data_5KRS
#
_model_server_result.job_id            gp_Z6NVHH1eYkFydl0fQUw 
_model_server_result.datetime_utc      '2024-11-26 05:34:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5krs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    5KRS 
#
_exptl.entry_id    5KRS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5KRS 
_cell.length_a            71.908 
_cell.length_b            71.908 
_cell.length_c            67.684 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KRS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 10 A ASP 64 1_555 A N CAF 11 A CAF 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale2 A C CAF 11 A CAF 65 1_555 A N THR 12 A THR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C ALA 75 A ALA 129 1_555 A N CAF 76 A CAF 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale4 A C CAF 76 A CAF 130 1_555 A N TRP 77 A TRP 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 113 n n 
S C1 DMS sing 114 n n 
S C2 DMS sing 115 n n 
C1 H11 DMS sing 116 n n 
C1 H12 DMS sing 117 n n 
C1 H13 DMS sing 118 n n 
C2 H21 DMS sing 119 n n 
C2 H22 DMS sing 120 n n 
C2 H23 DMS sing 121 n n 
#
_atom_sites.entry_id                     5KRS 
_atom_sites.fract_transf_matrix[1][1]    0.013907 
_atom_sites.fract_transf_matrix[1][2]    0.008029 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016058 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014775 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DMS A 1 301 1 DMS DMS . 
C 3 6XI A 1 302 1 6XI 363 . 
D 3 6XI A 1 303 1 6XI 363 . 
E 4 HOH A 1 401 23 HOH HOH . 
E 4 HOH A 2 402 136 HOH HOH . 
E 4 HOH A 3 403 95 HOH HOH . 
E 4 HOH A 4 404 82 HOH HOH . 
E 4 HOH A 5 405 72 HOH HOH . 
E 4 HOH A 6 406 105 HOH HOH . 
E 4 HOH A 7 407 62 HOH HOH . 
E 4 HOH A 8 408 29 HOH HOH . 
E 4 HOH A 9 409 59 HOH HOH . 
E 4 HOH A 10 410 41 HOH HOH . 
E 4 HOH A 11 411 44 HOH HOH . 
E 4 HOH A 12 412 10 HOH HOH . 
E 4 HOH A 13 413 63 HOH HOH . 
E 4 HOH A 14 414 28 HOH HOH . 
E 4 HOH A 15 415 55 HOH HOH . 
E 4 HOH A 16 416 117 HOH HOH . 
E 4 HOH A 17 417 20 HOH HOH . 
E 4 HOH A 18 418 92 HOH HOH . 
E 4 HOH A 19 419 67 HOH HOH . 
E 4 HOH A 20 420 51 HOH HOH . 
E 4 HOH A 21 421 17 HOH HOH . 
E 4 HOH A 22 422 98 HOH HOH . 
E 4 HOH A 23 423 7 HOH HOH . 
E 4 HOH A 24 424 83 HOH HOH . 
E 4 HOH A 25 425 14 HOH HOH . 
E 4 HOH A 26 426 103 HOH HOH . 
E 4 HOH A 27 427 76 HOH HOH . 
E 4 HOH A 28 428 74 HOH HOH . 
E 4 HOH A 29 429 115 HOH HOH . 
E 4 HOH A 30 430 56 HOH HOH . 
E 4 HOH A 31 431 16 HOH HOH . 
E 4 HOH A 32 432 18 HOH HOH . 
E 4 HOH A 33 433 69 HOH HOH . 
E 4 HOH A 34 434 19 HOH HOH . 
E 4 HOH A 35 435 38 HOH HOH . 
E 4 HOH A 36 436 71 HOH HOH . 
E 4 HOH A 37 437 25 HOH HOH . 
E 4 HOH A 38 438 100 HOH HOH . 
E 4 HOH A 39 439 47 HOH HOH . 
E 4 HOH A 40 440 4 HOH HOH . 
E 4 HOH A 41 441 39 HOH HOH . 
E 4 HOH A 42 442 36 HOH HOH . 
E 4 HOH A 43 443 6 HOH HOH . 
E 4 HOH A 44 444 13 HOH HOH . 
E 4 HOH A 45 445 101 HOH HOH . 
E 4 HOH A 46 446 68 HOH HOH . 
E 4 HOH A 47 447 31 HOH HOH . 
E 4 HOH A 48 448 9 HOH HOH . 
E 4 HOH A 49 449 5 HOH HOH . 
E 4 HOH A 50 450 3 HOH HOH . 
E 4 HOH A 51 451 2 HOH HOH . 
E 4 HOH A 52 452 11 HOH HOH . 
E 4 HOH A 53 453 94 HOH HOH . 
E 4 HOH A 54 454 64 HOH HOH . 
E 4 HOH A 55 455 26 HOH HOH . 
E 4 HOH A 56 456 77 HOH HOH . 
E 4 HOH A 57 457 35 HOH HOH . 
E 4 HOH A 58 458 48 HOH HOH . 
E 4 HOH A 59 459 1 HOH HOH . 
E 4 HOH A 60 460 81 HOH HOH . 
E 4 HOH A 61 461 135 HOH HOH . 
E 4 HOH A 62 462 12 HOH HOH . 
E 4 HOH A 63 463 27 HOH HOH . 
E 4 HOH A 64 464 119 HOH HOH . 
E 4 HOH A 65 465 53 HOH HOH . 
E 4 HOH A 66 466 120 HOH HOH . 
E 4 HOH A 67 467 50 HOH HOH . 
E 4 HOH A 68 468 108 HOH HOH . 
E 4 HOH A 69 469 84 HOH HOH . 
E 4 HOH A 70 470 46 HOH HOH . 
E 4 HOH A 71 471 32 HOH HOH . 
E 4 HOH A 72 472 15 HOH HOH . 
E 4 HOH A 73 473 88 HOH HOH . 
E 4 HOH A 74 474 112 HOH HOH . 
E 4 HOH A 75 475 93 HOH HOH . 
E 4 HOH A 76 476 8 HOH HOH . 
E 4 HOH A 77 477 24 HOH HOH . 
E 4 HOH A 78 478 70 HOH HOH . 
E 4 HOH A 79 479 21 HOH HOH . 
E 4 HOH A 80 480 49 HOH HOH . 
E 4 HOH A 81 481 102 HOH HOH . 
E 4 HOH A 82 482 54 HOH HOH . 
E 4 HOH A 83 483 125 HOH HOH . 
E 4 HOH A 84 484 75 HOH HOH . 
E 4 HOH A 85 485 30 HOH HOH . 
E 4 HOH A 86 486 37 HOH HOH . 
E 4 HOH A 87 487 78 HOH HOH . 
E 4 HOH A 88 488 58 HOH HOH . 
E 4 HOH A 89 489 57 HOH HOH . 
E 4 HOH A 90 490 85 HOH HOH . 
E 4 HOH A 91 491 34 HOH HOH . 
E 4 HOH A 92 492 86 HOH HOH . 
E 4 HOH A 93 493 128 HOH HOH . 
E 4 HOH A 94 494 96 HOH HOH . 
E 4 HOH A 95 495 126 HOH HOH . 
E 4 HOH A 96 496 132 HOH HOH . 
E 4 HOH A 97 497 124 HOH HOH . 
E 4 HOH A 98 498 130 HOH HOH . 
E 4 HOH A 99 499 118 HOH HOH . 
E 4 HOH A 100 500 79 HOH HOH . 
E 4 HOH A 101 501 109 HOH HOH . 
E 4 HOH A 102 502 97 HOH HOH . 
E 4 HOH A 103 503 110 HOH HOH . 
E 4 HOH A 104 504 90 HOH HOH . 
E 4 HOH A 105 505 61 HOH HOH . 
E 4 HOH A 106 506 129 HOH HOH . 
E 4 HOH A 107 507 131 HOH HOH . 
E 4 HOH A 108 508 134 HOH HOH . 
E 4 HOH A 109 509 42 HOH HOH . 
E 4 HOH A 110 510 113 HOH HOH . 
E 4 HOH A 111 511 52 HOH HOH . 
E 4 HOH A 112 512 123 HOH HOH . 
E 4 HOH A 113 513 91 HOH HOH . 
E 4 HOH A 114 514 45 HOH HOH . 
E 4 HOH A 115 515 89 HOH HOH . 
E 4 HOH A 116 516 73 HOH HOH . 
E 4 HOH A 117 517 111 HOH HOH . 
E 4 HOH A 118 518 133 HOH HOH . 
E 4 HOH A 119 519 65 HOH HOH . 
E 4 HOH A 120 520 114 HOH HOH . 
E 4 HOH A 121 521 104 HOH HOH . 
E 4 HOH A 122 522 60 HOH HOH . 
E 4 HOH A 123 523 87 HOH HOH . 
E 4 HOH A 124 524 43 HOH HOH . 
E 4 HOH A 125 525 40 HOH HOH . 
E 4 HOH A 126 526 80 HOH HOH . 
E 4 HOH A 127 527 127 HOH HOH . 
E 4 HOH A 128 528 121 HOH HOH . 
E 4 HOH A 129 529 122 HOH HOH . 
E 4 HOH A 130 530 99 HOH HOH . 
E 4 HOH A 131 531 106 HOH HOH . 
E 4 HOH A 132 532 107 HOH HOH . 
E 4 HOH A 133 533 33 HOH HOH . 
E 4 HOH A 134 534 22 HOH HOH . 
E 4 HOH A 135 535 66 HOH HOH . 
E 4 HOH A 136 536 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . B 2 32.998 147.502 28.508 1 45.93 ? S DMS 301 A 1 
HETATM 2 O O DMS . . . B 2 32.494 148.325 27.167 1 57.18 ? O DMS 301 A 1 
HETATM 3 C C1 DMS . . . B 2 31.61 146.68 29.346 1 42.02 ? C1 DMS 301 A 1 
HETATM 4 C C2 DMS . . . B 2 33.746 148.688 29.668 1 25.5 ? C2 DMS 301 A 1 
HETATM 5 H H11 DMS . . . B 2 31.935 146.226 30.139 1 50.42 ? H11 DMS 301 A 1 
HETATM 6 H H12 DMS . . . B 2 30.949 147.342 29.6 1 50.42 ? H12 DMS 301 A 1 
HETATM 7 H H13 DMS . . . B 2 31.207 146.034 28.746 1 50.42 ? H13 DMS 301 A 1 
HETATM 8 H H21 DMS . . . B 2 33.09 149.36 29.911 1 30.6 ? H21 DMS 301 A 1 
HETATM 9 H H22 DMS . . . B 2 34.04 148.22 30.465 1 30.6 ? H22 DMS 301 A 1 
HETATM 10 H H23 DMS . . . B 2 34.507 149.118 29.246 1 30.6 ? H23 DMS 301 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           10 
#