data_5KU3 # _model_server_result.job_id 8ZKB-xJWR0Uopiz3G3jZdA _model_server_result.datetime_utc '2024-11-24 21:53:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ku3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5KU3 # _exptl.entry_id 5KU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KU3 _cell.length_a 46.037 _cell.length_b 53.115 _cell.length_c 106.745 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 152 n n C1 C2 EDO sing 153 n n C1 H11 EDO sing 154 n n C1 H12 EDO sing 155 n n O1 HO1 EDO sing 156 n n C2 O2 EDO sing 157 n n C2 H21 EDO sing 158 n n C2 H22 EDO sing 159 n n O2 HO2 EDO sing 160 n n # _atom_sites.entry_id 5KU3 _atom_sites.fract_transf_matrix[1][1] 0.021722 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009368 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 2 EDO A 1 202 2 EDO EDO . D 2 EDO A 1 203 3 EDO EDO . E 2 EDO A 1 204 4 EDO EDO . F 2 EDO A 1 205 5 EDO EDO . G 2 EDO A 1 206 6 EDO EDO . H 3 DMS A 1 207 7 DMS DMS . I 3 DMS A 1 208 8 DMS DMS . J 4 GOL A 1 209 9 GOL GOL . K 5 PEG A 1 210 10 PEG PEG . L 6 6XH A 1 211 1 6XH DRG . M 7 HOH A 1 301 110 HOH HOH . M 7 HOH A 2 302 54 HOH HOH . M 7 HOH A 3 303 190 HOH HOH . M 7 HOH A 4 304 133 HOH HOH . M 7 HOH A 5 305 161 HOH HOH . M 7 HOH A 6 306 192 HOH HOH . M 7 HOH A 7 307 151 HOH HOH . M 7 HOH A 8 308 180 HOH HOH . M 7 HOH A 9 309 7 HOH HOH . M 7 HOH A 10 310 13 HOH HOH . M 7 HOH A 11 311 126 HOH HOH . M 7 HOH A 12 312 176 HOH HOH . M 7 HOH A 13 313 22 HOH HOH . M 7 HOH A 14 314 168 HOH HOH . M 7 HOH A 15 315 120 HOH HOH . M 7 HOH A 16 316 122 HOH HOH . M 7 HOH A 17 317 49 HOH HOH . M 7 HOH A 18 318 83 HOH HOH . M 7 HOH A 19 319 109 HOH HOH . M 7 HOH A 20 320 23 HOH HOH . M 7 HOH A 21 321 12 HOH HOH . M 7 HOH A 22 322 53 HOH HOH . M 7 HOH A 23 323 59 HOH HOH . M 7 HOH A 24 324 154 HOH HOH . M 7 HOH A 25 325 131 HOH HOH . M 7 HOH A 26 326 9 HOH HOH . M 7 HOH A 27 327 127 HOH HOH . M 7 HOH A 28 328 5 HOH HOH . M 7 HOH A 29 329 31 HOH HOH . M 7 HOH A 30 330 20 HOH HOH . M 7 HOH A 31 331 26 HOH HOH . M 7 HOH A 32 332 94 HOH HOH . M 7 HOH A 33 333 77 HOH HOH . M 7 HOH A 34 334 69 HOH HOH . M 7 HOH A 35 335 172 HOH HOH . M 7 HOH A 36 336 35 HOH HOH . M 7 HOH A 37 337 90 HOH HOH . M 7 HOH A 38 338 129 HOH HOH . M 7 HOH A 39 339 62 HOH HOH . M 7 HOH A 40 340 182 HOH HOH . M 7 HOH A 41 341 125 HOH HOH . M 7 HOH A 42 342 71 HOH HOH . M 7 HOH A 43 343 106 HOH HOH . M 7 HOH A 44 344 63 HOH HOH . M 7 HOH A 45 345 19 HOH HOH . M 7 HOH A 46 346 197 HOH HOH . M 7 HOH A 47 347 145 HOH HOH . M 7 HOH A 48 348 38 HOH HOH . M 7 HOH A 49 349 37 HOH HOH . M 7 HOH A 50 350 25 HOH HOH . M 7 HOH A 51 351 124 HOH HOH . M 7 HOH A 52 352 58 HOH HOH . M 7 HOH A 53 353 34 HOH HOH . M 7 HOH A 54 354 103 HOH HOH . M 7 HOH A 55 355 92 HOH HOH . M 7 HOH A 56 356 44 HOH HOH . M 7 HOH A 57 357 8 HOH HOH . M 7 HOH A 58 358 60 HOH HOH . M 7 HOH A 59 359 15 HOH HOH . M 7 HOH A 60 360 2 HOH HOH . M 7 HOH A 61 361 95 HOH HOH . M 7 HOH A 62 362 18 HOH HOH . M 7 HOH A 63 363 10 HOH HOH . M 7 HOH A 64 364 91 HOH HOH . M 7 HOH A 65 365 155 HOH HOH . M 7 HOH A 66 366 48 HOH HOH . M 7 HOH A 67 367 191 HOH HOH . M 7 HOH A 68 368 67 HOH HOH . M 7 HOH A 69 369 123 HOH HOH . M 7 HOH A 70 370 45 HOH HOH . M 7 HOH A 71 371 55 HOH HOH . M 7 HOH A 72 372 64 HOH HOH . M 7 HOH A 73 373 177 HOH HOH . M 7 HOH A 74 374 88 HOH HOH . M 7 HOH A 75 375 24 HOH HOH . M 7 HOH A 76 376 4 HOH HOH . M 7 HOH A 77 377 85 HOH HOH . M 7 HOH A 78 378 52 HOH HOH . M 7 HOH A 79 379 43 HOH HOH . M 7 HOH A 80 380 104 HOH HOH . M 7 HOH A 81 381 27 HOH HOH . M 7 HOH A 82 382 121 HOH HOH . M 7 HOH A 83 383 39 HOH HOH . M 7 HOH A 84 384 47 HOH HOH . M 7 HOH A 85 385 99 HOH HOH . M 7 HOH A 86 386 96 HOH HOH . M 7 HOH A 87 387 6 HOH HOH . M 7 HOH A 88 388 105 HOH HOH . M 7 HOH A 89 389 130 HOH HOH . M 7 HOH A 90 390 72 HOH HOH . M 7 HOH A 91 391 200 HOH HOH . M 7 HOH A 92 392 80 HOH HOH . M 7 HOH A 93 393 66 HOH HOH . M 7 HOH A 94 394 87 HOH HOH . M 7 HOH A 95 395 28 HOH HOH . M 7 HOH A 96 396 42 HOH HOH . M 7 HOH A 97 397 21 HOH HOH . M 7 HOH A 98 398 65 HOH HOH . M 7 HOH A 99 399 81 HOH HOH . M 7 HOH A 100 400 14 HOH HOH . M 7 HOH A 101 401 112 HOH HOH . M 7 HOH A 102 402 56 HOH HOH . M 7 HOH A 103 403 113 HOH HOH . M 7 HOH A 104 404 30 HOH HOH . M 7 HOH A 105 405 148 HOH HOH . M 7 HOH A 106 406 174 HOH HOH . M 7 HOH A 107 407 147 HOH HOH . M 7 HOH A 108 408 50 HOH HOH . M 7 HOH A 109 409 79 HOH HOH . M 7 HOH A 110 410 17 HOH HOH . M 7 HOH A 111 411 115 HOH HOH . M 7 HOH A 112 412 116 HOH HOH . M 7 HOH A 113 413 36 HOH HOH . M 7 HOH A 114 414 33 HOH HOH . M 7 HOH A 115 415 134 HOH HOH . M 7 HOH A 116 416 73 HOH HOH . M 7 HOH A 117 417 51 HOH HOH . M 7 HOH A 118 418 11 HOH HOH . M 7 HOH A 119 419 3 HOH HOH . M 7 HOH A 120 420 185 HOH HOH . M 7 HOH A 121 421 179 HOH HOH . M 7 HOH A 122 422 68 HOH HOH . M 7 HOH A 123 423 189 HOH HOH . M 7 HOH A 124 424 29 HOH HOH . M 7 HOH A 125 425 32 HOH HOH . M 7 HOH A 126 426 16 HOH HOH . M 7 HOH A 127 427 111 HOH HOH . M 7 HOH A 128 428 98 HOH HOH . M 7 HOH A 129 429 40 HOH HOH . M 7 HOH A 130 430 152 HOH HOH . M 7 HOH A 131 431 150 HOH HOH . M 7 HOH A 132 432 149 HOH HOH . M 7 HOH A 133 433 201 HOH HOH . M 7 HOH A 134 434 46 HOH HOH . M 7 HOH A 135 435 76 HOH HOH . M 7 HOH A 136 436 175 HOH HOH . M 7 HOH A 137 437 89 HOH HOH . M 7 HOH A 138 438 93 HOH HOH . M 7 HOH A 139 439 167 HOH HOH . M 7 HOH A 140 440 132 HOH HOH . M 7 HOH A 141 441 97 HOH HOH . M 7 HOH A 142 442 107 HOH HOH . M 7 HOH A 143 443 142 HOH HOH . M 7 HOH A 144 444 41 HOH HOH . M 7 HOH A 145 445 143 HOH HOH . M 7 HOH A 146 446 102 HOH HOH . M 7 HOH A 147 447 178 HOH HOH . M 7 HOH A 148 448 169 HOH HOH . M 7 HOH A 149 449 118 HOH HOH . M 7 HOH A 150 450 138 HOH HOH . M 7 HOH A 151 451 164 HOH HOH . M 7 HOH A 152 452 193 HOH HOH . M 7 HOH A 153 453 188 HOH HOH . M 7 HOH A 154 454 183 HOH HOH . M 7 HOH A 155 455 74 HOH HOH . M 7 HOH A 156 456 156 HOH HOH . M 7 HOH A 157 457 119 HOH HOH . M 7 HOH A 158 458 117 HOH HOH . M 7 HOH A 159 459 163 HOH HOH . M 7 HOH A 160 460 100 HOH HOH . M 7 HOH A 161 461 114 HOH HOH . M 7 HOH A 162 462 101 HOH HOH . M 7 HOH A 163 463 160 HOH HOH . M 7 HOH A 164 464 137 HOH HOH . M 7 HOH A 165 465 86 HOH HOH . M 7 HOH A 166 466 158 HOH HOH . M 7 HOH A 167 467 181 HOH HOH . M 7 HOH A 168 468 139 HOH HOH . M 7 HOH A 169 469 70 HOH HOH . M 7 HOH A 170 470 84 HOH HOH . M 7 HOH A 171 471 144 HOH HOH . M 7 HOH A 172 472 61 HOH HOH . M 7 HOH A 173 473 75 HOH HOH . M 7 HOH A 174 474 153 HOH HOH . M 7 HOH A 175 475 162 HOH HOH . M 7 HOH A 176 476 108 HOH HOH . M 7 HOH A 177 477 1 HOH HOH . M 7 HOH A 178 478 186 HOH HOH . M 7 HOH A 179 479 141 HOH HOH . M 7 HOH A 180 480 136 HOH HOH . M 7 HOH A 181 481 82 HOH HOH . M 7 HOH A 182 482 198 HOH HOH . M 7 HOH A 183 483 57 HOH HOH . M 7 HOH A 184 484 195 HOH HOH . M 7 HOH A 185 485 170 HOH HOH . M 7 HOH A 186 486 128 HOH HOH . M 7 HOH A 187 487 187 HOH HOH . M 7 HOH A 188 488 196 HOH HOH . M 7 HOH A 189 489 173 HOH HOH . M 7 HOH A 190 490 78 HOH HOH . M 7 HOH A 191 491 135 HOH HOH . M 7 HOH A 192 492 165 HOH HOH . M 7 HOH A 193 493 159 HOH HOH . M 7 HOH A 194 494 166 HOH HOH . M 7 HOH A 195 495 157 HOH HOH . M 7 HOH A 196 496 171 HOH HOH . M 7 HOH A 197 497 146 HOH HOH . M 7 HOH A 198 498 140 HOH HOH . M 7 HOH A 199 499 184 HOH HOH . M 7 HOH A 200 500 194 HOH HOH . M 7 HOH A 201 501 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 4.018 -5.199 -10.857 0.8 26.82 ? C1 EDO 204 A 1 HETATM 2 O O1 EDO . . . E 2 4.276 -5.106 -12.256 0.8 31.18 ? O1 EDO 204 A 1 HETATM 3 C C2 EDO . . . E 2 3.298 -6.506 -10.574 0.8 24.74 ? C2 EDO 204 A 1 HETATM 4 O O2 EDO . . . E 2 1.942 -6.28 -10.171 0.8 32.95 ? O2 EDO 204 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 374 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #