data_5KTX # _model_server_result.job_id Qn6RVzKhPbhkapipMtyklg _model_server_result.datetime_utc '2024-11-24 18:50:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ktx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1203}' # _entry.id 5KTX # _exptl.entry_id 5KTX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KTX _cell.length_a 35.255 _cell.length_b 49.32 _cell.length_c 80.253 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KTX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 152 n n C1 C2 EDO sing 153 n n C1 H11 EDO sing 154 n n C1 H12 EDO sing 155 n n O1 HO1 EDO sing 156 n n C2 O2 EDO sing 157 n n C2 H21 EDO sing 158 n n C2 H22 EDO sing 159 n n O2 HO2 EDO sing 160 n n # _atom_sites.entry_id 5KTX _atom_sites.fract_transf_matrix[1][1] 0.028365 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6XH A 1 1201 1 6XH ZZZ . C 3 EDO A 1 1202 1 EDO EDO . D 3 EDO A 1 1203 1 EDO EDO . E 4 DMS A 1 1204 1 DMS DMS . F 5 HOH A 1 1301 219 HOH HOH . F 5 HOH A 2 1302 215 HOH HOH . F 5 HOH A 3 1303 192 HOH HOH . F 5 HOH A 4 1304 186 HOH HOH . F 5 HOH A 5 1305 188 HOH HOH . F 5 HOH A 6 1306 194 HOH HOH . F 5 HOH A 7 1307 221 HOH HOH . F 5 HOH A 8 1308 96 HOH HOH . F 5 HOH A 9 1309 75 HOH HOH . F 5 HOH A 10 1310 222 HOH HOH . F 5 HOH A 11 1311 119 HOH HOH . F 5 HOH A 12 1312 148 HOH HOH . F 5 HOH A 13 1313 156 HOH HOH . F 5 HOH A 14 1314 171 HOH HOH . F 5 HOH A 15 1315 169 HOH HOH . F 5 HOH A 16 1316 133 HOH HOH . F 5 HOH A 17 1317 218 HOH HOH . F 5 HOH A 18 1318 24 HOH HOH . F 5 HOH A 19 1319 220 HOH HOH . F 5 HOH A 20 1320 58 HOH HOH . F 5 HOH A 21 1321 139 HOH HOH . F 5 HOH A 22 1322 203 HOH HOH . F 5 HOH A 23 1323 32 HOH HOH . F 5 HOH A 24 1324 136 HOH HOH . F 5 HOH A 25 1325 189 HOH HOH . F 5 HOH A 26 1326 181 HOH HOH . F 5 HOH A 27 1327 78 HOH HOH . F 5 HOH A 28 1328 100 HOH HOH . F 5 HOH A 29 1329 127 HOH HOH . F 5 HOH A 30 1330 201 HOH HOH . F 5 HOH A 31 1331 69 HOH HOH . F 5 HOH A 32 1332 145 HOH HOH . F 5 HOH A 33 1333 183 HOH HOH . F 5 HOH A 34 1334 23 HOH HOH . F 5 HOH A 35 1335 155 HOH HOH . F 5 HOH A 36 1336 79 HOH HOH . F 5 HOH A 37 1337 35 HOH HOH . F 5 HOH A 38 1338 8 HOH HOH . F 5 HOH A 39 1339 72 HOH HOH . F 5 HOH A 40 1340 11 HOH HOH . F 5 HOH A 41 1341 45 HOH HOH . F 5 HOH A 42 1342 33 HOH HOH . F 5 HOH A 43 1343 26 HOH HOH . F 5 HOH A 44 1344 48 HOH HOH . F 5 HOH A 45 1345 106 HOH HOH . F 5 HOH A 46 1346 108 HOH HOH . F 5 HOH A 47 1347 28 HOH HOH . F 5 HOH A 48 1348 1 HOH HOH . F 5 HOH A 49 1349 18 HOH HOH . F 5 HOH A 50 1350 6 HOH HOH . F 5 HOH A 51 1351 29 HOH HOH . F 5 HOH A 52 1352 82 HOH HOH . F 5 HOH A 53 1353 25 HOH HOH . F 5 HOH A 54 1354 10 HOH HOH . F 5 HOH A 55 1355 7 HOH HOH . F 5 HOH A 56 1356 36 HOH HOH . F 5 HOH A 57 1357 13 HOH HOH . F 5 HOH A 58 1358 65 HOH HOH . F 5 HOH A 59 1359 46 HOH HOH . F 5 HOH A 60 1360 184 HOH HOH . F 5 HOH A 61 1361 12 HOH HOH . F 5 HOH A 62 1362 76 HOH HOH . F 5 HOH A 63 1363 61 HOH HOH . F 5 HOH A 64 1364 34 HOH HOH . F 5 HOH A 65 1365 67 HOH HOH . F 5 HOH A 66 1366 140 HOH HOH . F 5 HOH A 67 1367 43 HOH HOH . F 5 HOH A 68 1368 64 HOH HOH . F 5 HOH A 69 1369 2 HOH HOH . F 5 HOH A 70 1370 27 HOH HOH . F 5 HOH A 71 1371 21 HOH HOH . F 5 HOH A 72 1372 55 HOH HOH . F 5 HOH A 73 1373 20 HOH HOH . F 5 HOH A 74 1374 87 HOH HOH . F 5 HOH A 75 1375 39 HOH HOH . F 5 HOH A 76 1376 15 HOH HOH . F 5 HOH A 77 1377 182 HOH HOH . F 5 HOH A 78 1378 9 HOH HOH . F 5 HOH A 79 1379 180 HOH HOH . F 5 HOH A 80 1380 77 HOH HOH . F 5 HOH A 81 1381 166 HOH HOH . F 5 HOH A 82 1382 66 HOH HOH . F 5 HOH A 83 1383 164 HOH HOH . F 5 HOH A 84 1384 31 HOH HOH . F 5 HOH A 85 1385 205 HOH HOH . F 5 HOH A 86 1386 95 HOH HOH . F 5 HOH A 87 1387 167 HOH HOH . F 5 HOH A 88 1388 16 HOH HOH . F 5 HOH A 89 1389 5 HOH HOH . F 5 HOH A 90 1390 99 HOH HOH . F 5 HOH A 91 1391 216 HOH HOH . F 5 HOH A 92 1392 178 HOH HOH . F 5 HOH A 93 1393 83 HOH HOH . F 5 HOH A 94 1394 14 HOH HOH . F 5 HOH A 95 1395 52 HOH HOH . F 5 HOH A 96 1396 17 HOH HOH . F 5 HOH A 97 1397 132 HOH HOH . F 5 HOH A 98 1398 172 HOH HOH . F 5 HOH A 99 1399 51 HOH HOH . F 5 HOH A 100 1400 44 HOH HOH . F 5 HOH A 101 1401 38 HOH HOH . F 5 HOH A 102 1402 227 HOH HOH . F 5 HOH A 103 1403 177 HOH HOH . F 5 HOH A 104 1404 190 HOH HOH . F 5 HOH A 105 1405 4 HOH HOH . F 5 HOH A 106 1406 85 HOH HOH . F 5 HOH A 107 1407 73 HOH HOH . F 5 HOH A 108 1408 47 HOH HOH . F 5 HOH A 109 1409 187 HOH HOH . F 5 HOH A 110 1410 213 HOH HOH . F 5 HOH A 111 1411 147 HOH HOH . F 5 HOH A 112 1412 19 HOH HOH . F 5 HOH A 113 1413 204 HOH HOH . F 5 HOH A 114 1414 86 HOH HOH . F 5 HOH A 115 1415 71 HOH HOH . F 5 HOH A 116 1416 200 HOH HOH . F 5 HOH A 117 1417 30 HOH HOH . F 5 HOH A 118 1418 3 HOH HOH . F 5 HOH A 119 1419 115 HOH HOH . F 5 HOH A 120 1420 193 HOH HOH . F 5 HOH A 121 1421 226 HOH HOH . F 5 HOH A 122 1422 150 HOH HOH . F 5 HOH A 123 1423 49 HOH HOH . F 5 HOH A 124 1424 228 HOH HOH . F 5 HOH A 125 1425 160 HOH HOH . F 5 HOH A 126 1426 90 HOH HOH . F 5 HOH A 127 1427 135 HOH HOH . F 5 HOH A 128 1428 134 HOH HOH . F 5 HOH A 129 1429 54 HOH HOH . F 5 HOH A 130 1430 62 HOH HOH . F 5 HOH A 131 1431 163 HOH HOH . F 5 HOH A 132 1432 94 HOH HOH . F 5 HOH A 133 1433 141 HOH HOH . F 5 HOH A 134 1434 102 HOH HOH . F 5 HOH A 135 1435 107 HOH HOH . F 5 HOH A 136 1436 157 HOH HOH . F 5 HOH A 137 1437 168 HOH HOH . F 5 HOH A 138 1438 98 HOH HOH . F 5 HOH A 139 1439 165 HOH HOH . F 5 HOH A 140 1440 208 HOH HOH . F 5 HOH A 141 1441 142 HOH HOH . F 5 HOH A 142 1442 70 HOH HOH . F 5 HOH A 143 1443 113 HOH HOH . F 5 HOH A 144 1444 118 HOH HOH . F 5 HOH A 145 1445 126 HOH HOH . F 5 HOH A 146 1446 131 HOH HOH . F 5 HOH A 147 1447 209 HOH HOH . F 5 HOH A 148 1448 60 HOH HOH . F 5 HOH A 149 1449 103 HOH HOH . F 5 HOH A 150 1450 185 HOH HOH . F 5 HOH A 151 1451 161 HOH HOH . F 5 HOH A 152 1452 210 HOH HOH . F 5 HOH A 153 1453 223 HOH HOH . F 5 HOH A 154 1454 202 HOH HOH . F 5 HOH A 155 1455 162 HOH HOH . F 5 HOH A 156 1456 101 HOH HOH . F 5 HOH A 157 1457 195 HOH HOH . F 5 HOH A 158 1458 129 HOH HOH . F 5 HOH A 159 1459 57 HOH HOH . F 5 HOH A 160 1460 88 HOH HOH . F 5 HOH A 161 1461 120 HOH HOH . F 5 HOH A 162 1462 152 HOH HOH . F 5 HOH A 163 1463 50 HOH HOH . F 5 HOH A 164 1464 197 HOH HOH . F 5 HOH A 165 1465 214 HOH HOH . F 5 HOH A 166 1466 211 HOH HOH . F 5 HOH A 167 1467 159 HOH HOH . F 5 HOH A 168 1468 196 HOH HOH . F 5 HOH A 169 1469 91 HOH HOH . F 5 HOH A 170 1470 224 HOH HOH . F 5 HOH A 171 1471 68 HOH HOH . F 5 HOH A 172 1472 144 HOH HOH . F 5 HOH A 173 1473 74 HOH HOH . F 5 HOH A 174 1474 81 HOH HOH . F 5 HOH A 175 1475 191 HOH HOH . F 5 HOH A 176 1476 179 HOH HOH . F 5 HOH A 177 1477 111 HOH HOH . F 5 HOH A 178 1478 149 HOH HOH . F 5 HOH A 179 1479 22 HOH HOH . F 5 HOH A 180 1480 117 HOH HOH . F 5 HOH A 181 1481 198 HOH HOH . F 5 HOH A 182 1482 41 HOH HOH . F 5 HOH A 183 1483 138 HOH HOH . F 5 HOH A 184 1484 112 HOH HOH . F 5 HOH A 185 1485 104 HOH HOH . F 5 HOH A 186 1486 217 HOH HOH . F 5 HOH A 187 1487 153 HOH HOH . F 5 HOH A 188 1488 174 HOH HOH . F 5 HOH A 189 1489 143 HOH HOH . F 5 HOH A 190 1490 175 HOH HOH . F 5 HOH A 191 1491 207 HOH HOH . F 5 HOH A 192 1492 170 HOH HOH . F 5 HOH A 193 1493 93 HOH HOH . F 5 HOH A 194 1494 109 HOH HOH . F 5 HOH A 195 1495 84 HOH HOH . F 5 HOH A 196 1496 56 HOH HOH . F 5 HOH A 197 1497 59 HOH HOH . F 5 HOH A 198 1498 40 HOH HOH . F 5 HOH A 199 1499 124 HOH HOH . F 5 HOH A 200 1500 151 HOH HOH . F 5 HOH A 201 1501 105 HOH HOH . F 5 HOH A 202 1502 154 HOH HOH . F 5 HOH A 203 1503 80 HOH HOH . F 5 HOH A 204 1504 42 HOH HOH . F 5 HOH A 205 1505 212 HOH HOH . F 5 HOH A 206 1506 158 HOH HOH . F 5 HOH A 207 1507 199 HOH HOH . F 5 HOH A 208 1508 146 HOH HOH . F 5 HOH A 209 1509 229 HOH HOH . F 5 HOH A 210 1510 137 HOH HOH . F 5 HOH A 211 1511 130 HOH HOH . F 5 HOH A 212 1512 176 HOH HOH . F 5 HOH A 213 1513 116 HOH HOH . F 5 HOH A 214 1514 53 HOH HOH . F 5 HOH A 215 1515 206 HOH HOH . F 5 HOH A 216 1516 63 HOH HOH . F 5 HOH A 217 1517 89 HOH HOH . F 5 HOH A 218 1518 110 HOH HOH . F 5 HOH A 219 1519 128 HOH HOH . F 5 HOH A 220 1520 37 HOH HOH . F 5 HOH A 221 1521 121 HOH HOH . F 5 HOH A 222 1522 125 HOH HOH . F 5 HOH A 223 1523 225 HOH HOH . F 5 HOH A 224 1524 123 HOH HOH . F 5 HOH A 225 1525 173 HOH HOH . F 5 HOH A 226 1526 92 HOH HOH . F 5 HOH A 227 1527 97 HOH HOH . F 5 HOH A 228 1528 114 HOH HOH . F 5 HOH A 229 1529 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 10.646 -1.633 -23.06 1 19.95 ? C1 EDO 1203 A 1 HETATM 2 O O1 EDO . . . D 3 10.548 -2.997 -22.617 1 14.56 ? O1 EDO 1203 A 1 HETATM 3 C C2 EDO . . . D 3 9.259 -1.004 -23.156 1 22.06 ? C2 EDO 1203 A 1 HETATM 4 O O2 EDO . . . D 3 8.48 -1.682 -24.15 1 21.78 ? O2 EDO 1203 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #