data_5KSC # _model_server_result.job_id 8ceMv77kek3FwvEQjuC5UA _model_server_result.datetime_utc '2024-11-02 18:15:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ksc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5KSC # _exptl.entry_id 5KSC _exptl.method 'NEUTRON DIFFRACTION' # _entity.details Aztreonam _entity.formula_weight 437.449 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '2-({[(1Z)-1-(2-amino-1,3-thiazol-4-yl)-2-oxo-2-{[(2S,3S)-1-oxo-3-(sulfoamino)butan-2-yl]amino}ethylidene]amino}oxy)-2-methylpropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation 'E169A, R275N, R277N' _entity.pdbx_fragment ? _entity.pdbx_ec 3.5.2.6 # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KSC _cell.length_a 73.296 _cell.length_b 73.296 _cell.length_c 99.093 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KSC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 43 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 69 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C20 _struct_conn.ptnr2_label_comp_id AZR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id AZR _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.35 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C13 H19 N5 O8 S2' _chem_comp.formula_weight 437.449 _chem_comp.id AZR _chem_comp.mon_nstd_flag . _chem_comp.name '2-({[(1Z)-1-(2-amino-1,3-thiazol-4-yl)-2-oxo-2-{[(2S,3S)-1-oxo-3-(sulfoamino)butan-2-yl]amino}ethylidene]amino}oxy)-2-methylpropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'AZTREONAM, open form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C18 AZR sing 70 n n S8 C26 AZR sing 71 n y O10 C21 AZR doub 72 n n O11 N14 AZR sing 73 n n O11 C23 AZR sing 74 n n N12 C18 AZR sing 75 n n N12 S17 AZR sing 76 n n N15 C26 AZR doub 77 n y S17 O33 AZR sing 78 n n C19 N13 AZR sing 79 n n C19 C18 AZR sing 80 n n C19 C20 AZR sing 81 n n C20 O9 AZR doub 82 n n C21 N13 AZR sing 83 n n C21 C22 AZR sing 84 n n C22 N14 AZR doub 85 z n C22 C24 AZR sing 86 n n C23 C29 AZR sing 87 n n C23 C28 AZR sing 88 n n C24 N15 AZR sing 89 n y C25 S8 AZR sing 90 n y C25 C24 AZR doub 91 n y C26 N16 AZR sing 92 n n C27 C23 AZR sing 93 n n C29 O31 AZR sing 94 n n O30 C29 AZR doub 95 n n O32 S17 AZR doub 96 n n O34 S17 AZR doub 97 n n C7 H7 AZR sing 98 n n C7 H7A AZR sing 99 n n C7 H7B AZR sing 100 n n N12 HN12 AZR sing 101 n n N13 HN13 AZR sing 102 n n N16 HN16 AZR sing 103 n n N16 HN1A AZR sing 104 n n C18 H18 AZR sing 105 n n C19 H19 AZR sing 106 n n C20 H20 AZR sing 107 n n C25 H25 AZR sing 108 n n C27 H27 AZR sing 109 n n C27 H27A AZR sing 110 n n C27 H27B AZR sing 111 n n C28 H28 AZR sing 112 n n C28 H28A AZR sing 113 n n C28 H28B AZR sing 114 n n O31 HO31 AZR sing 115 n n O33 HO33 AZR sing 116 n n # _atom_sites.entry_id 5KSC _atom_sites.fract_transf_matrix[1][1] 0.013643 _atom_sites.fract_transf_matrix[1][2] 0.007877 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AZR A 1 301 298 AZR AZR . C 3 DOD A 1 401 24 DOD DOD . C 3 DOD A 2 402 11 DOD DOD . C 3 DOD A 3 403 21 DOD DOD . C 3 DOD A 4 404 5 DOD DOD . C 3 DOD A 5 405 20 DOD DOD . C 3 DOD A 6 406 1 DOD DOD . C 3 DOD A 7 407 14 DOD DOD . C 3 DOD A 8 408 19 DOD DOD . C 3 DOD A 9 409 29 DOD DOD . C 3 DOD A 10 410 4 DOD DOD . C 3 DOD A 11 411 8 DOD DOD . C 3 DOD A 12 412 10 DOD DOD . C 3 DOD A 13 413 18 DOD DOD . C 3 DOD A 14 414 26 DOD DOD . C 3 DOD A 15 415 9 DOD DOD . C 3 DOD A 16 416 13 DOD DOD . C 3 DOD A 17 417 3 DOD DOD . C 3 DOD A 18 418 23 DOD DOD . C 3 DOD A 19 419 30 DOD DOD . C 3 DOD A 20 420 31 DOD DOD . C 3 DOD A 21 421 22 DOD DOD . C 3 DOD A 22 422 27 DOD DOD . C 3 DOD A 23 423 25 DOD DOD . C 3 DOD A 24 424 7 DOD DOD . C 3 DOD A 25 425 2 DOD DOD . C 3 DOD A 26 426 15 DOD DOD . C 3 DOD A 27 427 16 DOD DOD . C 3 DOD A 28 428 12 DOD DOD . C 3 DOD A 29 429 28 DOD DOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 AZR . . . B 2 41.186 -18.318 5.203 0.6 32.49 ? C7 AZR 301 A 1 HETATM 2 S S8 AZR . . . B 2 49.617 -19.51 6.393 0.6 30.15 ? S8 AZR 301 A 1 HETATM 3 O O9 AZR . . . B 2 42.802 -21.684 7.845 0.6 29.48 ? O9 AZR 301 A 1 HETATM 4 O O10 AZR . . . B 2 44.381 -17.849 5.418 0.6 32.31 ? O10 AZR 301 A 1 HETATM 5 O O11 AZR . . . B 2 44.881 -19.988 2.96 0.6 32.81 ? O11 AZR 301 A 1 HETATM 6 N N12 AZR . . . B 2 40.547 -20.475 6.032 0.6 30.6 ? N12 AZR 301 A 1 HETATM 7 N N13 AZR . . . B 2 43.946 -19.987 6.097 0.6 29.65 ? N13 AZR 301 A 1 HETATM 8 N N14 AZR . . . B 2 46.072 -19.866 3.621 0.6 31.43 ? N14 AZR 301 A 1 HETATM 9 N N15 AZR . . . B 2 47.626 -18.206 6.749 0.6 31.76 ? N15 AZR 301 A 1 HETATM 10 N N16 AZR . . . B 2 49.825 -17.803 8.18 0.6 36.35 ? N16 AZR 301 A 1 HETATM 11 S S17 AZR . . . B 2 40.071 -21.815 5.21 0.6 29.12 ? S17 AZR 301 A 1 HETATM 12 C C18 AZR . . . B 2 41.652 -19.709 5.578 0.6 29.42 ? C18 AZR 301 A 1 HETATM 13 C C19 AZR . . . B 2 42.7 -19.62 6.668 0.6 29.5 ? C19 AZR 301 A 1 HETATM 14 C C20 AZR . . . B 2 42.346 -20.556 7.803 0.6 30.61 ? C20 AZR 301 A 1 HETATM 15 C C21 AZR . . . B 2 44.751 -19.006 5.464 0.6 31.68 ? C21 AZR 301 A 1 HETATM 16 C C22 AZR . . . B 2 46.071 -19.4 4.838 0.6 30.43 ? C22 AZR 301 A 1 HETATM 17 C C23 AZR . . . B 2 45.015 -19.773 1.574 0.6 34.77 ? C23 AZR 301 A 1 HETATM 18 C C24 AZR . . . B 2 47.366 -19.244 5.602 0.6 32.85 ? C24 AZR 301 A 1 HETATM 19 C C25 AZR . . . B 2 48.571 -20.015 5.404 0.6 32.45 ? C25 AZR 301 A 1 HETATM 20 C C26 AZR . . . B 2 48.965 -18.373 7.209 0.6 31.88 ? C26 AZR 301 A 1 HETATM 21 C C27 AZR . . . B 2 43.633 -19.772 0.959 0.6 34.44 ? C27 AZR 301 A 1 HETATM 22 C C28 AZR . . . B 2 45.668 -18.434 1.288 0.6 33.68 ? C28 AZR 301 A 1 HETATM 23 C C29 AZR . . . B 2 45.82 -20.894 0.95 0.6 34.14 ? C29 AZR 301 A 1 HETATM 24 O O30 AZR . . . B 2 46.097 -20.861 -0.279 0.6 34.89 ? O30 AZR 301 A 1 HETATM 25 O O31 AZR . . . B 2 46.208 -21.865 1.651 0.6 35.52 ? O31 AZR 301 A 1 HETATM 26 O O32 AZR . . . B 2 41.267 -22.617 4.755 0.6 29.88 ? O32 AZR 301 A 1 HETATM 27 O O33 AZR . . . B 2 39.134 -22.656 6.04 0.6 30.32 ? O33 AZR 301 A 1 HETATM 28 O O34 AZR . . . B 2 39.182 -21.455 4.045 0.6 29.69 ? O34 AZR 301 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #