH HOH . 
L 5 HOH B 61 661 1 HOH HOH . 
L 5 HOH B 62 662 196 HOH HOH . 
L 5 HOH B 63 663 158 HOH HOH . 
L 5 HOH B 64 664 95 HOH HOH . 
L 5 HOH B 65 665 103 HOH HOH . 
L 5 HOH B 66 666 90 HOH HOH . 
L 5 HOH B 67 667 144 HOH HOH . 
L 5 HOH B 68 668 1 HOH HOH . 
L 5 HOH B 69 669 28 HOH HOH . 
L 5 HOH B 70 670 174 HOH HOH . 
L 5 HOH B 71 671 93 HOH HOH . 
L 5 HOH B 72 672 195 HOH HOH . 
L 5 HOH B 73 673 172 HOH HOH . 
L 5 HOH B 74 674 191 HOH HOH . 
L 5 HOH B 75 675 163 HOH HOH . 
L 5 HOH B 76 676 12 HOH HOH . 
L 5 HOH B 77 677 138 HOH HOH . 
L 5 HOH B 78 678 208 HOH HOH . 
L 5 HOH B 79 679 143 HOH HOH . 
L 5 HOH B 80 680 186 HOH HOH . 
L 5 HOH B 81 681 68 HOH HOH . 
L 5 HOH B 82 682 2 HOH HOH . 
L 5 HOH B 83 683 166 HOH HOH . 
L 5 HOH B 84 684 79 HOH HOH . 
L 5 HOH B 85 685 100 HOH HOH . 
L 5 HOH B 86 686 176 HOH HOH . 
L 5 HOH B 87 687 137 HOH HOH . 
L 5 HOH B 88 688 185 HOH HOH . 
L 5 HOH B 89 689 72 HOH HOH . 
L 5 HOH B 90 690 171 HOH HOH . 
L 5 HOH B 91 691 73 HOH HOH . 
L 5 HOH B 92 692 77 HOH HOH . 
L 5 HOH B 93 693 86 HOH HOH . 
L 5 HOH B 94 694 170 HOH HOH . 
L 5 HOH B 95 695 194 HOH HOH . 
L 5 HOH B 96 696 129 HOH HOH . 
L 5 HOH B 97 697 101 HOH HOH . 
L 5 HOH B 98 698 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 7.253 18.854 107.47 1 37.84 ? C1 EDO 502 A 1 
HETATM 2 O O1 EDO . . . D 3 8.394 17.998 107.33 1 40.98 ? O1 EDO 502 A 1 
HETATM 3 C C2 EDO . . . D 3 6.803 19.399 106.117 1 38.76 ? C2 EDO 502 A 1 
HETATM 4 O O2 EDO . . . D 3 7.529 20.561 105.681 1 37.22 ? O2 EDO 502 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#