data_5KU7 # _model_server_result.job_id ek0e02d0uaqrmQdbHknQMQ _model_server_result.datetime_utc '2025-03-09 02:22:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ku7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5KU7 # _exptl.entry_id 5KU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KU7 _cell.length_a 41.855 _cell.length_b 89.117 _cell.length_c 113.858 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 171 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 187 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 171 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 187 _struct_conn.ptnr2_symmetry 2_566 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.024 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 237 n n C1 O1B MLA doub 238 n n C1 C2 MLA sing 239 n n O1A H1A MLA sing 240 n n C2 C3 MLA sing 241 n n C2 HC21 MLA sing 242 n n C2 HC22 MLA sing 243 n n C3 O3A MLA doub 244 n n C3 O3B MLA sing 245 n n O3B H3B MLA sing 246 n n # _atom_sites.entry_id 5KU7 _atom_sites.fract_transf_matrix[1][1] 0.023892 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLA A 1 201 2 MLA MLA . D 2 MLA B 1 201 1 MLA MLA . E 3 HOH A 1 301 6 HOH HOH . E 3 HOH A 2 302 26 HOH HOH . E 3 HOH A 3 303 14 HOH HOH . E 3 HOH A 4 304 8 HOH HOH . E 3 HOH A 5 305 11 HOH HOH . E 3 HOH A 6 306 23 HOH HOH . E 3 HOH A 7 307 19 HOH HOH . E 3 HOH A 8 308 15 HOH HOH . E 3 HOH A 9 309 34 HOH HOH . E 3 HOH A 10 310 20 HOH HOH . E 3 HOH A 11 311 12 HOH HOH . E 3 HOH A 12 312 7 HOH HOH . E 3 HOH A 13 313 30 HOH HOH . E 3 HOH A 14 314 25 HOH HOH . F 3 HOH B 1 301 5 HOH HOH . F 3 HOH B 2 302 1 HOH HOH . F 3 HOH B 3 303 32 HOH HOH . F 3 HOH B 4 304 17 HOH HOH . F 3 HOH B 5 305 16 HOH HOH . F 3 HOH B 6 306 2 HOH HOH . F 3 HOH B 7 307 3 HOH HOH . F 3 HOH B 8 308 4 HOH HOH . F 3 HOH B 9 309 27 HOH HOH . F 3 HOH B 10 310 31 HOH HOH . F 3 HOH B 11 311 29 HOH HOH . F 3 HOH B 12 312 13 HOH HOH . F 3 HOH B 13 313 28 HOH HOH . F 3 HOH B 14 314 18 HOH HOH . F 3 HOH B 15 315 24 HOH HOH . F 3 HOH B 16 316 9 HOH HOH . F 3 HOH B 17 317 10 HOH HOH . F 3 HOH B 18 318 21 HOH HOH . F 3 HOH B 19 319 22 HOH HOH . F 3 HOH B 20 320 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . C 2 45.836 18.323 55.677 1 44.28 ? C1 MLA 201 A 1 HETATM 2 O O1A MLA . . . C 2 46.094 19.213 56.531 1 40.54 ? O1A MLA 201 A 1 HETATM 3 O O1B MLA . . . C 2 44.991 18.534 54.76 1 38.19 ? O1B MLA 201 A 1 HETATM 4 C C2 MLA . . . C 2 46.57 17.004 55.802 1 52.29 ? C2 MLA 201 A 1 HETATM 5 C C3 MLA . . . C 2 46.123 16.394 57.108 1 54.53 ? C3 MLA 201 A 1 HETATM 6 O O3A MLA . . . C 2 44.982 15.877 57.153 1 47.01 ? O3A MLA 201 A 1 HETATM 7 O O3B MLA . . . C 2 46.854 16.42 58.137 1 61.78 ? O3B MLA 201 A 1 HETATM 8 H HC21 MLA . . . C 2 46.334 16.417 55.059 1 62.74 ? HC21 MLA 201 A 1 HETATM 9 H HC22 MLA . . . C 2 47.534 17.156 55.815 1 62.74 ? HC22 MLA 201 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #