data_5KRS # _model_server_result.job_id i8QHtOTjOVk-vwzMsJqxgg _model_server_result.datetime_utc '2024-11-26 05:54:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5krs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5KRS # _exptl.entry_id 5KRS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 193.222 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-pyrrol-1-ylthiophene-2-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KRS _cell.length_a 71.908 _cell.length_b 71.908 _cell.length_c 67.684 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KRS _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 10 A ASP 64 1_555 A N CAF 11 A CAF 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A C CAF 11 A CAF 65 1_555 A N THR 12 A THR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C ALA 75 A ALA 129 1_555 A N CAF 76 A CAF 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale4 A C CAF 76 A CAF 130 1_555 A N TRP 77 A TRP 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? # _chem_comp.formula 'C9 H7 N O2 S' _chem_comp.formula_weight 193.222 _chem_comp.id 6XI _chem_comp.mon_nstd_flag . _chem_comp.name '3-pyrrol-1-ylthiophene-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C12 6XI doub 1 n y C11 C10 6XI sing 2 n y C12 N08 6XI sing 3 n y O01 C02 6XI doub 4 n n C02 C03 6XI sing 5 n n C02 O13 6XI sing 6 n n C03 C04 6XI doub 7 n y C03 S07 6XI sing 8 n y C04 C05 6XI sing 9 n y C04 N08 6XI sing 10 n n C05 C06 6XI doub 11 n y C06 S07 6XI sing 12 n y N08 C09 6XI sing 13 n y C09 C10 6XI doub 14 n y C11 H111 6XI sing 15 n n C12 H121 6XI sing 16 n n C05 H051 6XI sing 17 n n C06 H061 6XI sing 18 n n C09 H091 6XI sing 19 n n C10 H101 6XI sing 20 n n O13 H1 6XI sing 21 n n # _atom_sites.entry_id 5KRS _atom_sites.fract_transf_matrix[1][1] 0.013907 _atom_sites.fract_transf_matrix[1][2] 0.008029 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 301 1 DMS DMS . C 3 6XI A 1 302 1 6XI 363 . D 3 6XI A 1 303 1 6XI 363 . E 4 HOH A 1 401 23 HOH HOH . E 4 HOH A 2 402 136 HOH HOH . E 4 HOH A 3 403 95 HOH HOH . E 4 HOH A 4 404 82 HOH HOH . E 4 HOH A 5 405 72 HOH HOH . E 4 HOH A 6 406 105 HOH HOH . E 4 HOH A 7 407 62 HOH HOH . E 4 HOH A 8 408 29 HOH HOH . E 4 HOH A 9 409 59 HOH HOH . E 4 HOH A 10 410 41 HOH HOH . E 4 HOH A 11 411 44 HOH HOH . E 4 HOH A 12 412 10 HOH HOH . E 4 HOH A 13 413 63 HOH HOH . E 4 HOH A 14 414 28 HOH HOH . E 4 HOH A 15 415 55 HOH HOH . E 4 HOH A 16 416 117 HOH HOH . E 4 HOH A 17 417 20 HOH HOH . E 4 HOH A 18 418 92 HOH HOH . E 4 HOH A 19 419 67 HOH HOH . E 4 HOH A 20 420 51 HOH HOH . E 4 HOH A 21 421 17 HOH HOH . E 4 HOH A 22 422 98 HOH HOH . E 4 HOH A 23 423 7 HOH HOH . E 4 HOH A 24 424 83 HOH HOH . E 4 HOH A 25 425 14 HOH HOH . E 4 HOH A 26 426 103 HOH HOH . E 4 HOH A 27 427 76 HOH HOH . E 4 HOH A 28 428 74 HOH HOH . E 4 HOH A 29 429 115 HOH HOH . E 4 HOH A 30 430 56 HOH HOH . E 4 HOH A 31 431 16 HOH HOH . E 4 HOH A 32 432 18 HOH HOH . E 4 HOH A 33 433 69 HOH HOH . E 4 HOH A 34 434 19 HOH HOH . E 4 HOH A 35 435 38 HOH HOH . E 4 HOH A 36 436 71 HOH HOH . E 4 HOH A 37 437 25 HOH HOH . E 4 HOH A 38 438 100 HOH HOH . E 4 HOH A 39 439 47 HOH HOH . E 4 HOH A 40 440 4 HOH HOH . E 4 HOH A 41 441 39 HOH HOH . E 4 HOH A 42 442 36 HOH HOH . E 4 HOH A 43 443 6 HOH HOH . E 4 HOH A 44 444 13 HOH HOH . E 4 HOH A 45 445 101 HOH HOH . E 4 HOH A 46 446 68 HOH HOH . E 4 HOH A 47 447 31 HOH HOH . E 4 HOH A 48 448 9 HOH HOH . E 4 HOH A 49 449 5 HOH HOH . E 4 HOH A 50 450 3 HOH HOH . E 4 HOH A 51 451 2 HOH HOH . E 4 HOH A 52 452 11 HOH HOH . E 4 HOH A 53 453 94 HOH HOH . E 4 HOH A 54 454 64 HOH HOH . E 4 HOH A 55 455 26 HOH HOH . E 4 HOH A 56 456 77 HOH HOH . E 4 HOH A 57 457 35 HOH HOH . E 4 HOH A 58 458 48 HOH HOH . E 4 HOH A 59 459 1 HOH HOH . E 4 HOH A 60 460 81 HOH HOH . E 4 HOH A 61 461 135 HOH HOH . E 4 HOH A 62 462 12 HOH HOH . E 4 HOH A 63 463 27 HOH HOH . E 4 HOH A 64 464 119 HOH HOH . E 4 HOH A 65 465 53 HOH HOH . E 4 HOH A 66 466 120 HOH HOH . E 4 HOH A 67 467 50 HOH HOH . E 4 HOH A 68 468 108 HOH HOH . E 4 HOH A 69 469 84 HOH HOH . E 4 HOH A 70 470 46 HOH HOH . E 4 HOH A 71 471 32 HOH HOH . E 4 HOH A 72 472 15 HOH HOH . E 4 HOH A 73 473 88 HOH HOH . E 4 HOH A 74 474 112 HOH HOH . E 4 HOH A 75 475 93 HOH HOH . E 4 HOH A 76 476 8 HOH HOH . E 4 HOH A 77 477 24 HOH HOH . E 4 HOH A 78 478 70 HOH HOH . E 4 HOH A 79 479 21 HOH HOH . E 4 HOH A 80 480 49 HOH HOH . E 4 HOH A 81 481 102 HOH HOH . E 4 HOH A 82 482 54 HOH HOH . E 4 HOH A 83 483 125 HOH HOH . E 4 HOH A 84 484 75 HOH HOH . E 4 HOH A 85 485 30 HOH HOH . E 4 HOH A 86 486 37 HOH HOH . E 4 HOH A 87 487 78 HOH HOH . E 4 HOH A 88 488 58 HOH HOH . E 4 HOH A 89 489 57 HOH HOH . E 4 HOH A 90 490 85 HOH HOH . E 4 HOH A 91 491 34 HOH HOH . E 4 HOH A 92 492 86 HOH HOH . E 4 HOH A 93 493 128 HOH HOH . E 4 HOH A 94 494 96 HOH HOH . E 4 HOH A 95 495 126 HOH HOH . E 4 HOH A 96 496 132 HOH HOH . E 4 HOH A 97 497 124 HOH HOH . E 4 HOH A 98 498 130 HOH HOH . E 4 HOH A 99 499 118 HOH HOH . E 4 HOH A 100 500 79 HOH HOH . E 4 HOH A 101 501 109 HOH HOH . E 4 HOH A 102 502 97 HOH HOH . E 4 HOH A 103 503 110 HOH HOH . E 4 HOH A 104 504 90 HOH HOH . E 4 HOH A 105 505 61 HOH HOH . E 4 HOH A 106 506 129 HOH HOH . E 4 HOH A 107 507 131 HOH HOH . E 4 HOH A 108 508 134 HOH HOH . E 4 HOH A 109 509 42 HOH HOH . E 4 HOH A 110 510 113 HOH HOH . E 4 HOH A 111 511 52 HOH HOH . E 4 HOH A 112 512 123 HOH HOH . E 4 HOH A 113 513 91 HOH HOH . E 4 HOH A 114 514 45 HOH HOH . E 4 HOH A 115 515 89 HOH HOH . E 4 HOH A 116 516 73 HOH HOH . E 4 HOH A 117 517 111 HOH HOH . E 4 HOH A 118 518 133 HOH HOH . E 4 HOH A 119 519 65 HOH HOH . E 4 HOH A 120 520 114 HOH HOH . E 4 HOH A 121 521 104 HOH HOH . E 4 HOH A 122 522 60 HOH HOH . E 4 HOH A 123 523 87 HOH HOH . E 4 HOH A 124 524 43 HOH HOH . E 4 HOH A 125 525 40 HOH HOH . E 4 HOH A 126 526 80 HOH HOH . E 4 HOH A 127 527 127 HOH HOH . E 4 HOH A 128 528 121 HOH HOH . E 4 HOH A 129 529 122 HOH HOH . E 4 HOH A 130 530 99 HOH HOH . E 4 HOH A 131 531 106 HOH HOH . E 4 HOH A 132 532 107 HOH HOH . E 4 HOH A 133 533 33 HOH HOH . E 4 HOH A 134 534 22 HOH HOH . E 4 HOH A 135 535 66 HOH HOH . E 4 HOH A 136 536 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 6XI . . . D 3 31.246 109.711 15.31 1 25.19 ? C11 6XI 303 A 1 HETATM 2 C C12 6XI . . . D 3 30.156 110.549 15.556 1 39.28 ? C12 6XI 303 A 1 HETATM 3 O O01 6XI . . . D 3 26.942 109.732 15.451 1 42.98 -1 O01 6XI 303 A 1 HETATM 4 C C02 6XI . . . D 3 26.567 110.788 16.034 1 42.65 ? C02 6XI 303 A 1 HETATM 5 C C03 6XI . . . D 3 27.297 111.273 17.269 1 12.86 ? C03 6XI 303 A 1 HETATM 6 C C04 6XI . . . D 3 28.676 111.075 17.601 1 22.61 ? C04 6XI 303 A 1 HETATM 7 C C05 6XI . . . D 3 28.901 111.833 18.985 1 28.56 ? C05 6XI 303 A 1 HETATM 8 C C06 6XI . . . D 3 27.661 112.441 19.435 1 23.65 ? C06 6XI 303 A 1 HETATM 9 S S07 6XI . . . D 3 26.576 112.173 18.359 1 34.36 ? S07 6XI 303 A 1 HETATM 10 N N08 6XI . . . D 3 29.742 110.37 16.904 1 36.31 ? N08 6XI 303 A 1 HETATM 11 C C09 6XI . . . D 3 30.607 109.406 17.482 1 41.2 ? C09 6XI 303 A 1 HETATM 12 C C10 6XI . . . D 3 31.522 108.995 16.497 1 28.93 ? C10 6XI 303 A 1 HETATM 13 O O13 6XI . . . D 3 25.584 111.476 15.646 1 39.12 ? O13 6XI 303 A 1 HETATM 14 H H111 6XI . . . D 3 31.694 109.621 14.501 1 30.23 ? H111 6XI 303 A 1 HETATM 15 H H121 6XI . . . D 3 29.772 111.134 14.944 1 47.14 ? H121 6XI 303 A 1 HETATM 16 H H051 6XI . . . D 3 29.705 111.862 19.451 1 34.27 ? H051 6XI 303 A 1 HETATM 17 H H061 6XI . . . D 3 27.547 112.943 20.21 1 28.38 ? H061 6XI 303 A 1 HETATM 18 H H091 6XI . . . D 3 30.572 109.097 18.358 1 49.44 ? H091 6XI 303 A 1 HETATM 19 H H101 6XI . . . D 3 32.192 108.36 16.607 1 34.72 ? H101 6XI 303 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 726 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 19 #