data_5KSH # _model_server_result.job_id 7LKt-eQy4E9MpbVotJl7fA _model_server_result.datetime_utc '2024-10-19 13:25:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ksh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5KSH # _exptl.entry_id 5KSH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KSH _cell.length_a 57.6 _cell.length_b 137.2 _cell.length_c 229.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KSH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,R 1 1 B,I,J,K,L,M,N,O,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 423 A GLU 464 1_555 A N SEP 424 A SEP 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 A C SEP 424 A SEP 465 1_555 A N THR 425 A THR 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 B C GLU 423 B GLU 464 1_555 B N SEP 424 B SEP 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale4 B C SEP 424 B SEP 465 1_555 B N THR 425 B THR 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5KSH _atom_sites.fract_transf_matrix[1][1] 0.017361 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004352 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 601 2 GOL GOL . D 3 SO4 A 1 602 3 SO4 SO4 . E 3 SO4 A 1 603 4 SO4 SO4 . F 3 SO4 A 1 604 7 SO4 SO4 . G 3 SO4 A 1 605 9 SO4 SO4 . H 3 SO4 A 1 606 12 SO4 SO4 . I 2 GOL B 1 601 1 GOL GOL . J 2 GOL B 1 602 3 GOL GOL . K 3 SO4 B 1 603 1 SO4 SO4 . L 3 SO4 B 1 604 2 SO4 SO4 . M 3 SO4 B 1 605 5 SO4 SO4 . N 3 SO4 B 1 606 6 SO4 SO4 . O 3 SO4 B 1 607 8 SO4 SO4 . P 3 SO4 B 1 608 10 SO4 SO4 . Q 3 SO4 B 1 609 11 SO4 SO4 . R 4 HOH A 1 701 1 HOH HOH . R 4 HOH A 2 702 30 HOH HOH . R 4 HOH A 3 703 6 HOH HOH . R 4 HOH A 4 704 2 HOH HOH . R 4 HOH A 5 705 25 HOH HOH . R 4 HOH A 6 706 15 HOH HOH . R 4 HOH A 7 707 14 HOH HOH . R 4 HOH A 8 708 4 HOH HOH . R 4 HOH A 9 709 39 HOH HOH . R 4 HOH A 10 710 7 HOH HOH . R 4 HOH A 11 711 3 HOH HOH . R 4 HOH A 12 712 27 HOH HOH . R 4 HOH A 13 713 23 HOH HOH . R 4 HOH A 14 714 26 HOH HOH . R 4 HOH A 15 715 24 HOH HOH . R 4 HOH A 16 716 10 HOH HOH . R 4 HOH A 17 717 12 HOH HOH . R 4 HOH A 18 718 37 HOH HOH . R 4 HOH A 19 719 28 HOH HOH . R 4 HOH A 20 720 9 HOH HOH . R 4 HOH A 21 721 38 HOH HOH . R 4 HOH A 22 722 16 HOH HOH . S 4 HOH B 1 701 32 HOH HOH . S 4 HOH B 2 702 34 HOH HOH . S 4 HOH B 3 703 5 HOH HOH . S 4 HOH B 4 704 22 HOH HOH . S 4 HOH B 5 705 35 HOH HOH . S 4 HOH B 6 706 20 HOH HOH . S 4 HOH B 7 707 17 HOH HOH . S 4 HOH B 8 708 8 HOH HOH . S 4 HOH B 9 709 33 HOH HOH . S 4 HOH B 10 710 36 HOH HOH . S 4 HOH B 11 711 11 HOH HOH . S 4 HOH B 12 712 19 HOH HOH . S 4 HOH B 13 713 18 HOH HOH . S 4 HOH B 14 714 31 HOH HOH . S 4 HOH B 15 715 29 HOH HOH . S 4 HOH B 16 716 13 HOH HOH . S 4 HOH B 17 717 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 58.191 58.525 32.334 1 51.35 ? C1 GOL 601 A 1 HETATM 2 O O1 GOL . . . C 2 58.036 57.145 32.015 1 51.23 ? O1 GOL 601 A 1 HETATM 3 C C2 GOL . . . C 2 58.752 58.687 33.742 1 50.57 ? C2 GOL 601 A 1 HETATM 4 O O2 GOL . . . C 2 57.946 57.98 34.693 1 49.85 ? O2 GOL 601 A 1 HETATM 5 C C3 GOL . . . C 2 58.732 60.175 34.064 1 51.86 ? C3 GOL 601 A 1 HETATM 6 O O3 GOL . . . C 2 59.208 60.347 35.39 1 50.74 ? O3 GOL 601 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #