data_5KUH
#
_model_server_result.job_id            P32AvgDhGjfvtyFcgf07-g 
_model_server_result.datetime_utc      '2025-01-11 22:10:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kuh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":901}' 
#
_entry.id    5KUH 
#
_exptl.entry_id    5KUH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              346.37 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(3S,4aR,6S,8aR)-6-{[(2S)-2-carboxy-4,4-difluoropyrrolidin-1-yl]methyl}decahydroisoquinoline-3-carboxylic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KUH 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KUH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C16 H24 F2 N2 O4' 
_chem_comp.formula_weight    346.37 
_chem_comp.id                LY5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(3S,4aR,6S,8aR)-6-{[(2S)-2-carboxy-4,4-difluoropyrrolidin-1-yl]methyl}decahydroisoquinoline-3-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     LY466195 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F1 C15 LY5 sing 192 n n 
C15 F2 LY5 sing 193 n n 
C15 C16 LY5 sing 194 n n 
C15 C14 LY5 sing 195 n n 
C16 N2 LY5 sing 196 n n 
C14 C12 LY5 sing 197 n n 
N2 C12 LY5 sing 198 n n 
N2 C11 LY5 sing 199 n n 
C5 C2 LY5 sing 200 n n 
C5 C6 LY5 sing 201 n n 
C5 C4 LY5 sing 202 n n 
C2 C1 LY5 sing 203 n n 
C7 C6 LY5 sing 204 n n 
C7 C11 LY5 sing 205 n n 
C7 C8 LY5 sing 206 n n 
C12 C13 LY5 sing 207 n n 
C9 C4 LY5 sing 208 n n 
C9 C8 LY5 sing 209 n n 
C4 C3 LY5 sing 210 n n 
O1 C10 LY5 doub 211 n n 
O4 C13 LY5 doub 212 n n 
C13 O3 LY5 sing 213 n n 
C1 C10 LY5 sing 214 n n 
C1 N1 LY5 sing 215 n n 
C10 O2 LY5 sing 216 n n 
C3 N1 LY5 sing 217 n n 
C14 H141 LY5 sing 218 n n 
C14 H142 LY5 sing 219 n n 
C12 H12 LY5 sing 220 n n 
O3 HO3 LY5 sing 221 n n 
C16 H161 LY5 sing 222 n n 
C16 H162 LY5 sing 223 n n 
C11 H111 LY5 sing 224 n n 
C11 H112 LY5 sing 225 n n 
C7 H7 LY5 sing 226 n n 
C6 H61 LY5 sing 227 n n 
C6 H62 LY5 sing 228 n n 
C8 H81 LY5 sing 229 n n 
C8 H82 LY5 sing 230 n n 
C9 H91 LY5 sing 231 n n 
C9 H92 LY5 sing 232 n n 
C4 H4 LY5 sing 233 n n 
C5 H5 LY5 sing 234 n n 
C3 H31 LY5 sing 235 n n 
C3 H32 LY5 sing 236 n n 
N1 HN1 LY5 sing 237 n n 
C1 H1 LY5 sing 238 n n 
C2 H21 LY5 sing 239 n n 
C2 H22 LY5 sing 240 n n 
O2 HO2 LY5 sing 241 n n 
#
_atom_sites.entry_id                     5KUH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 LY5 A 1 901 1 LY5 LY5 . 
F 2 LY5 B 1 901 4 LY5 LY5 . 
G 2 LY5 C 1 901 3 LY5 LY5 . 
H 2 LY5 D 1 901 2 LY5 LY5 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F F2 LY5 . . . G 2 178.568 221.764 186.312 1 99 ? F2 LY5 901 C 1 
HETATM 2 C C15 LY5 . . . G 2 178.614 221.04 187.363 1 99 ? C15 LY5 901 C 1 
HETATM 3 F F1 LY5 . . . G 2 178.876 221.945 188.313 1 99 ? F1 LY5 901 C 1 
HETATM 4 C C14 LY5 . . . G 2 179.622 219.92 187.149 1 99 ? C14 LY5 901 C 1 
HETATM 5 C C12 LY5 . . . G 2 178.792 218.71 186.78 1 99 ? C12 LY5 901 C 1 
HETATM 6 C C13 LY5 . . . G 2 179.621 217.457 186.969 1 99 ? C13 LY5 901 C 1 
HETATM 7 O O4 LY5 . . . G 2 179.726 216.637 186.025 1 99 ? O4 LY5 901 C 1 
HETATM 8 O O3 LY5 . . . G 2 180.126 217.267 188.067 1 99 ? O3 LY5 901 C 1 
HETATM 9 C C16 LY5 . . . G 2 177.28 220.32 187.583 1 99 ? C16 LY5 901 C 1 
HETATM 10 N N2 LY5 . . . G 2 177.631 218.879 187.698 1 99 ? N2 LY5 901 C 1 
HETATM 11 C C11 LY5 . . . G 2 176.537 217.942 187.301 1 99 ? C11 LY5 901 C 1 
HETATM 12 C C7 LY5 . . . G 2 175.133 218.172 187.932 1 99 ? C7 LY5 901 C 1 
HETATM 13 C C6 LY5 . . . G 2 175.245 218.092 189.442 1 99 ? C6 LY5 901 C 1 
HETATM 14 C C8 LY5 . . . G 2 174.074 217.256 187.333 1 99 ? C8 LY5 901 C 1 
HETATM 15 C C9 LY5 . . . G 2 172.708 217.394 188.035 1 99 ? C9 LY5 901 C 1 
HETATM 16 C C4 LY5 . . . G 2 173.005 217.268 189.547 1 99 ? C4 LY5 901 C 1 
HETATM 17 C C5 LY5 . . . G 2 173.92 218.297 190.179 1 99 ? C5 LY5 901 C 1 
HETATM 18 C C3 LY5 . . . G 2 173.141 215.829 190.083 1 99 ? C3 LY5 901 C 1 
HETATM 19 N N1 LY5 . . . G 2 173.301 215.782 191.545 1 99 ? N1 LY5 901 C 1 
HETATM 20 C C1 LY5 . . . G 2 174.348 216.659 192.133 1 99 ? C1 LY5 901 C 1 
HETATM 21 C C2 LY5 . . . G 2 174.051 218.112 191.671 1 99 ? C2 LY5 901 C 1 
HETATM 22 C C10 LY5 . . . G 2 174.242 216.553 193.622 1 99 ? C10 LY5 901 C 1 
HETATM 23 O O1 LY5 . . . G 2 173.317 215.932 194.133 1 99 ? O1 LY5 901 C 1 
HETATM 24 O O2 LY5 . . . G 2 175.115 217.117 194.355 1 99 ? O2 LY5 901 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           24 
#