data_5KUP # _model_server_result.job_id U-JjixcatwC8PhxJAjUk-A _model_server_result.datetime_utc '2025-01-10 08:03:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 5KUP # _exptl.entry_id 5KUP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KUP _cell.length_a 108.373 _cell.length_b 108.373 _cell.length_c 42.453 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 198 n n C1 C2 GOL sing 199 n n C1 H11 GOL sing 200 n n C1 H12 GOL sing 201 n n O1 HO1 GOL sing 202 n n C2 O2 GOL sing 203 n n C2 C3 GOL sing 204 n n C2 H2 GOL sing 205 n n O2 HO2 GOL sing 206 n n C3 O3 GOL sing 207 n n C3 H31 GOL sing 208 n n C3 H32 GOL sing 209 n n O3 HO3 GOL sing 210 n n # _atom_sites.entry_id 5KUP _atom_sites.fract_transf_matrix[1][1] 0.009227 _atom_sites.fract_transf_matrix[1][2] 0.005327 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023555 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 701 1 SO4 SO4 . C 2 SO4 A 1 702 2 SO4 SO4 . D 3 GOL A 1 703 1 GOL GOL . E 3 GOL A 1 704 2 GOL GOL . F 4 PG0 A 1 705 1 PG0 PG0 . G 5 6XL A 1 706 1 6XL DRG . H 6 HOH A 1 801 93 HOH HOH . H 6 HOH A 2 802 134 HOH HOH . H 6 HOH A 3 803 263 HOH HOH . H 6 HOH A 4 804 320 HOH HOH . H 6 HOH A 5 805 46 HOH HOH . H 6 HOH A 6 806 315 HOH HOH . H 6 HOH A 7 807 74 HOH HOH . H 6 HOH A 8 808 179 HOH HOH . H 6 HOH A 9 809 239 HOH HOH . H 6 HOH A 10 810 299 HOH HOH . H 6 HOH A 11 811 276 HOH HOH . H 6 HOH A 12 812 131 HOH HOH . H 6 HOH A 13 813 115 HOH HOH . H 6 HOH A 14 814 119 HOH HOH . H 6 HOH A 15 815 259 HOH HOH . H 6 HOH A 16 816 107 HOH HOH . H 6 HOH A 17 817 217 HOH HOH . H 6 HOH A 18 818 59 HOH HOH . H 6 HOH A 19 819 296 HOH HOH . H 6 HOH A 20 820 167 HOH HOH . H 6 HOH A 21 821 54 HOH HOH . H 6 HOH A 22 822 243 HOH HOH . H 6 HOH A 23 823 80 HOH HOH . H 6 HOH A 24 824 157 HOH HOH . H 6 HOH A 25 825 129 HOH HOH . H 6 HOH A 26 826 60 HOH HOH . H 6 HOH A 27 827 94 HOH HOH . H 6 HOH A 28 828 188 HOH HOH . H 6 HOH A 29 829 180 HOH HOH . H 6 HOH A 30 830 269 HOH HOH . H 6 HOH A 31 831 258 HOH HOH . H 6 HOH A 32 832 97 HOH HOH . H 6 HOH A 33 833 135 HOH HOH . H 6 HOH A 34 834 284 HOH HOH . H 6 HOH A 35 835 136 HOH HOH . H 6 HOH A 36 836 108 HOH HOH . H 6 HOH A 37 837 9 HOH HOH . H 6 HOH A 38 838 237 HOH HOH . H 6 HOH A 39 839 139 HOH HOH . H 6 HOH A 40 840 71 HOH HOH . H 6 HOH A 41 841 87 HOH HOH . H 6 HOH A 42 842 170 HOH HOH . H 6 HOH A 43 843 205 HOH HOH . H 6 HOH A 44 844 204 HOH HOH . H 6 HOH A 45 845 252 HOH HOH . H 6 HOH A 46 846 42 HOH HOH . H 6 HOH A 47 847 19 HOH HOH . H 6 HOH A 48 848 52 HOH HOH . H 6 HOH A 49 849 162 HOH HOH . H 6 HOH A 50 850 98 HOH HOH . H 6 HOH A 51 851 208 HOH HOH . H 6 HOH A 52 852 17 HOH HOH . H 6 HOH A 53 853 221 HOH HOH . H 6 HOH A 54 854 106 HOH HOH . H 6 HOH A 55 855 29 HOH HOH . H 6 HOH A 56 856 241 HOH HOH . H 6 HOH A 57 857 23 HOH HOH . H 6 HOH A 58 858 86 HOH HOH . H 6 HOH A 59 859 174 HOH HOH . H 6 HOH A 60 860 247 HOH HOH . H 6 HOH A 61 861 90 HOH HOH . H 6 HOH A 62 862 175 HOH HOH . H 6 HOH A 63 863 166 HOH HOH . H 6 HOH A 64 864 293 HOH HOH . H 6 HOH A 65 865 25 HOH HOH . H 6 HOH A 66 866 20 HOH HOH . H 6 HOH A 67 867 73 HOH HOH . H 6 HOH A 68 868 8 HOH HOH . H 6 HOH A 69 869 51 HOH HOH . H 6 HOH A 70 870 3 HOH HOH . H 6 HOH A 71 871 118 HOH HOH . H 6 HOH A 72 872 184 HOH HOH . H 6 HOH A 73 873 28 HOH HOH . H 6 HOH A 74 874 227 HOH HOH . H 6 HOH A 75 875 114 HOH HOH . H 6 HOH A 76 876 70 HOH HOH . H 6 HOH A 77 877 105 HOH HOH . H 6 HOH A 78 878 47 HOH HOH . H 6 HOH A 79 879 84 HOH HOH . H 6 HOH A 80 880 13 HOH HOH . H 6 HOH A 81 881 161 HOH HOH . H 6 HOH A 82 882 138 HOH HOH . H 6 HOH A 83 883 95 HOH HOH . H 6 HOH A 84 884 12 HOH HOH . H 6 HOH A 85 885 232 HOH HOH . H 6 HOH A 86 886 1 HOH HOH . H 6 HOH A 87 887 7 HOH HOH . H 6 HOH A 88 888 224 HOH HOH . H 6 HOH A 89 889 103 HOH HOH . H 6 HOH A 90 890 15 HOH HOH . H 6 HOH A 91 891 307 HOH HOH . H 6 HOH A 92 892 261 HOH HOH . H 6 HOH A 93 893 302 HOH HOH . H 6 HOH A 94 894 240 HOH HOH . H 6 HOH A 95 895 325 HOH HOH . H 6 HOH A 96 896 200 HOH HOH . H 6 HOH A 97 897 141 HOH HOH . H 6 HOH A 98 898 31 HOH HOH . H 6 HOH A 99 899 130 HOH HOH . H 6 HOH A 100 900 18 HOH HOH . H 6 HOH A 101 901 214 HOH HOH . H 6 HOH A 102 902 196 HOH HOH . H 6 HOH A 103 903 64 HOH HOH . H 6 HOH A 104 904 155 HOH HOH . H 6 HOH A 105 905 14 HOH HOH . H 6 HOH A 106 906 45 HOH HOH . H 6 HOH A 107 907 186 HOH HOH . H 6 HOH A 108 908 24 HOH HOH . H 6 HOH A 109 909 32 HOH HOH . H 6 HOH A 110 910 68 HOH HOH . H 6 HOH A 111 911 183 HOH HOH . H 6 HOH A 112 912 102 HOH HOH . H 6 HOH A 113 913 149 HOH HOH . H 6 HOH A 114 914 191 HOH HOH . H 6 HOH A 115 915 121 HOH HOH . H 6 HOH A 116 916 37 HOH HOH . H 6 HOH A 117 917 65 HOH HOH . H 6 HOH A 118 918 81 HOH HOH . H 6 HOH A 119 919 50 HOH HOH . H 6 HOH A 120 920 34 HOH HOH . H 6 HOH A 121 921 187 HOH HOH . H 6 HOH A 122 922 324 HOH HOH . H 6 HOH A 123 923 285 HOH HOH . H 6 HOH A 124 924 40 HOH HOH . H 6 HOH A 125 925 62 HOH HOH . H 6 HOH A 126 926 236 HOH HOH . H 6 HOH A 127 927 92 HOH HOH . H 6 HOH A 128 928 181 HOH HOH . H 6 HOH A 129 929 11 HOH HOH . H 6 HOH A 130 930 4 HOH HOH . H 6 HOH A 131 931 21 HOH HOH . H 6 HOH A 132 932 199 HOH HOH . H 6 HOH A 133 933 272 HOH HOH . H 6 HOH A 134 934 75 HOH HOH . H 6 HOH A 135 935 69 HOH HOH . H 6 HOH A 136 936 275 HOH HOH . H 6 HOH A 137 937 2 HOH HOH . H 6 HOH A 138 938 146 HOH HOH . H 6 HOH A 139 939 63 HOH HOH . H 6 HOH A 140 940 33 HOH HOH . H 6 HOH A 141 941 100 HOH HOH . H 6 HOH A 142 942 164 HOH HOH . H 6 HOH A 143 943 126 HOH HOH . H 6 HOH A 144 944 43 HOH HOH . H 6 HOH A 145 945 10 HOH HOH . H 6 HOH A 146 946 53 HOH HOH . H 6 HOH A 147 947 144 HOH HOH . H 6 HOH A 148 948 298 HOH HOH . H 6 HOH A 149 949 327 HOH HOH . H 6 HOH A 150 950 127 HOH HOH . H 6 HOH A 151 951 215 HOH HOH . H 6 HOH A 152 952 177 HOH HOH . H 6 HOH A 153 953 256 HOH HOH . H 6 HOH A 154 954 268 HOH HOH . H 6 HOH A 155 955 38 HOH HOH . H 6 HOH A 156 956 6 HOH HOH . H 6 HOH A 157 957 289 HOH HOH . H 6 HOH A 158 958 67 HOH HOH . H 6 HOH A 159 959 178 HOH HOH . H 6 HOH A 160 960 148 HOH HOH . H 6 HOH A 161 961 192 HOH HOH . H 6 HOH A 162 962 287 HOH HOH . H 6 HOH A 163 963 61 HOH HOH . H 6 HOH A 164 964 209 HOH HOH . H 6 HOH A 165 965 101 HOH HOH . H 6 HOH A 166 966 206 HOH HOH . H 6 HOH A 167 967 145 HOH HOH . H 6 HOH A 168 968 49 HOH HOH . H 6 HOH A 169 969 72 HOH HOH . H 6 HOH A 170 970 212 HOH HOH . H 6 HOH A 171 971 77 HOH HOH . H 6 HOH A 172 972 282 HOH HOH . H 6 HOH A 173 973 124 HOH HOH . H 6 HOH A 174 974 122 HOH HOH . H 6 HOH A 175 975 83 HOH HOH . H 6 HOH A 176 976 39 HOH HOH . H 6 HOH A 177 977 55 HOH HOH . H 6 HOH A 178 978 326 HOH HOH . H 6 HOH A 179 979 41 HOH HOH . H 6 HOH A 180 980 35 HOH HOH . H 6 HOH A 181 981 267 HOH HOH . H 6 HOH A 182 982 223 HOH HOH . H 6 HOH A 183 983 36 HOH HOH . H 6 HOH A 184 984 226 HOH HOH . H 6 HOH A 185 985 219 HOH HOH . H 6 HOH A 186 986 30 HOH HOH . H 6 HOH A 187 987 5 HOH HOH . H 6 HOH A 188 988 265 HOH HOH . H 6 HOH A 189 989 125 HOH HOH . H 6 HOH A 190 990 76 HOH HOH . H 6 HOH A 191 991 330 HOH HOH . H 6 HOH A 192 992 99 HOH HOH . H 6 HOH A 193 993 133 HOH HOH . H 6 HOH A 194 994 250 HOH HOH . H 6 HOH A 195 995 57 HOH HOH . H 6 HOH A 196 996 168 HOH HOH . H 6 HOH A 197 997 128 HOH HOH . H 6 HOH A 198 998 152 HOH HOH . H 6 HOH A 199 999 117 HOH HOH . H 6 HOH A 200 1000 116 HOH HOH . H 6 HOH A 201 1001 88 HOH HOH . H 6 HOH A 202 1002 172 HOH HOH . H 6 HOH A 203 1003 143 HOH HOH . H 6 HOH A 204 1004 321 HOH HOH . H 6 HOH A 205 1005 290 HOH HOH . H 6 HOH A 206 1006 283 HOH HOH . H 6 HOH A 207 1007 158 HOH HOH . H 6 HOH A 208 1008 16 HOH HOH . H 6 HOH A 209 1009 251 HOH HOH . H 6 HOH A 210 1010 222 HOH HOH . H 6 HOH A 211 1011 233 HOH HOH . H 6 HOH A 212 1012 22 HOH HOH . H 6 HOH A 213 1013 48 HOH HOH . H 6 HOH A 214 1014 153 HOH HOH . H 6 HOH A 215 1015 91 HOH HOH . H 6 HOH A 216 1016 246 HOH HOH . H 6 HOH A 217 1017 147 HOH HOH . H 6 HOH A 218 1018 242 HOH HOH . H 6 HOH A 219 1019 235 HOH HOH . H 6 HOH A 220 1020 163 HOH HOH . H 6 HOH A 221 1021 238 HOH HOH . H 6 HOH A 222 1022 271 HOH HOH . H 6 HOH A 223 1023 27 HOH HOH . H 6 HOH A 224 1024 198 HOH HOH . H 6 HOH A 225 1025 264 HOH HOH . H 6 HOH A 226 1026 89 HOH HOH . H 6 HOH A 227 1027 44 HOH HOH . H 6 HOH A 228 1028 254 HOH HOH . H 6 HOH A 229 1029 109 HOH HOH . H 6 HOH A 230 1030 312 HOH HOH . H 6 HOH A 231 1031 270 HOH HOH . H 6 HOH A 232 1032 132 HOH HOH . H 6 HOH A 233 1033 211 HOH HOH . H 6 HOH A 234 1034 210 HOH HOH . H 6 HOH A 235 1035 304 HOH HOH . H 6 HOH A 236 1036 56 HOH HOH . H 6 HOH A 237 1037 165 HOH HOH . H 6 HOH A 238 1038 171 HOH HOH . H 6 HOH A 239 1039 308 HOH HOH . H 6 HOH A 240 1040 248 HOH HOH . H 6 HOH A 241 1041 228 HOH HOH . H 6 HOH A 242 1042 245 HOH HOH . H 6 HOH A 243 1043 278 HOH HOH . H 6 HOH A 244 1044 151 HOH HOH . H 6 HOH A 245 1045 279 HOH HOH . H 6 HOH A 246 1046 277 HOH HOH . H 6 HOH A 247 1047 329 HOH HOH . H 6 HOH A 248 1048 154 HOH HOH . H 6 HOH A 249 1049 234 HOH HOH . H 6 HOH A 250 1050 85 HOH HOH . H 6 HOH A 251 1051 78 HOH HOH . H 6 HOH A 252 1052 262 HOH HOH . H 6 HOH A 253 1053 309 HOH HOH . H 6 HOH A 254 1054 218 HOH HOH . H 6 HOH A 255 1055 176 HOH HOH . H 6 HOH A 256 1056 328 HOH HOH . H 6 HOH A 257 1057 316 HOH HOH . H 6 HOH A 258 1058 314 HOH HOH . H 6 HOH A 259 1059 249 HOH HOH . H 6 HOH A 260 1060 58 HOH HOH . H 6 HOH A 261 1061 113 HOH HOH . H 6 HOH A 262 1062 185 HOH HOH . H 6 HOH A 263 1063 82 HOH HOH . H 6 HOH A 264 1064 230 HOH HOH . H 6 HOH A 265 1065 220 HOH HOH . H 6 HOH A 266 1066 173 HOH HOH . H 6 HOH A 267 1067 292 HOH HOH . H 6 HOH A 268 1068 203 HOH HOH . H 6 HOH A 269 1069 190 HOH HOH . H 6 HOH A 270 1070 156 HOH HOH . H 6 HOH A 271 1071 160 HOH HOH . H 6 HOH A 272 1072 150 HOH HOH . H 6 HOH A 273 1073 137 HOH HOH . H 6 HOH A 274 1074 301 HOH HOH . H 6 HOH A 275 1075 303 HOH HOH . H 6 HOH A 276 1076 159 HOH HOH . H 6 HOH A 277 1077 257 HOH HOH . H 6 HOH A 278 1078 120 HOH HOH . H 6 HOH A 279 1079 142 HOH HOH . H 6 HOH A 280 1080 189 HOH HOH . H 6 HOH A 281 1081 111 HOH HOH . H 6 HOH A 282 1082 140 HOH HOH . H 6 HOH A 283 1083 231 HOH HOH . H 6 HOH A 284 1084 286 HOH HOH . H 6 HOH A 285 1085 195 HOH HOH . H 6 HOH A 286 1086 96 HOH HOH . H 6 HOH A 287 1087 193 HOH HOH . H 6 HOH A 288 1088 323 HOH HOH . H 6 HOH A 289 1089 310 HOH HOH . H 6 HOH A 290 1090 281 HOH HOH . H 6 HOH A 291 1091 201 HOH HOH . H 6 HOH A 292 1092 229 HOH HOH . H 6 HOH A 293 1093 207 HOH HOH . H 6 HOH A 294 1094 182 HOH HOH . H 6 HOH A 295 1095 306 HOH HOH . H 6 HOH A 296 1096 331 HOH HOH . H 6 HOH A 297 1097 225 HOH HOH . H 6 HOH A 298 1098 104 HOH HOH . H 6 HOH A 299 1099 26 HOH HOH . H 6 HOH A 300 1100 202 HOH HOH . H 6 HOH A 301 1101 300 HOH HOH . H 6 HOH A 302 1102 216 HOH HOH . H 6 HOH A 303 1103 66 HOH HOH . H 6 HOH A 304 1104 297 HOH HOH . H 6 HOH A 305 1105 169 HOH HOH . H 6 HOH A 306 1106 255 HOH HOH . H 6 HOH A 307 1107 79 HOH HOH . H 6 HOH A 308 1108 291 HOH HOH . H 6 HOH A 309 1109 280 HOH HOH . H 6 HOH A 310 1110 322 HOH HOH . H 6 HOH A 311 1111 317 HOH HOH . H 6 HOH A 312 1112 123 HOH HOH . H 6 HOH A 313 1113 197 HOH HOH . H 6 HOH A 314 1114 311 HOH HOH . H 6 HOH A 315 1115 112 HOH HOH . H 6 HOH A 316 1116 244 HOH HOH . H 6 HOH A 317 1117 295 HOH HOH . H 6 HOH A 318 1118 318 HOH HOH . H 6 HOH A 319 1119 266 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -45.962 22.858 6.685 1 21.82 ? C1 GOL 704 A 1 HETATM 2 O O1 GOL . . . E 3 -46.161 23.867 7.655 1 28.04 ? O1 GOL 704 A 1 HETATM 3 C C2 GOL . . . E 3 -44.485 22.47 6.634 1 25.51 ? C2 GOL 704 A 1 HETATM 4 O O2 GOL . . . E 3 -43.669 23.188 7.544 1 27.86 ? O2 GOL 704 A 1 HETATM 5 C C3 GOL . . . E 3 -44.277 20.962 6.69 1 27.4 ? C3 GOL 704 A 1 HETATM 6 O O3 GOL . . . E 3 -42.904 20.651 6.691 1 27.78 ? O3 GOL 704 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 452 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #