data_5KSX
#
_model_server_result.job_id            4XaxPcqQnCXDWmQOsY03Ng 
_model_server_result.datetime_utc      '2024-11-05 23:14:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ksx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5KSX 
#
_exptl.entry_id    5KSX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              468.465 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2~{S})-2-[[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino]-3-phenyl-propanoyl]amino]phosphonic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KSX 
_cell.length_a            110.48 
_cell.length_b            110.48 
_cell.length_c            75.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KSX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 110.48 110.48 37.6 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C22 H21 N4 O4 P S' 
_chem_comp.formula_weight    468.465 
_chem_comp.id                7AM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2~{S})-2-[[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino]-3-phenyl-propanoyl]amino]phosphonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OBD PBC 7AM doub 1 n n 
OBE PBC 7AM sing 2 n n 
PBC NAN 7AM sing 3 n n 
PBC OBF 7AM sing 4 n n 
CD2 CE2 7AM doub 5 n y 
CD2 CG 7AM sing 6 n y 
NAN C 7AM sing 7 n n 
CE2 CZ 7AM sing 8 n y 
CB CG 7AM sing 9 n n 
CB CA 7AM sing 10 n n 
CG CD1 7AM doub 11 n y 
C O 7AM doub 12 n n 
C CA 7AM sing 13 n n 
CZ CE1 7AM doub 14 n y 
CA N 7AM sing 15 n n 
CD1 CE1 7AM sing 16 n y 
N C4 7AM sing 17 n n 
N3 C4 7AM doub 18 n y 
N3 C2 7AM sing 19 n y 
C4 C5 7AM sing 20 n y 
C2 N1 7AM doub 21 n y 
C5 CAC 7AM sing 22 n y 
C5 C6 7AM doub 23 n y 
CAC CAD 7AM doub 24 n y 
CAP CAQ 7AM doub 25 n y 
CAP CAK 7AM sing 26 n y 
C6 N1 7AM sing 27 n y 
C6 SAE 7AM sing 28 n y 
CAQ CAR 7AM sing 29 n y 
CAD CAK 7AM sing 30 n n 
CAD SAE 7AM sing 31 n y 
CAK CAT 7AM doub 32 n y 
CAR CAU 7AM sing 33 n n 
CAR CAS 7AM doub 34 n y 
CAT CAS 7AM sing 35 n y 
CAP H1 7AM sing 36 n n 
CAQ H2 7AM sing 37 n n 
CAU H3 7AM sing 38 n n 
CAU H4 7AM sing 39 n n 
CAU H5 7AM sing 40 n n 
CAS H6 7AM sing 41 n n 
CAT H7 7AM sing 42 n n 
CAC H8 7AM sing 43 n n 
C2 H9 7AM sing 44 n n 
N H10 7AM sing 45 n n 
CA H11 7AM sing 46 n n 
NAN H12 7AM sing 47 n n 
OBF H13 7AM sing 48 n n 
OBE H14 7AM sing 49 n n 
CB H15 7AM sing 50 n n 
CB H16 7AM sing 51 n n 
CD1 H17 7AM sing 52 n n 
CE1 H18 7AM sing 53 n n 
CZ H19 7AM sing 54 n n 
CE2 H20 7AM sing 55 n n 
CD2 H21 7AM sing 56 n n 
#
_atom_sites.entry_id                     5KSX 
_atom_sites.fract_transf_matrix[1][1]    0.009051 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009051 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013298 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 F 1 401 1 PO4 PO4 . 
C 3 7AM F 1 402 1 7AM 7AM . 
D 3 7AM F 1 403 2 7AM 7AM . 
E 4 HOH F 1 501 68 HOH HOH . 
E 4 HOH F 2 502 4 HOH HOH . 
E 4 HOH F 3 503 13 HOH HOH . 
E 4 HOH F 4 504 49 HOH HOH . 
E 4 HOH F 5 505 66 HOH HOH . 
E 4 HOH F 6 506 38 HOH HOH . 
E 4 HOH F 7 507 27 HOH HOH . 
E 4 HOH F 8 508 30 HOH HOH . 
E 4 HOH F 9 509 36 HOH HOH . 
E 4 HOH F 10 510 41 HOH HOH . 
E 4 HOH F 11 511 57 HOH HOH . 
E 4 HOH F 12 512 37 HOH HOH . 
E 4 HOH F 13 513 17 HOH HOH . 
E 4 HOH F 14 514 10 HOH HOH . 
E 4 HOH F 15 515 73 HOH HOH . 
E 4 HOH F 16 516 14 HOH HOH . 
E 4 HOH F 17 517 65 HOH HOH . 
E 4 HOH F 18 518 69 HOH HOH . 
E 4 HOH F 19 519 28 HOH HOH . 
E 4 HOH F 20 520 43 HOH HOH . 
E 4 HOH F 21 521 53 HOH HOH . 
E 4 HOH F 22 522 1 HOH HOH . 
E 4 HOH F 23 523 71 HOH HOH . 
E 4 HOH F 24 524 50 HOH HOH . 
E 4 HOH F 25 525 70 HOH HOH . 
E 4 HOH F 26 526 3 HOH HOH . 
E 4 HOH F 27 527 5 HOH HOH . 
E 4 HOH F 28 528 75 HOH HOH . 
E 4 HOH F 29 529 22 HOH HOH . 
E 4 HOH F 30 530 40 HOH HOH . 
E 4 HOH F 31 531 32 HOH HOH . 
E 4 HOH F 32 532 51 HOH HOH . 
E 4 HOH F 33 533 31 HOH HOH . 
E 4 HOH F 34 534 25 HOH HOH . 
E 4 HOH F 35 535 44 HOH HOH . 
E 4 HOH F 36 536 8 HOH HOH . 
E 4 HOH F 37 537 63 HOH HOH . 
E 4 HOH F 38 538 15 HOH HOH . 
E 4 HOH F 39 539 61 HOH HOH . 
E 4 HOH F 40 540 39 HOH HOH . 
E 4 HOH F 41 541 19 HOH HOH . 
E 4 HOH F 42 542 34 HOH HOH . 
E 4 HOH F 43 543 6 HOH HOH . 
E 4 HOH F 44 544 62 HOH HOH . 
E 4 HOH F 45 545 12 HOH HOH . 
E 4 HOH F 46 546 55 HOH HOH . 
E 4 HOH F 47 547 35 HOH HOH . 
E 4 HOH F 48 548 56 HOH HOH . 
E 4 HOH F 49 549 33 HOH HOH . 
E 4 HOH F 50 550 11 HOH HOH . 
E 4 HOH F 51 551 21 HOH HOH . 
E 4 HOH F 52 552 2 HOH HOH . 
E 4 HOH F 53 553 76 HOH HOH . 
E 4 HOH F 54 554 29 HOH HOH . 
E 4 HOH F 55 555 48 HOH HOH . 
E 4 HOH F 56 556 58 HOH HOH . 
E 4 HOH F 57 557 74 HOH HOH . 
E 4 HOH F 58 558 23 HOH HOH . 
E 4 HOH F 59 559 64 HOH HOH . 
E 4 HOH F 60 560 9 HOH HOH . 
E 4 HOH F 61 561 45 HOH HOH . 
E 4 HOH F 62 562 60 HOH HOH . 
E 4 HOH F 63 563 7 HOH HOH . 
E 4 HOH F 64 564 16 HOH HOH . 
E 4 HOH F 65 565 24 HOH HOH . 
E 4 HOH F 66 566 54 HOH HOH . 
E 4 HOH F 67 567 72 HOH HOH . 
E 4 HOH F 68 568 59 HOH HOH . 
E 4 HOH F 69 569 67 HOH HOH . 
E 4 HOH F 70 570 42 HOH HOH . 
E 4 HOH F 71 571 18 HOH HOH . 
E 4 HOH F 72 572 26 HOH HOH . 
E 4 HOH F 73 573 52 HOH HOH . 
E 4 HOH F 74 574 20 HOH HOH . 
E 4 HOH F 75 575 46 HOH HOH . 
E 4 HOH F 76 576 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAP 7AM . . . C 3 -2.446 68.404 40.448 1 106.19 ? CAP 7AM 402 F 1 
HETATM 2 C CAQ 7AM . . . C 3 -1.266 67.792 40.871 1 101.33 ? CAQ 7AM 402 F 1 
HETATM 3 C CAR 7AM . . . C 3 -1.067 67.497 42.218 1 102.2 ? CAR 7AM 402 F 1 
HETATM 4 C CAU 7AM . . . C 3 0.118 66.891 42.627 1 102.01 ? CAU 7AM 402 F 1 
HETATM 5 C CAS 7AM . . . C 3 -2.065 67.822 43.14 1 108.42 ? CAS 7AM 402 F 1 
HETATM 6 C CAT 7AM . . . C 3 -3.255 68.428 42.725 1 109.35 ? CAT 7AM 402 F 1 
HETATM 7 C CAK 7AM . . . C 3 -3.468 68.751 41.369 1 113.69 ? CAK 7AM 402 F 1 
HETATM 8 C CAD 7AM . . . C 3 -4.646 69.29 40.97 1 112.85 ? CAD 7AM 402 F 1 
HETATM 9 S SAE 7AM . . . C 3 -5.936 69.761 41.933 1 110.04 ? SAE 7AM 402 F 1 
HETATM 10 C CAC 7AM . . . C 3 -5.034 69.445 39.699 1 105.48 ? CAC 7AM 402 F 1 
HETATM 11 C C5 7AM . . . C 3 -6.278 69.949 39.521 1 107 ? C5 7AM 402 F 1 
HETATM 12 C C6 7AM . . . C 3 -6.957 70.19 40.684 1 112.79 ? C6 7AM 402 F 1 
HETATM 13 N N1 7AM . . . C 3 -8.222 70.694 40.705 1 98.24 ? N1 7AM 402 F 1 
HETATM 14 C C2 7AM . . . C 3 -8.867 70.985 39.503 1 93.04 ? C2 7AM 402 F 1 
HETATM 15 N N3 7AM . . . C 3 -8.142 70.736 38.324 1 93.67 ? N3 7AM 402 F 1 
HETATM 16 C C4 7AM . . . C 3 -6.888 70.22 38.354 1 101.04 ? C4 7AM 402 F 1 
HETATM 17 N N 7AM . . . C 3 -6.181 69.983 37.229 1 99.69 ? N 7AM 402 F 1 
HETATM 18 C CA 7AM . . . C 3 -6.818 69.891 35.911 1 102.62 ? CA 7AM 402 F 1 
HETATM 19 C C 7AM . . . C 3 -6.788 68.426 35.389 1 98.03 ? C 7AM 402 F 1 
HETATM 20 O O 7AM . . . C 3 -5.838 67.671 35.641 1 94.54 ? O 7AM 402 F 1 
HETATM 21 N NAN 7AM . . . C 3 -7.896 68.108 34.659 1 93.41 ? NAN 7AM 402 F 1 
HETATM 22 P PBC 7AM . . . C 3 -8.138 66.56 33.982 1 95.28 ? PBC 7AM 402 F 1 
HETATM 23 O OBD 7AM . . . C 3 -6.987 66.266 32.85 1 98.32 ? OBD 7AM 402 F 1 
HETATM 24 O OBF 7AM . . . C 3 -7.953 65.471 35.211 1 99.07 ? OBF 7AM 402 F 1 
HETATM 25 O OBE 7AM . . . C 3 -9.461 66.27 33.326 1 92.14 ? OBE 7AM 402 F 1 
HETATM 26 C CB 7AM . . . C 3 -6.133 70.831 34.931 1 104.66 ? CB 7AM 402 F 1 
HETATM 27 C CG 7AM . . . C 3 -6.636 72.143 35.184 1 101.74 ? CG 7AM 402 F 1 
HETATM 28 C CD1 7AM . . . C 3 -5.96 73.001 36.071 1 96.72 ? CD1 7AM 402 F 1 
HETATM 29 C CE1 7AM . . . C 3 -6.433 74.284 36.327 1 91.65 ? CE1 7AM 402 F 1 
HETATM 30 C CZ 7AM . . . C 3 -7.596 74.735 35.705 1 90.78 ? CZ 7AM 402 F 1 
HETATM 31 C CE2 7AM . . . C 3 -8.279 73.893 34.821 1 94.81 ? CE2 7AM 402 F 1 
HETATM 32 C CD2 7AM . . . C 3 -7.804 72.603 34.559 1 97.09 ? CD2 7AM 402 F 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#