data_5KRT # _model_server_result.job_id VayR8eQFQIRulTTz9pbfsA _model_server_result.datetime_utc '2024-11-29 19:23:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5krt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5KRT # _exptl.entry_id 5KRT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 262.113 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[2,5-bis(chloranyl)pyrrol-1-yl]thiophene-2-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KRT _cell.length_a 72.069 _cell.length_b 72.069 _cell.length_c 66.348 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KRT _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 22.116 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 10 A ASP 64 1_555 A N CAF 11 A CAF 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 A C CAF 11 A CAF 65 1_555 A N THR 12 A THR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C ALA 75 A ALA 129 1_555 A N CAF 76 A CAF 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 A C CAF 76 A CAF 130 1_555 A N TRP 77 A TRP 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? # _chem_comp.formula 'C9 H5 Cl2 N O2 S' _chem_comp.formula_weight 262.113 _chem_comp.id 6W6 _chem_comp.mon_nstd_flag . _chem_comp.name '3-[2,5-bis(chloranyl)pyrrol-1-yl]thiophene-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 6W6 doub 1 n n C02 O03 6W6 sing 2 n n C02 C04 6W6 sing 3 n n C04 C05 6W6 doub 4 n y C04 S15 6W6 sing 5 n y C05 N06 6W6 sing 6 n n C05 C13 6W6 sing 7 n y N06 C07 6W6 sing 8 n y N06 C11 6W6 sing 9 n y C07 CL1 6W6 sing 10 n n C07 C09 6W6 doub 11 n y C09 C10 6W6 sing 12 n y C10 C11 6W6 doub 13 n y C11 CL2 6W6 sing 14 n n C13 C14 6W6 doub 15 n y C14 S15 6W6 sing 16 n y O03 H1 6W6 sing 17 n n C09 H091 6W6 sing 18 n n C10 H101 6W6 sing 19 n n C13 H131 6W6 sing 20 n n C14 H141 6W6 sing 21 n n # _atom_sites.entry_id 5KRT _atom_sites.fract_transf_matrix[1][1] 0.013876 _atom_sites.fract_transf_matrix[1][2] 0.008011 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6W6 A 1 301 1 6W6 J10 . C 2 6W6 A 1 302 2 6W6 J10 . D 3 HOH A 1 401 81 HOH HOH . D 3 HOH A 2 402 75 HOH HOH . D 3 HOH A 3 403 114 HOH HOH . D 3 HOH A 4 404 83 HOH HOH . D 3 HOH A 5 405 58 HOH HOH . D 3 HOH A 6 406 27 HOH HOH . D 3 HOH A 7 407 20 HOH HOH . D 3 HOH A 8 408 42 HOH HOH . D 3 HOH A 9 409 111 HOH HOH . D 3 HOH A 10 410 36 HOH HOH . D 3 HOH A 11 411 59 HOH HOH . D 3 HOH A 12 412 86 HOH HOH . D 3 HOH A 13 413 3 HOH HOH . D 3 HOH A 14 414 108 HOH HOH . D 3 HOH A 15 415 48 HOH HOH . D 3 HOH A 16 416 52 HOH HOH . D 3 HOH A 17 417 77 HOH HOH . D 3 HOH A 18 418 16 HOH HOH . D 3 HOH A 19 419 67 HOH HOH . D 3 HOH A 20 420 102 HOH HOH . D 3 HOH A 21 421 11 HOH HOH . D 3 HOH A 22 422 28 HOH HOH . D 3 HOH A 23 423 7 HOH HOH . D 3 HOH A 24 424 8 HOH HOH . D 3 HOH A 25 425 31 HOH HOH . D 3 HOH A 26 426 80 HOH HOH . D 3 HOH A 27 427 4 HOH HOH . D 3 HOH A 28 428 15 HOH HOH . D 3 HOH A 29 429 105 HOH HOH . D 3 HOH A 30 430 2 HOH HOH . D 3 HOH A 31 431 26 HOH HOH . D 3 HOH A 32 432 18 HOH HOH . D 3 HOH A 33 433 23 HOH HOH . D 3 HOH A 34 434 46 HOH HOH . D 3 HOH A 35 435 5 HOH HOH . D 3 HOH A 36 436 1 HOH HOH . D 3 HOH A 37 437 29 HOH HOH . D 3 HOH A 38 438 9 HOH HOH . D 3 HOH A 39 439 69 HOH HOH . D 3 HOH A 40 440 17 HOH HOH . D 3 HOH A 41 441 25 HOH HOH . D 3 HOH A 42 442 55 HOH HOH . D 3 HOH A 43 443 13 HOH HOH . D 3 HOH A 44 444 115 HOH HOH . D 3 HOH A 45 445 53 HOH HOH . D 3 HOH A 46 446 62 HOH HOH . D 3 HOH A 47 447 39 HOH HOH . D 3 HOH A 48 448 19 HOH HOH . D 3 HOH A 49 449 94 HOH HOH . D 3 HOH A 50 450 70 HOH HOH . D 3 HOH A 51 451 61 HOH HOH . D 3 HOH A 52 452 56 HOH HOH . D 3 HOH A 53 453 14 HOH HOH . D 3 HOH A 54 454 24 HOH HOH . D 3 HOH A 55 455 6 HOH HOH . D 3 HOH A 56 456 40 HOH HOH . D 3 HOH A 57 457 76 HOH HOH . D 3 HOH A 58 458 45 HOH HOH . D 3 HOH A 59 459 12 HOH HOH . D 3 HOH A 60 460 21 HOH HOH . D 3 HOH A 61 461 112 HOH HOH . D 3 HOH A 62 462 30 HOH HOH . D 3 HOH A 63 463 22 HOH HOH . D 3 HOH A 64 464 34 HOH HOH . D 3 HOH A 65 465 87 HOH HOH . D 3 HOH A 66 466 43 HOH HOH . D 3 HOH A 67 467 10 HOH HOH . D 3 HOH A 68 468 91 HOH HOH . D 3 HOH A 69 469 33 HOH HOH . D 3 HOH A 70 470 66 HOH HOH . D 3 HOH A 71 471 98 HOH HOH . D 3 HOH A 72 472 35 HOH HOH . D 3 HOH A 73 473 38 HOH HOH . D 3 HOH A 74 474 47 HOH HOH . D 3 HOH A 75 475 32 HOH HOH . D 3 HOH A 76 476 50 HOH HOH . D 3 HOH A 77 477 104 HOH HOH . D 3 HOH A 78 478 82 HOH HOH . D 3 HOH A 79 479 85 HOH HOH . D 3 HOH A 80 480 84 HOH HOH . D 3 HOH A 81 481 60 HOH HOH . D 3 HOH A 82 482 103 HOH HOH . D 3 HOH A 83 483 97 HOH HOH . D 3 HOH A 84 484 65 HOH HOH . D 3 HOH A 85 485 64 HOH HOH . D 3 HOH A 86 486 79 HOH HOH . D 3 HOH A 87 487 99 HOH HOH . D 3 HOH A 88 488 106 HOH HOH . D 3 HOH A 89 489 63 HOH HOH . D 3 HOH A 90 490 90 HOH HOH . D 3 HOH A 91 491 44 HOH HOH . D 3 HOH A 92 492 100 HOH HOH . D 3 HOH A 93 493 110 HOH HOH . D 3 HOH A 94 494 109 HOH HOH . D 3 HOH A 95 495 88 HOH HOH . D 3 HOH A 96 496 107 HOH HOH . D 3 HOH A 97 497 72 HOH HOH . D 3 HOH A 98 498 49 HOH HOH . D 3 HOH A 99 499 73 HOH HOH . D 3 HOH A 100 500 57 HOH HOH . D 3 HOH A 101 501 54 HOH HOH . D 3 HOH A 102 502 78 HOH HOH . D 3 HOH A 103 503 41 HOH HOH . D 3 HOH A 104 504 92 HOH HOH . D 3 HOH A 105 505 101 HOH HOH . D 3 HOH A 106 506 93 HOH HOH . D 3 HOH A 107 507 95 HOH HOH . D 3 HOH A 108 508 96 HOH HOH . D 3 HOH A 109 509 89 HOH HOH . D 3 HOH A 110 510 71 HOH HOH . D 3 HOH A 111 511 68 HOH HOH . D 3 HOH A 112 512 51 HOH HOH . D 3 HOH A 113 513 113 HOH HOH . D 3 HOH A 114 514 37 HOH HOH . D 3 HOH A 115 515 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 6W6 . . . B 2 12.797 -41.397 -11.792 1 53.1 ? O01 6W6 301 A 1 HETATM 2 C C02 6W6 . . . B 2 12.685 -41.283 -10.542 1 50.83 ? C02 6W6 301 A 1 HETATM 3 O O03 6W6 . . . B 2 11.563 -41.37 -9.974 1 37.29 ? O03 6W6 301 A 1 HETATM 4 C C04 6W6 . . . B 2 13.917 -41.029 -9.683 1 54.45 ? C04 6W6 301 A 1 HETATM 5 C C05 6W6 . . . B 2 13.844 -40.703 -8.28 1 47.49 ? C05 6W6 301 A 1 HETATM 6 N N06 6W6 . . . B 2 12.599 -40.589 -7.551 1 41.35 ? N06 6W6 301 A 1 HETATM 7 C C07 6W6 . . . B 2 12.053 -41.572 -6.714 1 38.84 ? C07 6W6 301 A 1 HETATM 8 CL CL1 6W6 . . . B 2 12.825 -43.128 -6.397 1 48.61 ? CL1 6W6 301 A 1 HETATM 9 C C09 6W6 . . . B 2 10.849 -41.095 -6.196 1 34.96 ? C09 6W6 301 A 1 HETATM 10 C C10 6W6 . . . B 2 10.633 -39.788 -6.735 1 39.85 ? C10 6W6 301 A 1 HETATM 11 C C11 6W6 . . . B 2 11.714 -39.491 -7.566 1 44.96 ? C11 6W6 301 A 1 HETATM 12 CL CL2 6W6 . . . B 2 11.985 -38.006 -8.499 1 61.21 ? CL2 6W6 301 A 1 HETATM 13 C C13 6W6 . . . B 2 15.277 -40.508 -7.691 1 47.64 ? C13 6W6 301 A 1 HETATM 14 C C14 6W6 . . . B 2 16.269 -40.704 -8.73 1 55.12 ? C14 6W6 301 A 1 HETATM 15 S S15 6W6 . . . B 2 15.518 -41.078 -10.188 1 56.36 ? S15 6W6 301 A 1 HETATM 16 H H091 6W6 . . . B 2 10.285 -41.549 -5.612 1 41.95 ? H091 6W6 301 A 1 HETATM 17 H H101 6W6 . . . B 2 9.905 -39.236 -6.561 1 47.81 ? H101 6W6 301 A 1 HETATM 18 H H131 6W6 . . . B 2 15.465 -40.292 -6.807 1 57.17 ? H131 6W6 301 A 1 HETATM 19 H H141 6W6 . . . B 2 17.189 -40.637 -8.607 1 66.14 ? H141 6W6 301 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #