data_5KST # _model_server_result.job_id BlZEHbUYZje1b2P8Tj3uWA _model_server_result.datetime_utc '2025-04-10 18:51:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kst # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 5KST # _exptl.entry_id 5KST _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.74 _cell.angle_gamma 90 _cell.entry_id 5KST _cell.length_a 157.001 _cell.length_b 78.209 _cell.length_c 82.158 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KST _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 I N N ? 3 M N N ? 3 O N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 8 A ASP 8 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc2 A OD1 ASP 9 A ASP 9 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc3 A OG SER 40 A SER 40 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc4 A OD1 ASN 92 A ASN 92 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc5 E MN MN . A MN 501 1_555 G O2 PO4 . A PO4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc6 B OD1 ASP 8 B ASP 8 1_555 J MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc7 B OD1 ASP 9 B ASP 9 1_555 J MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc8 B OG SER 40 B SER 40 1_555 J MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc9 B OD1 ASN 92 B ASN 92 1_555 J MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc10 J MN MN . B MN 302 1_555 K O3 PO4 . B PO4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc11 C OD1 ASP 8 C ASP 8 1_555 L MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc12 C OD1 ASP 9 C ASP 9 1_555 L MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc13 C OG SER 40 C SER 40 1_555 L MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc14 C OD1 ASN 92 C ASN 92 1_555 L MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc15 L MN MN . C MN 501 1_555 N O2 PO4 . C PO4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc16 D OD1 ASP 8 D ASP 8 1_555 P MN MN . D MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc17 D OD1 ASP 9 D ASP 9 1_555 P MN MN . D MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc18 D OG SER 40 D SER 40 1_555 P MN MN . D MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc19 D OD1 ASN 92 D ASN 92 1_555 P MN MN . D MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc20 P MN MN . D MN 602 1_555 R O3 PO4 . D PO4 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KST _atom_sites.fract_transf_matrix[1][1] 0.006369 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000753 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MN A 1 501 501 MN MN . F 3 IOD A 1 502 601 IOD IOD . G 4 PO4 A 1 503 701 PO4 PO4 . H 3 IOD A 1 504 602 IOD IOD . I 3 IOD B 1 301 602 IOD IOD . J 2 MN B 1 302 501 MN MN . K 4 PO4 B 1 303 701 PO4 PO4 . L 2 MN C 1 501 501 MN MN . M 3 IOD C 1 502 602 IOD IOD . N 4 PO4 C 1 503 701 PO4 PO4 . O 3 IOD D 1 601 601 IOD IOD . P 2 MN D 1 602 501 MN MN . Q 3 IOD D 1 603 602 IOD IOD . R 4 PO4 D 1 604 701 PO4 PO4 . S 5 HOH A 1 601 47 HOH HOH . S 5 HOH A 2 602 31 HOH HOH . S 5 HOH A 3 603 157 HOH HOH . S 5 HOH A 4 604 35 HOH HOH . S 5 HOH A 5 605 135 HOH HOH . S 5 HOH A 6 606 194 HOH HOH . S 5 HOH A 7 607 154 HOH HOH . S 5 HOH A 8 608 17 HOH HOH . S 5 HOH A 9 609 148 HOH HOH . S 5 HOH A 10 610 182 HOH HOH . S 5 HOH A 11 611 3 HOH HOH . S 5 HOH A 12 612 37 HOH HOH . S 5 HOH A 13 613 119 HOH HOH . S 5 HOH A 14 614 75 HOH HOH . S 5 HOH A 15 615 16 HOH HOH . S 5 HOH A 16 616 15 HOH HOH . S 5 HOH A 17 617 50 HOH HOH . S 5 HOH A 18 618 129 HOH HOH . S 5 HOH A 19 619 173 HOH HOH . S 5 HOH A 20 620 9 HOH HOH . S 5 HOH A 21 621 185 HOH HOH . S 5 HOH A 22 622 172 HOH HOH . S 5 HOH A 23 623 165 HOH HOH . S 5 HOH A 24 624 141 HOH HOH . S 5 HOH A 25 625 144 HOH HOH . S 5 HOH A 26 626 136 HOH HOH . S 5 HOH A 27 627 74 HOH HOH . S 5 HOH A 28 628 19 HOH HOH . S 5 HOH A 29 629 155 HOH HOH . S 5 HOH A 30 630 143 HOH HOH . S 5 HOH A 31 631 43 HOH HOH . S 5 HOH A 32 632 195 HOH HOH . S 5 HOH A 33 633 20 HOH HOH . S 5 HOH A 34 634 61 HOH HOH . S 5 HOH A 35 635 27 HOH HOH . S 5 HOH A 36 636 162 HOH HOH . S 5 HOH A 37 637 193 HOH HOH . S 5 HOH A 38 638 117 HOH HOH . S 5 HOH A 39 639 65 HOH HOH . S 5 HOH A 40 640 174 HOH HOH . S 5 HOH A 41 641 26 HOH HOH . S 5 HOH A 42 642 40 HOH HOH . S 5 HOH A 43 643 160 HOH HOH . S 5 HOH A 44 644 1 HOH HOH . S 5 HOH A 45 645 132 HOH HOH . S 5 HOH A 46 646 82 HOH HOH . S 5 HOH A 47 647 116 HOH HOH . S 5 HOH A 48 648 168 HOH HOH . S 5 HOH A 49 649 137 HOH HOH . S 5 HOH A 50 650 120 HOH HOH . T 5 HOH B 1 401 153 HOH HOH . T 5 HOH B 2 402 97 HOH HOH . T 5 HOH B 3 403 59 HOH HOH . T 5 HOH B 4 404 28 HOH HOH . T 5 HOH B 5 405 45 HOH HOH . T 5 HOH B 6 406 13 HOH HOH . T 5 HOH B 7 407 34 HOH HOH . T 5 HOH B 8 408 142 HOH HOH . T 5 HOH B 9 409 33 HOH HOH . T 5 HOH B 10 410 41 HOH HOH . T 5 HOH B 11 411 181 HOH HOH . T 5 HOH B 12 412 98 HOH HOH . T 5 HOH B 13 413 5 HOH HOH . T 5 HOH B 14 414 46 HOH HOH . T 5 HOH B 15 415 94 HOH HOH . T 5 HOH B 16 416 52 HOH HOH . T 5 HOH B 17 417 164 HOH HOH . T 5 HOH B 18 418 83 HOH HOH . T 5 HOH B 19 419 111 HOH HOH . T 5 HOH B 20 420 198 HOH HOH . T 5 HOH B 21 421 128 HOH HOH . T 5 HOH B 22 422 55 HOH HOH . T 5 HOH B 23 423 21 HOH HOH . T 5 HOH B 24 424 161 HOH HOH . T 5 HOH B 25 425 7 HOH HOH . T 5 HOH B 26 426 109 HOH HOH . T 5 HOH B 27 427 76 HOH HOH . T 5 HOH B 28 428 134 HOH HOH . T 5 HOH B 29 429 197 HOH HOH . T 5 HOH B 30 430 188 HOH HOH . T 5 HOH B 31 431 49 HOH HOH . T 5 HOH B 32 432 93 HOH HOH . T 5 HOH B 33 433 138 HOH HOH . T 5 HOH B 34 434 64 HOH HOH . T 5 HOH B 35 435 106 HOH HOH . T 5 HOH B 36 436 95 HOH HOH . T 5 HOH B 37 437 57 HOH HOH . T 5 HOH B 38 438 163 HOH HOH . T 5 HOH B 39 439 110 HOH HOH . T 5 HOH B 40 440 48 HOH HOH . T 5 HOH B 41 441 150 HOH HOH . T 5 HOH B 42 442 158 HOH HOH . T 5 HOH B 43 443 10 HOH HOH . T 5 HOH B 44 444 38 HOH HOH . T 5 HOH B 45 445 108 HOH HOH . T 5 HOH B 46 446 87 HOH HOH . T 5 HOH B 47 447 179 HOH HOH . T 5 HOH B 48 448 12 HOH HOH . T 5 HOH B 49 449 170 HOH HOH . T 5 HOH B 50 450 51 HOH HOH . T 5 HOH B 51 451 24 HOH HOH . T 5 HOH B 52 452 101 HOH HOH . T 5 HOH B 53 453 63 HOH HOH . T 5 HOH B 54 454 156 HOH HOH . T 5 HOH B 55 455 103 HOH HOH . T 5 HOH B 56 456 167 HOH HOH . U 5 HOH C 1 601 79 HOH HOH . U 5 HOH C 2 602 102 HOH HOH . U 5 HOH C 3 603 152 HOH HOH . U 5 HOH C 4 604 56 HOH HOH . U 5 HOH C 5 605 131 HOH HOH . U 5 HOH C 6 606 66 HOH HOH . U 5 HOH C 7 607 36 HOH HOH . U 5 HOH C 8 608 42 HOH HOH . U 5 HOH C 9 609 4 HOH HOH . U 5 HOH C 10 610 22 HOH HOH . U 5 HOH C 11 611 25 HOH HOH . U 5 HOH C 12 612 118 HOH HOH . U 5 HOH C 13 613 14 HOH HOH . U 5 HOH C 14 614 29 HOH HOH . U 5 HOH C 15 615 2 HOH HOH . U 5 HOH C 16 616 115 HOH HOH . U 5 HOH C 17 617 30 HOH HOH . U 5 HOH C 18 618 96 HOH HOH . U 5 HOH C 19 619 39 HOH HOH . U 5 HOH C 20 620 67 HOH HOH . U 5 HOH C 21 621 54 HOH HOH . U 5 HOH C 22 622 171 HOH HOH . U 5 HOH C 23 623 190 HOH HOH . U 5 HOH C 24 624 53 HOH HOH . U 5 HOH C 25 625 140 HOH HOH . U 5 HOH C 26 626 105 HOH HOH . U 5 HOH C 27 627 69 HOH HOH . U 5 HOH C 28 628 126 HOH HOH . U 5 HOH C 29 629 125 HOH HOH . U 5 HOH C 30 630 169 HOH HOH . U 5 HOH C 31 631 145 HOH HOH . U 5 HOH C 32 632 127 HOH HOH . U 5 HOH C 33 633 99 HOH HOH . U 5 HOH C 34 634 124 HOH HOH . U 5 HOH C 35 635 91 HOH HOH . U 5 HOH C 36 636 159 HOH HOH . U 5 HOH C 37 637 84 HOH HOH . U 5 HOH C 38 638 196 HOH HOH . U 5 HOH C 39 639 44 HOH HOH . U 5 HOH C 40 640 146 HOH HOH . U 5 HOH C 41 641 68 HOH HOH . U 5 HOH C 42 642 175 HOH HOH . U 5 HOH C 43 643 92 HOH HOH . U 5 HOH C 44 644 100 HOH HOH . U 5 HOH C 45 645 130 HOH HOH . U 5 HOH C 46 646 189 HOH HOH . U 5 HOH C 47 647 186 HOH HOH . U 5 HOH C 48 648 86 HOH HOH . U 5 HOH C 49 649 151 HOH HOH . U 5 HOH C 50 650 90 HOH HOH . U 5 HOH C 51 651 77 HOH HOH . U 5 HOH C 52 652 88 HOH HOH . U 5 HOH C 53 653 60 HOH HOH . U 5 HOH C 54 654 133 HOH HOH . U 5 HOH C 55 655 107 HOH HOH . V 5 HOH D 1 701 178 HOH HOH . V 5 HOH D 2 702 166 HOH HOH . V 5 HOH D 3 703 78 HOH HOH . V 5 HOH D 4 704 114 HOH HOH . V 5 HOH D 5 705 32 HOH HOH . V 5 HOH D 6 706 85 HOH HOH . V 5 HOH D 7 707 73 HOH HOH . V 5 HOH D 8 708 147 HOH HOH . V 5 HOH D 9 709 18 HOH HOH . V 5 HOH D 10 710 81 HOH HOH . V 5 HOH D 11 711 80 HOH HOH . V 5 HOH D 12 712 62 HOH HOH . V 5 HOH D 13 713 89 HOH HOH . V 5 HOH D 14 714 23 HOH HOH . V 5 HOH D 15 715 8 HOH HOH . V 5 HOH D 16 716 180 HOH HOH . V 5 HOH D 17 717 123 HOH HOH . V 5 HOH D 18 718 192 HOH HOH . V 5 HOH D 19 719 183 HOH HOH . V 5 HOH D 20 720 58 HOH HOH . V 5 HOH D 21 721 122 HOH HOH . V 5 HOH D 22 722 112 HOH HOH . V 5 HOH D 23 723 191 HOH HOH . V 5 HOH D 24 724 184 HOH HOH . V 5 HOH D 25 725 177 HOH HOH . V 5 HOH D 26 726 176 HOH HOH . V 5 HOH D 27 727 121 HOH HOH . V 5 HOH D 28 728 71 HOH HOH . V 5 HOH D 29 729 139 HOH HOH . V 5 HOH D 30 730 6 HOH HOH . V 5 HOH D 31 731 113 HOH HOH . V 5 HOH D 32 732 187 HOH HOH . V 5 HOH D 33 733 70 HOH HOH . V 5 HOH D 34 734 11 HOH HOH . V 5 HOH D 35 735 104 HOH HOH . V 5 HOH D 36 736 72 HOH HOH . V 5 HOH D 37 737 149 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x 63.886 _atom_site.Cartn_y 17.023 _atom_site.Cartn_z 23.174 _atom_site.occupancy 0.86 _atom_site.B_iso_or_equiv 165.44 _atom_site.pdbx_formal_charge -1 _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 301 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 1043 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #