data_5KUM # _model_server_result.job_id I14bcAnXrZbaYWRi_VMwIg _model_server_result.datetime_utc '2025-02-18 17:07:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kum # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":410}' # _entry.id 5KUM # _exptl.entry_id 5KUM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.562 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description DECYL-BETA-D-MALTOPYRANOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KUM _cell.length_a 81.303 _cell.length_b 81.303 _cell.length_c 183.572 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 88 A CYS 123 1_555 A SG CYS 120 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A O THR 108 A THR 143 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc2 A O THR 108 A THR 143 1_555 E K K . A K 404 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc3 A O THR 108 A THR 143 1_555 F K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc4 A OG1 THR 108 A THR 143 1_555 F K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc5 A O THR 108 A THR 143 1_555 F K K . A K 405 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc6 A OG1 THR 108 A THR 143 1_555 F K K . A K 405 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc7 A O ILE 109 A ILE 144 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.102 ? metalc ? metalc8 A O ILE 109 A ILE 144 1_555 D K K . A K 403 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.102 ? metalc ? metalc9 A O ILE 109 A ILE 144 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc10 A O ILE 109 A ILE 144 1_555 E K K . A K 404 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc11 A O GLY 110 A GLY 145 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc12 A O GLY 110 A GLY 145 1_555 C K K . A K 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc13 A O GLY 110 A GLY 145 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc14 A O GLY 110 A GLY 145 1_555 D K K . A K 403 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc15 A O TYR 111 A TYR 146 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? metalc ? metalc16 A O TYR 111 A TYR 146 1_555 C K K . A K 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? # _chem_comp.formula 'C22 H42 O11' _chem_comp.formula_weight 482.562 _chem_comp.id DMU _chem_comp.mon_nstd_flag . _chem_comp.name DECYL-BETA-D-MALTOPYRANOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms DECYLMALTOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C40 C37 DMU sing 83 n n C40 C43 DMU sing 84 n n C37 C34 DMU sing 85 n n C34 C31 DMU sing 86 n n C31 C28 DMU sing 87 n n C28 C25 DMU sing 88 n n C22 C25 DMU sing 89 n n C22 C19 DMU sing 90 n n O61 C57 DMU sing 91 n n O4 C7 DMU sing 92 n n C18 C19 DMU sing 93 n n C18 O16 DMU sing 94 n n O5 C6 DMU sing 95 n n O5 C4 DMU sing 96 n n C57 C4 DMU sing 97 n n C6 O16 DMU sing 98 n n C6 C1 DMU sing 99 n n C7 C5 DMU sing 100 n n C7 C8 DMU sing 101 n n C4 C3 DMU sing 102 n n O1 C10 DMU sing 103 n n O1 C9 DMU sing 104 n n C10 C5 DMU sing 105 n n C10 O7 DMU sing 106 n n C5 O3 DMU sing 107 n n O49 C1 DMU sing 108 n n C8 C9 DMU sing 109 n n C8 O2 DMU sing 110 n n C1 C2 DMU sing 111 n n C11 C9 DMU sing 112 n n C11 O6 DMU sing 113 n n C3 O7 DMU sing 114 n n C3 C2 DMU sing 115 n n C2 O55 DMU sing 116 n n C1 H1 DMU sing 117 n n C2 H2 DMU sing 118 n n C3 H3 DMU sing 119 n n C4 H4 DMU sing 120 n n C6 H5 DMU sing 121 n n C18 H6 DMU sing 122 n n C18 H7 DMU sing 123 n n C19 H8 DMU sing 124 n n C19 H9 DMU sing 125 n n C22 H10 DMU sing 126 n n C22 H11 DMU sing 127 n n C25 H12 DMU sing 128 n n C25 H13 DMU sing 129 n n C28 H14 DMU sing 130 n n C28 H15 DMU sing 131 n n C31 H16 DMU sing 132 n n C31 H17 DMU sing 133 n n C34 H18 DMU sing 134 n n C34 H19 DMU sing 135 n n C37 H20 DMU sing 136 n n C37 H21 DMU sing 137 n n C40 H22 DMU sing 138 n n C40 H23 DMU sing 139 n n C43 H24 DMU sing 140 n n C43 H25 DMU sing 141 n n C43 H26 DMU sing 142 n n O49 H27 DMU sing 143 n n O55 H28 DMU sing 144 n n C57 H29 DMU sing 145 n n C57 H30 DMU sing 146 n n O61 H31 DMU sing 147 n n C5 H32 DMU sing 148 n n C7 H33 DMU sing 149 n n C8 H34 DMU sing 150 n n C9 H35 DMU sing 151 n n C10 H36 DMU sing 152 n n O2 H37 DMU sing 153 n n O3 H38 DMU sing 154 n n O4 H39 DMU sing 155 n n C11 H40 DMU sing 156 n n C11 H41 DMU sing 157 n n O6 H42 DMU sing 158 n n # _atom_sites.entry_id 5KUM _atom_sites.fract_transf_matrix[1][1] 0.0123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PIO A 1 401 400 PIO PIO . C 3 K A 1 402 501 K K . D 3 K A 1 403 502 K K . E 3 K A 1 404 503 K K . F 3 K A 1 405 504 K K . G 3 K A 1 406 505 K K . H 3 K A 1 407 506 K K . I 3 K A 1 408 507 K K . J 3 K A 1 409 508 K K . K 4 DMU A 1 410 601 DMU DMU . L 5 HOH A 1 501 730 HOH HOH . L 5 HOH A 2 502 713 HOH HOH . L 5 HOH A 3 503 721 HOH HOH . L 5 HOH A 4 504 724 HOH HOH . L 5 HOH A 5 505 709 HOH HOH . L 5 HOH A 6 506 735 HOH HOH . L 5 HOH A 7 507 740 HOH HOH . L 5 HOH A 8 508 702 HOH HOH . L 5 HOH A 9 509 731 HOH HOH . L 5 HOH A 10 510 742 HOH HOH . L 5 HOH A 11 511 746 HOH HOH . L 5 HOH A 12 512 708 HOH HOH . L 5 HOH A 13 513 711 HOH HOH . L 5 HOH A 14 514 738 HOH HOH . L 5 HOH A 15 515 743 HOH HOH . L 5 HOH A 16 516 745 HOH HOH . L 5 HOH A 17 517 739 HOH HOH . L 5 HOH A 18 518 723 HOH HOH . L 5 HOH A 19 519 715 HOH HOH . L 5 HOH A 20 520 706 HOH HOH . L 5 HOH A 21 521 737 HOH HOH . L 5 HOH A 22 522 718 HOH HOH . L 5 HOH A 23 523 720 HOH HOH . L 5 HOH A 24 524 701 HOH HOH . L 5 HOH A 25 525 719 HOH HOH . L 5 HOH A 26 526 710 HOH HOH . L 5 HOH A 27 527 703 HOH HOH . L 5 HOH A 28 528 707 HOH HOH . L 5 HOH A 29 529 727 HOH HOH . L 5 HOH A 30 530 733 HOH HOH . L 5 HOH A 31 531 722 HOH HOH . L 5 HOH A 32 532 736 HOH HOH . L 5 HOH A 33 533 734 HOH HOH . L 5 HOH A 34 534 741 HOH HOH . L 5 HOH A 35 535 732 HOH HOH . L 5 HOH A 36 536 714 HOH HOH . L 5 HOH A 37 537 747 HOH HOH . L 5 HOH A 38 538 716 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMU . . . K 4 -26.899 1.813 -5.177 1 128.91 ? C1 DMU 410 A 1 HETATM 2 C C2 DMU . . . K 4 -28.102 2.141 -4.287 1 134.19 ? C2 DMU 410 A 1 HETATM 3 C C3 DMU . . . K 4 -27.761 2.983 -3.055 1 140.27 ? C3 DMU 410 A 1 HETATM 4 C C4 DMU . . . K 4 -26.834 4.133 -3.456 1 140.02 ? C4 DMU 410 A 1 HETATM 5 O O5 DMU . . . K 4 -25.655 3.582 -4.055 1 136.6 ? O5 DMU 410 A 1 HETATM 6 C C6 DMU . . . K 4 -25.897 2.967 -5.326 1 127.65 ? C6 DMU 410 A 1 HETATM 7 O O7 DMU . . . K 4 -28.973 3.493 -2.47 1 146.59 ? O7 DMU 410 A 1 HETATM 8 O O16 DMU . . . K 4 -24.65 2.497 -5.867 1 115.81 ? O16 DMU 410 A 1 HETATM 9 C C18 DMU . . . K 4 -23.974 3.458 -6.687 1 100.91 ? C18 DMU 410 A 1 HETATM 10 O O49 DMU . . . K 4 -27.425 1.45 -6.461 1 122.78 ? O49 DMU 410 A 1 HETATM 11 O O55 DMU . . . K 4 -28.692 0.903 -3.873 1 133.22 ? O55 DMU 410 A 1 HETATM 12 C C57 DMU . . . K 4 -26.456 5.067 -2.295 1 142.1 ? C57 DMU 410 A 1 HETATM 13 O O61 DMU . . . K 4 -26.125 4.368 -1.084 1 141.28 ? O61 DMU 410 A 1 HETATM 14 C C5 DMU . . . K 4 -30.611 2.637 -0.901 1 150.46 ? C5 DMU 410 A 1 HETATM 15 C C7 DMU . . . K 4 -31.668 3.673 -1.274 1 154.74 ? C7 DMU 410 A 1 HETATM 16 C C8 DMU . . . K 4 -31.462 4.97 -0.491 1 157.22 ? C8 DMU 410 A 1 HETATM 17 C C9 DMU . . . K 4 -30.005 5.443 -0.534 1 151.09 ? C9 DMU 410 A 1 HETATM 18 O O1 DMU . . . K 4 -29.069 4.383 -0.267 1 153.35 ? O1 DMU 410 A 1 HETATM 19 C C10 DMU . . . K 4 -29.205 3.204 -1.079 1 150.54 ? C10 DMU 410 A 1 HETATM 20 O O2 DMU . . . K 4 -32.307 6.001 -1.024 1 157.67 ? O2 DMU 410 A 1 HETATM 21 O O3 DMU . . . K 4 -30.766 1.47 -1.71 1 137.28 ? O3 DMU 410 A 1 HETATM 22 O O4 DMU . . . K 4 -32.968 3.141 -0.994 1 153.58 ? O4 DMU 410 A 1 HETATM 23 C C11 DMU . . . K 4 -29.761 6.55 0.485 1 141.37 ? C11 DMU 410 A 1 HETATM 24 O O6 DMU . . . K 4 -30.957 7.298 0.756 1 134.38 ? O6 DMU 410 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #