data_5KTQ # _model_server_result.job_id mXidvEXM_bn6G6Vbr5dSag _model_server_result.datetime_utc '2025-07-03 14:48:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ktq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 5KTQ # _exptl.entry_id 5KTQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 467.157 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KTQ _cell.length_a 109.4 _cell.length_b 137 _cell.length_c 45.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KTQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H16 N3 O13 P3' _chem_comp.formula_weight 467.157 _chem_comp.id DCP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DCP sing 70 n n N1 C6 DCP sing 71 n n N1 C1' DCP sing 72 n n C2 N3 DCP sing 73 n n C2 O2 DCP doub 74 n n N3 C4 DCP doub 75 n n C4 C5 DCP sing 76 n n C4 N4 DCP sing 77 n n C5 C6 DCP doub 78 n n C5 H5 DCP sing 79 n n C6 H6 DCP sing 80 n n N4 HN41 DCP sing 81 n n N4 HN42 DCP sing 82 n n C1' C2' DCP sing 83 n n C1' O4' DCP sing 84 n n C1' H1' DCP sing 85 n n C2' C3' DCP sing 86 n n C2' "H2'1" DCP sing 87 n n C2' "H2'2" DCP sing 88 n n C3' C4' DCP sing 89 n n C3' O3' DCP sing 90 n n C3' H3' DCP sing 91 n n C4' O4' DCP sing 92 n n C4' C5' DCP sing 93 n n C4' H4' DCP sing 94 n n O3' HO3' DCP sing 95 n n C5' O5' DCP sing 96 n n C5' "H5'1" DCP sing 97 n n C5' "H5'2" DCP sing 98 n n O5' PA DCP sing 99 n n PA O1A DCP doub 100 n n PA O2A DCP sing 101 n n PA O3A DCP sing 102 n n O2A HOA2 DCP sing 103 n n O3A PB DCP sing 104 n n PB O1B DCP doub 105 n n PB O2B DCP sing 106 n n PB O3B DCP sing 107 n n O2B HOB2 DCP sing 108 n n O3B PG DCP sing 109 n n PG O1G DCP doub 110 n n PG O2G DCP sing 111 n n PG O3G DCP sing 112 n n O2G HOG2 DCP sing 113 n n O3G HOG3 DCP sing 114 n n # _atom_sites.entry_id 5KTQ _atom_sites.fract_transf_matrix[1][1] 0.009141 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021834 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id DCP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 901 _pdbx_nonpoly_scheme.auth_seq_num 901 _pdbx_nonpoly_scheme.pdb_mon_id DCP _pdbx_nonpoly_scheme.auth_mon_id CTP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DCP . . . B 2 43.523 27.326 21.115 1 59.27 ? N1 DCP 901 A 1 HETATM 2 C C2 DCP . . . B 2 42.479 27.846 20.303 1 59.7 ? C2 DCP 901 A 1 HETATM 3 N N3 DCP . . . B 2 42.001 27.074 19.283 1 60.03 ? N3 DCP 901 A 1 HETATM 4 C C4 DCP . . . B 2 42.47 25.834 19.073 1 59.62 ? C4 DCP 901 A 1 HETATM 5 C C5 DCP . . . B 2 43.548 25.304 19.872 1 59.33 ? C5 DCP 901 A 1 HETATM 6 C C6 DCP . . . B 2 44.025 26.079 20.873 1 58.62 ? C6 DCP 901 A 1 HETATM 7 O O2 DCP . . . B 2 41.977 28.958 20.467 1 59.16 ? O2 DCP 901 A 1 HETATM 8 N N4 DCP . . . B 2 41.939 25.08 18.103 1 58.6 ? N4 DCP 901 A 1 HETATM 9 C C1' DCP . . . B 2 44.06 28.018 22.332 1 58.52 ? C1' DCP 901 A 1 HETATM 10 C C2' DCP . . . B 2 44.187 29.561 22.36 1 59.04 ? C2' DCP 901 A 1 HETATM 11 C C3' DCP . . . B 2 43.939 29.909 23.837 1 58.39 ? C3' DCP 901 A 1 HETATM 12 C C4' DCP . . . B 2 43.988 28.529 24.477 1 57.38 ? C4' DCP 901 A 1 HETATM 13 O O4' DCP . . . B 2 43.365 27.653 23.531 1 58.31 ? O4' DCP 901 A 1 HETATM 14 O O3' DCP . . . B 2 44.927 30.799 24.404 1 56.79 ? O3' DCP 901 A 1 HETATM 15 C C5' DCP . . . B 2 43.336 28.459 25.848 1 56.06 ? C5' DCP 901 A 1 HETATM 16 O O5' DCP . . . B 2 43.148 27.105 26.258 1 56.47 ? O5' DCP 901 A 1 HETATM 17 P PA DCP . . . B 2 44.282 25.926 26.202 1 55.59 ? PA DCP 901 A 1 HETATM 18 O O1A DCP . . . B 2 44.252 25.271 24.864 1 54.99 ? O1A DCP 901 A 1 HETATM 19 O O2A DCP . . . B 2 45.586 26.418 26.729 1 55.51 ? O2A DCP 901 A 1 HETATM 20 O O3A DCP . . . B 2 43.606 24.912 27.241 1 53.87 ? O3A DCP 901 A 1 HETATM 21 P PB DCP . . . B 2 43.713 24.966 28.862 1 52.94 ? PB DCP 901 A 1 HETATM 22 O O1B DCP . . . B 2 44.267 26.271 29.346 1 52.17 ? O1B DCP 901 A 1 HETATM 23 O O2B DCP . . . B 2 42.423 24.441 29.388 1 52.22 ? O2B DCP 901 A 1 HETATM 24 O O3B DCP . . . B 2 44.877 23.842 28.945 1 52.79 ? O3B DCP 901 A 1 HETATM 25 P PG DCP . . . B 2 45.013 22.576 29.922 1 51.82 ? PG DCP 901 A 1 HETATM 26 O O1G DCP . . . B 2 46.222 22.944 30.715 1 50.39 ? O1G DCP 901 A 1 HETATM 27 O O2G DCP . . . B 2 43.755 22.479 30.716 1 51.17 ? O2G DCP 901 A 1 HETATM 28 O O3G DCP . . . B 2 45.215 21.481 28.941 1 49.62 ? O3G DCP 901 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #