data_5KU5 # _model_server_result.job_id iQIcVt-n0sXSRLopw_el-g _model_server_result.datetime_utc '2024-10-28 02:31:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ku5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":202}' # _entry.id 5KU5 # _exptl.entry_id 5KU5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 107.868 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SILVER ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KU5 _cell.length_a 35.225 _cell.length_b 96.289 _cell.length_c 203.664 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KU5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,N,O 1 1 C,D,I,J,K,L,M,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 5 A HIS 42 1_555 H AG AG . B AG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc2 A O SER 47 A SER 84 1_555 E AG AG . A AG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc3 A SD MET 96 A MET 133 1_555 E AG AG . A AG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc4 A SD MET 98 A MET 135 1_555 E AG AG . A AG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc5 A ND1 HIS 108 A HIS 145 1_555 E AG AG . A AG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc6 A ND1 HIS 139 A HIS 176 1_555 F AG AG . A AG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc7 F AG AG . A AG 202 1_555 B NE2 HIS 5 B HIS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc8 B SD MET 96 B MET 133 1_555 G AG AG . B AG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc9 B SD MET 98 B MET 135 1_555 G AG AG . B AG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc10 B ND1 HIS 108 B HIS 145 1_555 G AG AG . B AG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc11 B ND1 HIS 139 B HIS 176 1_555 H AG AG . B AG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc12 C NE2 HIS 5 C HIS 42 1_555 K AG AG . D AG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc13 C O SER 47 C SER 84 1_555 I AG AG . C AG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc14 C SD MET 96 C MET 133 1_555 I AG AG . C AG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc15 C SD MET 98 C MET 135 1_555 I AG AG . C AG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc16 C ND1 HIS 108 C HIS 145 1_555 I AG AG . C AG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc17 C ND1 HIS 139 C HIS 176 1_555 J AG AG . C AG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc18 J AG AG . C AG 202 1_555 D NE2 HIS 5 D HIS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc19 D SD MET 96 D MET 133 1_555 L AG AG . D AG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc20 D SD MET 98 D MET 135 1_555 L AG AG . D AG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc21 D ND1 HIS 108 D HIS 145 1_555 L AG AG . D AG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc22 D ND1 HIS 139 D HIS 176 1_555 K AG AG . D AG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? # _chem_comp.formula 'Ag 1' _chem_comp.formula_weight 107.868 _chem_comp.id AG _chem_comp.mon_nstd_flag . _chem_comp.name 'SILVER ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KU5 _atom_sites.fract_transf_matrix[1][1] 0.028389 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00491 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 AG A 1 201 1 AG AG . F 2 AG A 1 202 2 AG AG . G 2 AG B 1 201 7 AG AG . H 2 AG B 1 202 8 AG AG . I 2 AG C 1 201 4 AG AG . J 2 AG C 1 202 6 AG AG . K 2 AG D 1 201 3 AG AG . L 2 AG D 1 202 5 AG AG . M 3 ACT D 1 203 1 ACT ACT . N 4 HOH A 1 301 109 HOH HOH . N 4 HOH A 2 302 37 HOH HOH . N 4 HOH A 3 303 180 HOH HOH . N 4 HOH A 4 304 84 HOH HOH . N 4 HOH A 5 305 124 HOH HOH . N 4 HOH A 6 306 117 HOH HOH . N 4 HOH A 7 307 65 HOH HOH . N 4 HOH A 8 308 176 HOH HOH . N 4 HOH A 9 309 27 HOH HOH . N 4 HOH A 10 310 188 HOH HOH . N 4 HOH A 11 311 20 HOH HOH . N 4 HOH A 12 312 174 HOH HOH . N 4 HOH A 13 313 125 HOH HOH . N 4 HOH A 14 314 96 HOH HOH . N 4 HOH A 15 315 56 HOH HOH . N 4 HOH A 16 316 206 HOH HOH . N 4 HOH A 17 317 14 HOH HOH . N 4 HOH A 18 318 62 HOH HOH . N 4 HOH A 19 319 153 HOH HOH . N 4 HOH A 20 320 39 HOH HOH . N 4 HOH A 21 321 67 HOH HOH . N 4 HOH A 22 322 13 HOH HOH . N 4 HOH A 23 323 43 HOH HOH . N 4 HOH A 24 324 57 HOH HOH . N 4 HOH A 25 325 30 HOH HOH . N 4 HOH A 26 326 60 HOH HOH . N 4 HOH A 27 327 12 HOH HOH . N 4 HOH A 28 328 6 HOH HOH . N 4 HOH A 29 329 104 HOH HOH . N 4 HOH A 30 330 202 HOH HOH . N 4 HOH A 31 331 193 HOH HOH . N 4 HOH A 32 332 36 HOH HOH . N 4 HOH A 33 333 54 HOH HOH . N 4 HOH A 34 334 26 HOH HOH . N 4 HOH A 35 335 199 HOH HOH . N 4 HOH A 36 336 142 HOH HOH . N 4 HOH A 37 337 7 HOH HOH . N 4 HOH A 38 338 88 HOH HOH . N 4 HOH A 39 339 52 HOH HOH . N 4 HOH A 40 340 192 HOH HOH . N 4 HOH A 41 341 201 HOH HOH . N 4 HOH A 42 342 161 HOH HOH . N 4 HOH A 43 343 74 HOH HOH . N 4 HOH A 44 344 94 HOH HOH . N 4 HOH A 45 345 16 HOH HOH . N 4 HOH A 46 346 158 HOH HOH . N 4 HOH A 47 347 200 HOH HOH . N 4 HOH A 48 348 165 HOH HOH . N 4 HOH A 49 349 145 HOH HOH . N 4 HOH A 50 350 115 HOH HOH . N 4 HOH A 51 351 116 HOH HOH . N 4 HOH A 52 352 123 HOH HOH . N 4 HOH A 53 353 179 HOH HOH . N 4 HOH A 54 354 61 HOH HOH . N 4 HOH A 55 355 204 HOH HOH . N 4 HOH A 56 356 107 HOH HOH . N 4 HOH A 57 357 19 HOH HOH . N 4 HOH A 58 358 150 HOH HOH . N 4 HOH A 59 359 136 HOH HOH . N 4 HOH A 60 360 45 HOH HOH . N 4 HOH A 61 361 122 HOH HOH . N 4 HOH A 62 362 81 HOH HOH . N 4 HOH A 63 363 154 HOH HOH . N 4 HOH A 64 364 66 HOH HOH . N 4 HOH A 65 365 135 HOH HOH . O 4 HOH B 1 301 70 HOH HOH . O 4 HOH B 2 302 64 HOH HOH . O 4 HOH B 3 303 186 HOH HOH . O 4 HOH B 4 304 144 HOH HOH . O 4 HOH B 5 305 112 HOH HOH . O 4 HOH B 6 306 172 HOH HOH . O 4 HOH B 7 307 167 HOH HOH . O 4 HOH B 8 308 184 HOH HOH . O 4 HOH B 9 309 8 HOH HOH . O 4 HOH B 10 310 71 HOH HOH . O 4 HOH B 11 311 82 HOH HOH . O 4 HOH B 12 312 138 HOH HOH . O 4 HOH B 13 313 75 HOH HOH . O 4 HOH B 14 314 25 HOH HOH . O 4 HOH B 15 315 4 HOH HOH . O 4 HOH B 16 316 194 HOH HOH . O 4 HOH B 17 317 148 HOH HOH . O 4 HOH B 18 318 139 HOH HOH . O 4 HOH B 19 319 168 HOH HOH . O 4 HOH B 20 320 44 HOH HOH . O 4 HOH B 21 321 182 HOH HOH . O 4 HOH B 22 322 18 HOH HOH . O 4 HOH B 23 323 205 HOH HOH . O 4 HOH B 24 324 34 HOH HOH . O 4 HOH B 25 325 133 HOH HOH . O 4 HOH B 26 326 32 HOH HOH . O 4 HOH B 27 327 95 HOH HOH . O 4 HOH B 28 328 152 HOH HOH . O 4 HOH B 29 329 9 HOH HOH . O 4 HOH B 30 330 181 HOH HOH . O 4 HOH B 31 331 1 HOH HOH . O 4 HOH B 32 332 38 HOH HOH . O 4 HOH B 33 333 190 HOH HOH . O 4 HOH B 34 334 42 HOH HOH . O 4 HOH B 35 335 166 HOH HOH . O 4 HOH B 36 336 207 HOH HOH . O 4 HOH B 37 337 128 HOH HOH . O 4 HOH B 38 338 178 HOH HOH . O 4 HOH B 39 339 23 HOH HOH . O 4 HOH B 40 340 97 HOH HOH . O 4 HOH B 41 341 149 HOH HOH . O 4 HOH B 42 342 196 HOH HOH . O 4 HOH B 43 343 197 HOH HOH . O 4 HOH B 44 344 76 HOH HOH . O 4 HOH B 45 345 35 HOH HOH . O 4 HOH B 46 346 114 HOH HOH . O 4 HOH B 47 347 159 HOH HOH . O 4 HOH B 48 348 48 HOH HOH . O 4 HOH B 49 349 110 HOH HOH . P 4 HOH C 1 301 21 HOH HOH . P 4 HOH C 2 302 183 HOH HOH . P 4 HOH C 3 303 118 HOH HOH . P 4 HOH C 4 304 28 HOH HOH . P 4 HOH C 5 305 100 HOH HOH . P 4 HOH C 6 306 22 HOH HOH . P 4 HOH C 7 307 90 HOH HOH . P 4 HOH C 8 308 157 HOH HOH . P 4 HOH C 9 309 103 HOH HOH . P 4 HOH C 10 310 102 HOH HOH . P 4 HOH C 11 311 163 HOH HOH . P 4 HOH C 12 312 151 HOH HOH . P 4 HOH C 13 313 134 HOH HOH . P 4 HOH C 14 314 129 HOH HOH . P 4 HOH C 15 315 51 HOH HOH . P 4 HOH C 16 316 131 HOH HOH . P 4 HOH C 17 317 130 HOH HOH . P 4 HOH C 18 318 99 HOH HOH . P 4 HOH C 19 319 49 HOH HOH . P 4 HOH C 20 320 17 HOH HOH . P 4 HOH C 21 321 15 HOH HOH . P 4 HOH C 22 322 72 HOH HOH . P 4 HOH C 23 323 175 HOH HOH . P 4 HOH C 24 324 113 HOH HOH . P 4 HOH C 25 325 86 HOH HOH . P 4 HOH C 26 326 119 HOH HOH . P 4 HOH C 27 327 53 HOH HOH . P 4 HOH C 28 328 91 HOH HOH . P 4 HOH C 29 329 147 HOH HOH . P 4 HOH C 30 330 2 HOH HOH . P 4 HOH C 31 331 63 HOH HOH . P 4 HOH C 32 332 80 HOH HOH . P 4 HOH C 33 333 3 HOH HOH . P 4 HOH C 34 334 120 HOH HOH . P 4 HOH C 35 335 55 HOH HOH . P 4 HOH C 36 336 24 HOH HOH . P 4 HOH C 37 337 29 HOH HOH . P 4 HOH C 38 338 171 HOH HOH . P 4 HOH C 39 339 162 HOH HOH . P 4 HOH C 40 340 59 HOH HOH . P 4 HOH C 41 341 173 HOH HOH . P 4 HOH C 42 342 69 HOH HOH . P 4 HOH C 43 343 41 HOH HOH . P 4 HOH C 44 344 187 HOH HOH . P 4 HOH C 45 345 68 HOH HOH . P 4 HOH C 46 346 191 HOH HOH . P 4 HOH C 47 347 195 HOH HOH . P 4 HOH C 48 348 169 HOH HOH . P 4 HOH C 49 349 121 HOH HOH . P 4 HOH C 50 350 98 HOH HOH . P 4 HOH C 51 351 77 HOH HOH . P 4 HOH C 52 352 108 HOH HOH . P 4 HOH C 53 353 105 HOH HOH . P 4 HOH C 54 354 87 HOH HOH . P 4 HOH C 55 355 85 HOH HOH . P 4 HOH C 56 356 40 HOH HOH . P 4 HOH C 57 357 106 HOH HOH . P 4 HOH C 58 358 58 HOH HOH . P 4 HOH C 59 359 126 HOH HOH . P 4 HOH C 60 360 10 HOH HOH . Q 4 HOH D 1 301 78 HOH HOH . Q 4 HOH D 2 302 160 HOH HOH . Q 4 HOH D 3 303 46 HOH HOH . Q 4 HOH D 4 304 132 HOH HOH . Q 4 HOH D 5 305 89 HOH HOH . Q 4 HOH D 6 306 93 HOH HOH . Q 4 HOH D 7 307 47 HOH HOH . Q 4 HOH D 8 308 50 HOH HOH . Q 4 HOH D 9 309 198 HOH HOH . Q 4 HOH D 10 310 31 HOH HOH . Q 4 HOH D 11 311 137 HOH HOH . Q 4 HOH D 12 312 203 HOH HOH . Q 4 HOH D 13 313 11 HOH HOH . Q 4 HOH D 14 314 33 HOH HOH . Q 4 HOH D 15 315 92 HOH HOH . Q 4 HOH D 16 316 170 HOH HOH . Q 4 HOH D 17 317 143 HOH HOH . Q 4 HOH D 18 318 156 HOH HOH . Q 4 HOH D 19 319 79 HOH HOH . Q 4 HOH D 20 320 164 HOH HOH . Q 4 HOH D 21 321 140 HOH HOH . Q 4 HOH D 22 322 141 HOH HOH . Q 4 HOH D 23 323 5 HOH HOH . Q 4 HOH D 24 324 146 HOH HOH . Q 4 HOH D 25 325 101 HOH HOH . Q 4 HOH D 26 326 177 HOH HOH . Q 4 HOH D 27 327 83 HOH HOH . Q 4 HOH D 28 328 185 HOH HOH . Q 4 HOH D 29 329 111 HOH HOH . Q 4 HOH D 30 330 73 HOH HOH . Q 4 HOH D 31 331 127 HOH HOH . Q 4 HOH D 32 332 155 HOH HOH . Q 4 HOH D 33 333 189 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol AG _atom_site.label_atom_id AG _atom_site.label_comp_id AG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 2 _atom_site.Cartn_x 10.985 _atom_site.Cartn_y 83.39 _atom_site.Cartn_z 128.123 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id AG _atom_site.auth_comp_id AG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #