data_5KTK # _model_server_result.job_id U3efNPTi-EpXa4QT79vq7Q _model_server_result.datetime_utc '2024-11-29 13:50:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ktk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5KTK # _exptl.entry_id 5KTK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KTK _cell.length_a 46.098 _cell.length_b 84.869 _cell.length_c 134.298 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KTK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 5KTK _atom_sites.fract_transf_matrix[1][1] 0.021693 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011783 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 601 501 NDP NDP . C 3 HOH A 1 701 33 HOH HOH . C 3 HOH A 2 702 35 HOH HOH . C 3 HOH A 3 703 14 HOH HOH . C 3 HOH A 4 704 28 HOH HOH . C 3 HOH A 5 705 15 HOH HOH . C 3 HOH A 6 706 122 HOH HOH . C 3 HOH A 7 707 22 HOH HOH . C 3 HOH A 8 708 32 HOH HOH . C 3 HOH A 9 709 11 HOH HOH . C 3 HOH A 10 710 70 HOH HOH . C 3 HOH A 11 711 73 HOH HOH . C 3 HOH A 12 712 101 HOH HOH . C 3 HOH A 13 713 52 HOH HOH . C 3 HOH A 14 714 38 HOH HOH . C 3 HOH A 15 715 75 HOH HOH . C 3 HOH A 16 716 31 HOH HOH . C 3 HOH A 17 717 76 HOH HOH . C 3 HOH A 18 718 35 HOH HOH . C 3 HOH A 19 719 7 HOH HOH . C 3 HOH A 20 720 23 HOH HOH . C 3 HOH A 21 721 23 HOH HOH . C 3 HOH A 22 722 130 HOH HOH . C 3 HOH A 23 723 166 HOH HOH . C 3 HOH A 24 724 157 HOH HOH . C 3 HOH A 25 725 25 HOH HOH . C 3 HOH A 26 726 101 HOH HOH . C 3 HOH A 27 727 18 HOH HOH . C 3 HOH A 28 728 45 HOH HOH . C 3 HOH A 29 729 9 HOH HOH . C 3 HOH A 30 730 4 HOH HOH . C 3 HOH A 31 731 77 HOH HOH . C 3 HOH A 32 732 33 HOH HOH . C 3 HOH A 33 733 96 HOH HOH . C 3 HOH A 34 734 36 HOH HOH . C 3 HOH A 35 735 141 HOH HOH . C 3 HOH A 36 736 236 HOH HOH . C 3 HOH A 37 737 56 HOH HOH . C 3 HOH A 38 738 53 HOH HOH . C 3 HOH A 39 739 76 HOH HOH . C 3 HOH A 40 740 98 HOH HOH . C 3 HOH A 41 741 52 HOH HOH . C 3 HOH A 42 742 6 HOH HOH . C 3 HOH A 43 743 2 HOH HOH . C 3 HOH A 44 744 10 HOH HOH . C 3 HOH A 45 745 112 HOH HOH . C 3 HOH A 46 746 62 HOH HOH . C 3 HOH A 47 747 133 HOH HOH . C 3 HOH A 48 748 62 HOH HOH . C 3 HOH A 49 749 86 HOH HOH . C 3 HOH A 50 750 50 HOH HOH . C 3 HOH A 51 751 44 HOH HOH . C 3 HOH A 52 752 16 HOH HOH . C 3 HOH A 53 753 8 HOH HOH . C 3 HOH A 54 754 46 HOH HOH . C 3 HOH A 55 755 93 HOH HOH . C 3 HOH A 56 756 32 HOH HOH . C 3 HOH A 57 757 210 HOH HOH . C 3 HOH A 58 758 76 HOH HOH . C 3 HOH A 59 759 72 HOH HOH . C 3 HOH A 60 760 93 HOH HOH . C 3 HOH A 61 761 120 HOH HOH . C 3 HOH A 62 762 5 HOH HOH . C 3 HOH A 63 763 146 HOH HOH . C 3 HOH A 64 764 15 HOH HOH . C 3 HOH A 65 765 27 HOH HOH . C 3 HOH A 66 766 74 HOH HOH . C 3 HOH A 67 767 239 HOH HOH . C 3 HOH A 68 768 14 HOH HOH . C 3 HOH A 69 769 195 HOH HOH . C 3 HOH A 70 770 56 HOH HOH . C 3 HOH A 71 771 227 HOH HOH . C 3 HOH A 72 772 131 HOH HOH . C 3 HOH A 73 773 50 HOH HOH . C 3 HOH A 74 774 4 HOH HOH . C 3 HOH A 75 775 123 HOH HOH . C 3 HOH A 76 776 198 HOH HOH . C 3 HOH A 77 777 106 HOH HOH . C 3 HOH A 78 778 109 HOH HOH . C 3 HOH A 79 779 23 HOH HOH . C 3 HOH A 80 780 104 HOH HOH . C 3 HOH A 81 781 16 HOH HOH . C 3 HOH A 82 782 8 HOH HOH . C 3 HOH A 83 783 221 HOH HOH . C 3 HOH A 84 784 95 HOH HOH . C 3 HOH A 85 785 47 HOH HOH . C 3 HOH A 86 786 94 HOH HOH . C 3 HOH A 87 787 68 HOH HOH . C 3 HOH A 88 788 39 HOH HOH . C 3 HOH A 89 789 126 HOH HOH . C 3 HOH A 90 790 37 HOH HOH . C 3 HOH A 91 791 190 HOH HOH . C 3 HOH A 92 792 56 HOH HOH . C 3 HOH A 93 793 172 HOH HOH . C 3 HOH A 94 794 261 HOH HOH . C 3 HOH A 95 795 63 HOH HOH . C 3 HOH A 96 796 109 HOH HOH . C 3 HOH A 97 797 167 HOH HOH . C 3 HOH A 98 798 28 HOH HOH . C 3 HOH A 99 799 12 HOH HOH . C 3 HOH A 100 800 38 HOH HOH . C 3 HOH A 101 801 48 HOH HOH . C 3 HOH A 102 802 43 HOH HOH . C 3 HOH A 103 803 7 HOH HOH . C 3 HOH A 104 804 95 HOH HOH . C 3 HOH A 105 805 105 HOH HOH . C 3 HOH A 106 806 4 HOH HOH . C 3 HOH A 107 807 8 HOH HOH . C 3 HOH A 108 808 14 HOH HOH . C 3 HOH A 109 809 7 HOH HOH . C 3 HOH A 110 810 33 HOH HOH . C 3 HOH A 111 811 93 HOH HOH . C 3 HOH A 112 812 45 HOH HOH . C 3 HOH A 113 813 59 HOH HOH . C 3 HOH A 114 814 112 HOH HOH . C 3 HOH A 115 815 258 HOH HOH . C 3 HOH A 116 816 119 HOH HOH . C 3 HOH A 117 817 107 HOH HOH . C 3 HOH A 118 818 16 HOH HOH . C 3 HOH A 119 819 30 HOH HOH . C 3 HOH A 120 820 84 HOH HOH . C 3 HOH A 121 821 99 HOH HOH . C 3 HOH A 122 822 74 HOH HOH . C 3 HOH A 123 823 41 HOH HOH . C 3 HOH A 124 824 10 HOH HOH . C 3 HOH A 125 825 113 HOH HOH . C 3 HOH A 126 826 128 HOH HOH . C 3 HOH A 127 827 26 HOH HOH . C 3 HOH A 128 828 4 HOH HOH . C 3 HOH A 129 829 186 HOH HOH . C 3 HOH A 130 830 88 HOH HOH . C 3 HOH A 131 831 12 HOH HOH . C 3 HOH A 132 832 199 HOH HOH . C 3 HOH A 133 833 18 HOH HOH . C 3 HOH A 134 834 92 HOH HOH . C 3 HOH A 135 835 158 HOH HOH . C 3 HOH A 136 836 48 HOH HOH . C 3 HOH A 137 837 257 HOH HOH . C 3 HOH A 138 838 312 HOH HOH . C 3 HOH A 139 839 266 HOH HOH . C 3 HOH A 140 840 6 HOH HOH . C 3 HOH A 141 841 146 HOH HOH . C 3 HOH A 142 842 172 HOH HOH . C 3 HOH A 143 843 296 HOH HOH . C 3 HOH A 144 844 292 HOH HOH . C 3 HOH A 145 845 9 HOH HOH . C 3 HOH A 146 846 253 HOH HOH . C 3 HOH A 147 847 94 HOH HOH . C 3 HOH A 148 848 243 HOH HOH . C 3 HOH A 149 849 251 HOH HOH . C 3 HOH A 150 850 64 HOH HOH . C 3 HOH A 151 851 292 HOH HOH . C 3 HOH A 152 852 298 HOH HOH . C 3 HOH A 153 853 173 HOH HOH . C 3 HOH A 154 854 246 HOH HOH . C 3 HOH A 155 855 248 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 5.775 47.264 94.635 1 33.18 ? PA NDP 601 A 1 HETATM 2 O O1A NDP . . . B 2 5.105 47.526 93.32 1 33.99 ? O1A NDP 601 A 1 HETATM 3 O O2A NDP . . . B 2 6.012 45.854 95.108 1 38.85 ? O2A NDP 601 A 1 HETATM 4 O O5B NDP . . . B 2 4.921 48.056 95.727 1 33.47 ? O5B NDP 601 A 1 HETATM 5 C C5B NDP . . . B 2 4.492 49.374 95.428 1 33.93 ? C5B NDP 601 A 1 HETATM 6 C C4B NDP . . . B 2 3.858 49.92 96.677 1 24.4 ? C4B NDP 601 A 1 HETATM 7 O O4B NDP . . . B 2 3.661 51.321 96.526 1 25.29 ? O4B NDP 601 A 1 HETATM 8 C C3B NDP . . . B 2 2.495 49.327 96.944 1 30.87 ? C3B NDP 601 A 1 HETATM 9 O O3B NDP . . . B 2 2.285 49.348 98.36 1 26.68 ? O3B NDP 601 A 1 HETATM 10 C C2B NDP . . . B 2 1.557 50.271 96.227 1 25.12 ? C2B NDP 601 A 1 HETATM 11 O O2B NDP . . . B 2 0.23 50.319 96.755 1 28.13 ? O2B NDP 601 A 1 HETATM 12 C C1B NDP . . . B 2 2.264 51.586 96.479 1 26.78 ? C1B NDP 601 A 1 HETATM 13 N N9A NDP . . . B 2 2.026 52.605 95.444 1 32.76 ? N9A NDP 601 A 1 HETATM 14 C C8A NDP . . . B 2 2.292 52.502 94.127 1 33.24 ? C8A NDP 601 A 1 HETATM 15 N N7A NDP . . . B 2 1.966 53.657 93.495 1 27.41 ? N7A NDP 601 A 1 HETATM 16 C C5A NDP . . . B 2 1.486 54.509 94.424 1 27.76 ? C5A NDP 601 A 1 HETATM 17 C C6A NDP . . . B 2 0.961 55.888 94.451 1 34.69 ? C6A NDP 601 A 1 HETATM 18 N N6A NDP . . . B 2 0.869 56.621 93.317 1 32.75 ? N6A NDP 601 A 1 HETATM 19 N N1A NDP . . . B 2 0.571 56.402 95.642 1 30.41 ? N1A NDP 601 A 1 HETATM 20 C C2A NDP . . . B 2 0.648 55.701 96.792 1 32.71 ? C2A NDP 601 A 1 HETATM 21 N N3A NDP . . . B 2 1.108 54.437 96.843 1 26.25 ? N3A NDP 601 A 1 HETATM 22 C C4A NDP . . . B 2 1.54 53.808 95.716 1 29.61 ? C4A NDP 601 A 1 HETATM 23 O O3 NDP . . . B 2 7.117 48.146 94.723 1 29.54 ? O3 NDP 601 A 1 HETATM 24 P PN NDP . . . B 2 8.561 47.625 95.144 1 31.8 ? PN NDP 601 A 1 HETATM 25 O O1N NDP . . . B 2 9.198 46.884 94.001 1 33.21 ? O1N NDP 601 A 1 HETATM 26 O O2N NDP . . . B 2 8.429 46.991 96.504 1 38.76 ? O2N NDP 601 A 1 HETATM 27 O O5D NDP . . . B 2 9.375 48.974 95.323 1 30.06 ? O5D NDP 601 A 1 HETATM 28 C C5D NDP . . . B 2 9.078 49.882 96.376 1 29.12 ? C5D NDP 601 A 1 HETATM 29 C C4D NDP . . . B 2 9.855 51.154 96.122 1 28.6 ? C4D NDP 601 A 1 HETATM 30 O O4D NDP . . . B 2 11.231 50.848 95.927 1 30.86 ? O4D NDP 601 A 1 HETATM 31 C C3D NDP . . . B 2 9.376 51.868 94.859 1 28.56 ? C3D NDP 601 A 1 HETATM 32 O O3D NDP . . . B 2 9.302 53.27 95.127 1 30.4 ? O3D NDP 601 A 1 HETATM 33 C C2D NDP . . . B 2 10.441 51.566 93.823 1 28.87 ? C2D NDP 601 A 1 HETATM 34 O O2D NDP . . . B 2 10.585 52.608 92.849 1 33.31 ? O2D NDP 601 A 1 HETATM 35 C C1D NDP . . . B 2 11.686 51.405 94.689 1 30.62 ? C1D NDP 601 A 1 HETATM 36 N N1N NDP . . . B 2 12.709 50.521 94.114 1 26.21 ? N1N NDP 601 A 1 HETATM 37 C C2N NDP . . . B 2 12.454 49.212 93.956 1 30.87 ? C2N NDP 601 A 1 HETATM 38 C C3N NDP . . . B 2 13.393 48.336 93.415 1 28.97 ? C3N NDP 601 A 1 HETATM 39 C C7N NDP . . . B 2 13.12 46.866 93.23 1 28.08 ? C7N NDP 601 A 1 HETATM 40 O O7N NDP . . . B 2 14.057 46.17 92.863 1 34.02 ? O7N NDP 601 A 1 HETATM 41 N N7N NDP . . . B 2 11.922 46.321 93.441 1 28.36 ? N7N NDP 601 A 1 HETATM 42 C C4N NDP . . . B 2 14.758 48.841 93.003 1 29.58 ? C4N NDP 601 A 1 HETATM 43 C C5N NDP . . . B 2 14.914 50.269 93.226 1 24.94 ? C5N NDP 601 A 1 HETATM 44 C C6N NDP . . . B 2 13.891 51.037 93.771 1 28.75 ? C6N NDP 601 A 1 HETATM 45 P P2B NDP . . . B 2 -0.968 49.469 96.095 1 31.73 ? P2B NDP 601 A 1 HETATM 46 O O1X NDP . . . B 2 -0.923 49.826 94.629 1 36.45 ? O1X NDP 601 A 1 HETATM 47 O O2X NDP . . . B 2 -0.554 48.056 96.389 1 34.73 ? O2X NDP 601 A 1 HETATM 48 O O3X NDP . . . B 2 -2.199 49.973 96.791 1 29.39 ? O3X NDP 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 48 #