data_5KVX
#
_model_server_result.job_id            8xAYZ4SDneGwz-zbobdIPg 
_model_server_result.datetime_utc      '2024-11-15 06:42:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kvx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    5KVX 
#
_exptl.entry_id    5KVX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KVX 
_cell.length_a            57.57 
_cell.length_b            57.57 
_cell.length_c            151.094 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KVX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 66 A CYS 66 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.099 ? 
disulf ? disulf3 A SG CYS 56 A CYS 56 1_555 A SG CYS 66 A CYS 66 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf4 A SG CYS 71 A CYS 71 1_555 A SG CYS 77 A CYS 77 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf5 A SG CYS 71 A CYS 71 1_555 A SG CYS 77 A CYS 77 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 A SG CYS 121 A CYS 121 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.151 ? 
disulf ? disulf7 A SG CYS 121 A CYS 121 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.076 ? 
disulf ? disulf8 A SG CYS 126 A CYS 126 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
disulf ? disulf9 A SG CYS 134 A CYS 134 1_555 A SG CYS 145 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
disulf ? disulf10 A SG CYS 149 A CYS 149 1_555 A SG CYS 158 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
disulf ? disulf11 A SG CYS 159 A CYS 159 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5KVX 
_atom_sites.fract_transf_matrix[1][1]    0.01737 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01737 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006618 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 TLA A 1 301 208 TLA TLA . 
C 3 GOL A 1 302 1 GOL GOL . 
D 3 GOL A 1 303 2 GOL GOL . 
E 3 GOL A 1 304 3 GOL GOL . 
F 4 HOH A 1 401 294 HOH HOH . 
F 4 HOH A 2 402 212 HOH HOH . 
F 4 HOH A 3 403 345 HOH HOH . 
F 4 HOH A 4 404 350 HOH HOH . 
F 4 HOH A 5 405 264 HOH HOH . 
F 4 HOH A 6 406 339 HOH HOH . 
F 4 HOH A 7 407 258 HOH HOH . 
F 4 HOH A 8 408 252 HOH HOH . 
F 4 HOH A 9 409 342 HOH HOH . 
F 4 HOH A 10 410 248 HOH HOH . 
F 4 HOH A 11 411 247 HOH HOH . 
F 4 HOH A 12 412 329 HOH HOH . 
F 4 HOH A 13 413 296 HOH HOH . 
F 4 HOH A 14 414 334 HOH HOH . 
F 4 HOH A 15 415 239 HOH HOH . 
F 4 HOH A 16 416 282 HOH HOH . 
F 4 HOH A 17 417 237 HOH HOH . 
F 4 HOH A 18 418 279 HOH HOH . 
F 4 HOH A 19 419 285 HOH HOH . 
F 4 HOH A 20 420 286 HOH HOH . 
F 4 HOH A 21 421 259 HOH HOH . 
F 4 HOH A 22 422 253 HOH HOH . 
F 4 HOH A 23 423 210 HOH HOH . 
F 4 HOH A 24 424 241 HOH HOH . 
F 4 HOH A 25 425 278 HOH HOH . 
F 4 HOH A 26 426 229 HOH HOH . 
F 4 HOH A 27 427 225 HOH HOH . 
F 4 HOH A 28 428 303 HOH HOH . 
F 4 HOH A 29 429 216 HOH HOH . 
F 4 HOH A 30 430 227 HOH HOH . 
F 4 HOH A 31 431 217 HOH HOH . 
F 4 HOH A 32 432 319 HOH HOH . 
F 4 HOH A 33 433 261 HOH HOH . 
F 4 HOH A 34 434 271 HOH HOH . 
F 4 HOH A 35 435 312 HOH HOH . 
F 4 HOH A 36 436 220 HOH HOH . 
F 4 HOH A 37 437 313 HOH HOH . 
F 4 HOH A 38 438 267 HOH HOH . 
F 4 HOH A 39 439 246 HOH HOH . 
F 4 HOH A 40 440 218 HOH HOH . 
F 4 HOH A 41 441 270 HOH HOH . 
F 4 HOH A 42 442 223 HOH HOH . 
F 4 HOH A 43 443 331 HOH HOH . 
F 4 HOH A 44 444 333 HOH HOH . 
F 4 HOH A 45 445 272 HOH HOH . 
F 4 HOH A 46 446 230 HOH HOH . 
F 4 HOH A 47 447 336 HOH HOH . 
F 4 HOH A 48 448 307 HOH HOH . 
F 4 HOH A 49 449 215 HOH HOH . 
F 4 HOH A 50 450 321 HOH HOH . 
F 4 HOH A 51 451 255 HOH HOH . 
F 4 HOH A 52 452 337 HOH HOH . 
F 4 HOH A 53 453 330 HOH HOH . 
F 4 HOH A 54 454 288 HOH HOH . 
F 4 HOH A 55 455 273 HOH HOH . 
F 4 HOH A 56 456 310 HOH HOH . 
F 4 HOH A 57 457 262 HOH HOH . 
F 4 HOH A 58 458 232 HOH HOH . 
F 4 HOH A 59 459 243 HOH HOH . 
F 4 HOH A 60 460 219 HOH HOH . 
F 4 HOH A 61 461 322 HOH HOH . 
F 4 HOH A 62 462 240 HOH HOH . 
F 4 HOH A 63 463 256 HOH HOH . 
F 4 HOH A 64 464 320 HOH HOH . 
F 4 HOH A 65 465 301 HOH HOH . 
F 4 HOH A 66 466 302 HOH HOH . 
F 4 HOH A 67 467 221 HOH HOH . 
F 4 HOH A 68 468 213 HOH HOH . 
F 4 HOH A 69 469 276 HOH HOH . 
F 4 HOH A 70 470 300 HOH HOH . 
F 4 HOH A 71 471 332 HOH HOH . 
F 4 HOH A 72 472 250 HOH HOH . 
F 4 HOH A 73 473 235 HOH HOH . 
F 4 HOH A 74 474 209 HOH HOH . 
F 4 HOH A 75 475 224 HOH HOH . 
F 4 HOH A 76 476 283 HOH HOH . 
F 4 HOH A 77 477 325 HOH HOH . 
F 4 HOH A 78 478 257 HOH HOH . 
F 4 HOH A 79 479 324 HOH HOH . 
F 4 HOH A 80 480 238 HOH HOH . 
F 4 HOH A 81 481 290 HOH HOH . 
F 4 HOH A 82 482 214 HOH HOH . 
F 4 HOH A 83 483 349 HOH HOH . 
F 4 HOH A 84 484 242 HOH HOH . 
F 4 HOH A 85 485 228 HOH HOH . 
F 4 HOH A 86 486 318 HOH HOH . 
F 4 HOH A 87 487 263 HOH HOH . 
F 4 HOH A 88 488 311 HOH HOH . 
F 4 HOH A 89 489 275 HOH HOH . 
F 4 HOH A 90 490 260 HOH HOH . 
F 4 HOH A 91 491 269 HOH HOH . 
F 4 HOH A 92 492 297 HOH HOH . 
F 4 HOH A 93 493 338 HOH HOH . 
F 4 HOH A 94 494 280 HOH HOH . 
F 4 HOH A 95 495 293 HOH HOH . 
F 4 HOH A 96 496 236 HOH HOH . 
F 4 HOH A 97 497 234 HOH HOH . 
F 4 HOH A 98 498 335 HOH HOH . 
F 4 HOH A 99 499 222 HOH HOH . 
F 4 HOH A 100 500 251 HOH HOH . 
F 4 HOH A 101 501 289 HOH HOH . 
F 4 HOH A 102 502 211 HOH HOH . 
F 4 HOH A 103 503 323 HOH HOH . 
F 4 HOH A 104 504 316 HOH HOH . 
F 4 HOH A 105 505 281 HOH HOH . 
F 4 HOH A 106 506 231 HOH HOH . 
F 4 HOH A 107 507 317 HOH HOH . 
F 4 HOH A 108 508 340 HOH HOH . 
F 4 HOH A 109 509 309 HOH HOH . 
F 4 HOH A 110 510 249 HOH HOH . 
F 4 HOH A 111 511 254 HOH HOH . 
F 4 HOH A 112 512 347 HOH HOH . 
F 4 HOH A 113 513 245 HOH HOH . 
F 4 HOH A 114 514 268 HOH HOH . 
F 4 HOH A 115 515 284 HOH HOH . 
F 4 HOH A 116 516 343 HOH HOH . 
F 4 HOH A 117 517 233 HOH HOH . 
F 4 HOH A 118 518 346 HOH HOH . 
F 4 HOH A 119 519 226 HOH HOH . 
F 4 HOH A 120 520 298 HOH HOH . 
F 4 HOH A 121 521 274 HOH HOH . 
F 4 HOH A 122 522 304 HOH HOH . 
F 4 HOH A 123 523 265 HOH HOH . 
F 4 HOH A 124 524 295 HOH HOH . 
F 4 HOH A 125 525 328 HOH HOH . 
F 4 HOH A 126 526 299 HOH HOH . 
F 4 HOH A 127 527 244 HOH HOH . 
F 4 HOH A 128 528 291 HOH HOH . 
F 4 HOH A 129 529 327 HOH HOH . 
F 4 HOH A 130 530 344 HOH HOH . 
F 4 HOH A 131 531 315 HOH HOH . 
F 4 HOH A 132 532 306 HOH HOH . 
F 4 HOH A 133 533 292 HOH HOH . 
F 4 HOH A 134 534 305 HOH HOH . 
F 4 HOH A 135 535 326 HOH HOH . 
F 4 HOH A 136 536 287 HOH HOH . 
F 4 HOH A 137 537 348 HOH HOH . 
F 4 HOH A 138 538 341 HOH HOH . 
F 4 HOH A 139 539 314 HOH HOH . 
F 4 HOH A 140 540 277 HOH HOH . 
F 4 HOH A 141 541 308 HOH HOH . 
F 4 HOH A 142 542 266 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 11.64 20.918 45.031 1 45.45 ? C1 GOL 304 A 1 
HETATM 2 O O1 GOL . . . E 3 12.489 21.438 46.042 1 51.1 ? O1 GOL 304 A 1 
HETATM 3 C C2 GOL . . . E 3 12.475 20.427 43.881 1 53.96 ? C2 GOL 304 A 1 
HETATM 4 O O2 GOL . . . E 3 12.581 19.024 44.004 1 59.14 ? O2 GOL 304 A 1 
HETATM 5 C C3 GOL . . . E 3 11.83 20.637 42.533 1 44.25 ? C3 GOL 304 A 1 
HETATM 6 O O3 GOL . . . E 3 12.909 20.615 41.631 1 43.68 ? O3 GOL 304 A 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#