data_5KVW # _model_server_result.job_id vqOCvWeDEwNCzwnbFkWzbg _model_server_result.datetime_utc '2024-11-15 04:47:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5KVW # _exptl.entry_id 5KVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'L(+)-TARTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KVW _cell.length_a 57.469 _cell.length_b 57.469 _cell.length_c 150.933 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 204 A CYS 204 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 9 A CYS 9 1_555 A SG CYS 204 A CYS 204 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.978 ? disulf ? disulf3 A SG CYS 56 A CYS 56 1_555 A SG CYS 66 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? disulf ? disulf4 A SG CYS 71 A CYS 71 1_555 A SG CYS 77 A CYS 77 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.049 ? disulf ? disulf5 A SG CYS 71 A CYS 71 1_555 A SG CYS 77 A CYS 77 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 A SG CYS 121 A CYS 121 1_555 A SG CYS 193 A CYS 193 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf7 A SG CYS 121 A CYS 121 1_555 A SG CYS 193 A CYS 193 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf8 A SG CYS 126 A CYS 126 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.176 ? disulf ? disulf9 A SG CYS 126 A CYS 126 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.026 ? disulf ? disulf10 A SG CYS 134 A CYS 134 1_555 A SG CYS 145 A CYS 145 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.049 ? disulf ? disulf11 A SG CYS 134 A CYS 134 1_555 A SG CYS 145 A CYS 145 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 A SG CYS 149 A CYS 149 1_555 A SG CYS 158 A CYS 158 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.095 ? disulf ? disulf13 A SG CYS 149 A CYS 149 1_555 A SG CYS 158 A CYS 158 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.053 ? disulf ? disulf14 A SG CYS 159 A CYS 159 1_555 A SG CYS 164 A CYS 164 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf15 A SG CYS 159 A CYS 159 1_555 A SG CYS 164 A CYS 164 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf16 A SG CYS 159 A CYS 159 1_555 A SG CYS 164 A CYS 164 1_555 ? C ? ? ? ? ? ? ? ? ? ? 2.138 ? # _chem_comp.formula 'C4 H6 O6' _chem_comp.formula_weight 150.087 _chem_comp.id TLA _chem_comp.mon_nstd_flag . _chem_comp.name 'L(+)-TARTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 TLA doub 298 n n O11 C1 TLA sing 299 n n O11 H11 TLA sing 300 n n C1 C2 TLA sing 301 n n C2 O2 TLA sing 302 n n C2 C3 TLA sing 303 n n C2 H2 TLA sing 304 n n O2 HA TLA sing 305 n n C3 O3 TLA sing 306 n n C3 C4 TLA sing 307 n n C3 H3 TLA sing 308 n n O3 HB TLA sing 309 n n C4 O4 TLA doub 310 n n C4 O41 TLA sing 311 n n O41 H41 TLA sing 312 n n # _atom_sites.entry_id 5KVW _atom_sites.fract_transf_matrix[1][1] 0.017401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TLA A 1 301 208 TLA TLA . C 3 GOL A 1 302 2 GOL GOL . D 3 GOL A 1 303 3 GOL GOL . E 3 GOL A 1 304 4 GOL GOL . F 4 HOH A 1 401 344 HOH HOH . F 4 HOH A 2 402 329 HOH HOH . F 4 HOH A 3 403 262 HOH HOH . F 4 HOH A 4 404 281 HOH HOH . F 4 HOH A 5 405 343 HOH HOH . F 4 HOH A 6 406 324 HOH HOH . F 4 HOH A 7 407 219 HOH HOH . F 4 HOH A 8 408 248 HOH HOH . F 4 HOH A 9 409 239 HOH HOH . F 4 HOH A 10 410 355 HOH HOH . F 4 HOH A 11 411 258 HOH HOH . F 4 HOH A 12 412 230 HOH HOH . F 4 HOH A 13 413 228 HOH HOH . F 4 HOH A 14 414 341 HOH HOH . F 4 HOH A 15 415 217 HOH HOH . F 4 HOH A 16 416 226 HOH HOH . F 4 HOH A 17 417 266 HOH HOH . F 4 HOH A 18 418 303 HOH HOH . F 4 HOH A 19 419 313 HOH HOH . F 4 HOH A 20 420 260 HOH HOH . F 4 HOH A 21 421 222 HOH HOH . F 4 HOH A 22 422 289 HOH HOH . F 4 HOH A 23 423 213 HOH HOH . F 4 HOH A 24 424 333 HOH HOH . F 4 HOH A 25 425 237 HOH HOH . F 4 HOH A 26 426 292 HOH HOH . F 4 HOH A 27 427 342 HOH HOH . F 4 HOH A 28 428 306 HOH HOH . F 4 HOH A 29 429 221 HOH HOH . F 4 HOH A 30 430 242 HOH HOH . F 4 HOH A 31 431 249 HOH HOH . F 4 HOH A 32 432 275 HOH HOH . F 4 HOH A 33 433 253 HOH HOH . F 4 HOH A 34 434 314 HOH HOH . F 4 HOH A 35 435 251 HOH HOH . F 4 HOH A 36 436 325 HOH HOH . F 4 HOH A 37 437 269 HOH HOH . F 4 HOH A 38 438 259 HOH HOH . F 4 HOH A 39 439 218 HOH HOH . F 4 HOH A 40 440 233 HOH HOH . F 4 HOH A 41 441 273 HOH HOH . F 4 HOH A 42 442 236 HOH HOH . F 4 HOH A 43 443 247 HOH HOH . F 4 HOH A 44 444 327 HOH HOH . F 4 HOH A 45 445 216 HOH HOH . F 4 HOH A 46 446 323 HOH HOH . F 4 HOH A 47 447 284 HOH HOH . F 4 HOH A 48 448 312 HOH HOH . F 4 HOH A 49 449 255 HOH HOH . F 4 HOH A 50 450 335 HOH HOH . F 4 HOH A 51 451 264 HOH HOH . F 4 HOH A 52 452 290 HOH HOH . F 4 HOH A 53 453 214 HOH HOH . F 4 HOH A 54 454 338 HOH HOH . F 4 HOH A 55 455 346 HOH HOH . F 4 HOH A 56 456 305 HOH HOH . F 4 HOH A 57 457 315 HOH HOH . F 4 HOH A 58 458 309 HOH HOH . F 4 HOH A 59 459 272 HOH HOH . F 4 HOH A 60 460 271 HOH HOH . F 4 HOH A 61 461 265 HOH HOH . F 4 HOH A 62 462 256 HOH HOH . F 4 HOH A 63 463 220 HOH HOH . F 4 HOH A 64 464 317 HOH HOH . F 4 HOH A 65 465 348 HOH HOH . F 4 HOH A 66 466 331 HOH HOH . F 4 HOH A 67 467 210 HOH HOH . F 4 HOH A 68 468 294 HOH HOH . F 4 HOH A 69 469 263 HOH HOH . F 4 HOH A 70 470 274 HOH HOH . F 4 HOH A 71 471 351 HOH HOH . F 4 HOH A 72 472 337 HOH HOH . F 4 HOH A 73 473 280 HOH HOH . F 4 HOH A 74 474 296 HOH HOH . F 4 HOH A 75 475 231 HOH HOH . F 4 HOH A 76 476 232 HOH HOH . F 4 HOH A 77 477 308 HOH HOH . F 4 HOH A 78 478 209 HOH HOH . F 4 HOH A 79 479 267 HOH HOH . F 4 HOH A 80 480 224 HOH HOH . F 4 HOH A 81 481 211 HOH HOH . F 4 HOH A 82 482 295 HOH HOH . F 4 HOH A 83 483 336 HOH HOH . F 4 HOH A 84 484 352 HOH HOH . F 4 HOH A 85 485 278 HOH HOH . F 4 HOH A 86 486 282 HOH HOH . F 4 HOH A 87 487 229 HOH HOH . F 4 HOH A 88 488 244 HOH HOH . F 4 HOH A 89 489 319 HOH HOH . F 4 HOH A 90 490 297 HOH HOH . F 4 HOH A 91 491 225 HOH HOH . F 4 HOH A 92 492 254 HOH HOH . F 4 HOH A 93 493 326 HOH HOH . F 4 HOH A 94 494 235 HOH HOH . F 4 HOH A 95 495 285 HOH HOH . F 4 HOH A 96 496 286 HOH HOH . F 4 HOH A 97 497 339 HOH HOH . F 4 HOH A 98 498 257 HOH HOH . F 4 HOH A 99 499 241 HOH HOH . F 4 HOH A 100 500 277 HOH HOH . F 4 HOH A 101 501 302 HOH HOH . F 4 HOH A 102 502 215 HOH HOH . F 4 HOH A 103 503 243 HOH HOH . F 4 HOH A 104 504 223 HOH HOH . F 4 HOH A 105 505 283 HOH HOH . F 4 HOH A 106 506 322 HOH HOH . F 4 HOH A 107 507 353 HOH HOH . F 4 HOH A 108 508 347 HOH HOH . F 4 HOH A 109 509 321 HOH HOH . F 4 HOH A 110 510 261 HOH HOH . F 4 HOH A 111 511 252 HOH HOH . F 4 HOH A 112 512 270 HOH HOH . F 4 HOH A 113 513 316 HOH HOH . F 4 HOH A 114 514 238 HOH HOH . F 4 HOH A 115 515 212 HOH HOH . F 4 HOH A 116 516 234 HOH HOH . F 4 HOH A 117 517 227 HOH HOH . F 4 HOH A 118 518 328 HOH HOH . F 4 HOH A 119 519 320 HOH HOH . F 4 HOH A 120 520 350 HOH HOH . F 4 HOH A 121 521 349 HOH HOH . F 4 HOH A 122 522 250 HOH HOH . F 4 HOH A 123 523 307 HOH HOH . F 4 HOH A 124 524 299 HOH HOH . F 4 HOH A 125 525 340 HOH HOH . F 4 HOH A 126 526 246 HOH HOH . F 4 HOH A 127 527 276 HOH HOH . F 4 HOH A 128 528 240 HOH HOH . F 4 HOH A 129 529 311 HOH HOH . F 4 HOH A 130 530 301 HOH HOH . F 4 HOH A 131 531 304 HOH HOH . F 4 HOH A 132 532 245 HOH HOH . F 4 HOH A 133 533 287 HOH HOH . F 4 HOH A 134 534 293 HOH HOH . F 4 HOH A 135 535 288 HOH HOH . F 4 HOH A 136 536 300 HOH HOH . F 4 HOH A 137 537 345 HOH HOH . F 4 HOH A 138 538 291 HOH HOH . F 4 HOH A 139 539 330 HOH HOH . F 4 HOH A 140 540 334 HOH HOH . F 4 HOH A 141 541 298 HOH HOH . F 4 HOH A 142 542 268 HOH HOH . F 4 HOH A 143 543 354 HOH HOH . F 4 HOH A 144 544 310 HOH HOH . F 4 HOH A 145 545 318 HOH HOH . F 4 HOH A 146 546 332 HOH HOH . F 4 HOH A 147 547 279 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TLA . . . B 2 11.916 19.711 11.281 1 25.82 ? O1 TLA 301 A 1 HETATM 2 O O11 TLA . . . B 2 11.363 18.259 12.876 1 22.95 ? O11 TLA 301 A 1 HETATM 3 C C1 TLA . . . B 2 12.14 18.739 12.012 1 21.85 ? C1 TLA 301 A 1 HETATM 4 C C2 TLA . . . B 2 13.45 17.988 11.888 1 24 ? C2 TLA 301 A 1 HETATM 5 O O2 TLA . . . B 2 13.34 16.821 12.622 1 25.27 ? O2 TLA 301 A 1 HETATM 6 C C3 TLA . . . B 2 14.568 18.888 12.389 1 26.67 ? C3 TLA 301 A 1 HETATM 7 O O3 TLA . . . B 2 14.251 19.272 13.779 1 25.95 ? O3 TLA 301 A 1 HETATM 8 C C4 TLA . . . B 2 15.897 18.189 12.231 1 33.5 ? C4 TLA 301 A 1 HETATM 9 O O4 TLA . . . B 2 16.318 18.022 11.039 1 31.22 ? O4 TLA 301 A 1 HETATM 10 O O41 TLA . . . B 2 16.485 17.756 13.222 1 30.95 ? O41 TLA 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 402 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #