data_5KVZ # _model_server_result.job_id yWwIS0_NHrx7glAGE1QuJg _model_server_result.datetime_utc '2024-11-15 07:33:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kvz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5KVZ # _exptl.entry_id 5KVZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'L(+)-TARTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KVZ _cell.length_a 57.671 _cell.length_b 57.671 _cell.length_c 151.176 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KVZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 66 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? disulf ? disulf3 A SG CYS 71 A CYS 71 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf4 A SG CYS 121 A CYS 121 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.142 ? disulf ? disulf5 A SG CYS 126 A CYS 126 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.177 ? disulf ? disulf6 A SG CYS 134 A CYS 134 1_555 A SG CYS 145 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? disulf ? disulf7 A SG CYS 149 A CYS 149 1_555 A SG CYS 158 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? disulf ? disulf8 A SG CYS 159 A CYS 159 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? # _chem_comp.formula 'C4 H6 O6' _chem_comp.formula_weight 150.087 _chem_comp.id TLA _chem_comp.mon_nstd_flag . _chem_comp.name 'L(+)-TARTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 TLA doub 298 n n O11 C1 TLA sing 299 n n O11 H11 TLA sing 300 n n C1 C2 TLA sing 301 n n C2 O2 TLA sing 302 n n C2 C3 TLA sing 303 n n C2 H2 TLA sing 304 n n O2 HA TLA sing 305 n n C3 O3 TLA sing 306 n n C3 C4 TLA sing 307 n n C3 H3 TLA sing 308 n n O3 HB TLA sing 309 n n C4 O4 TLA doub 310 n n C4 O41 TLA sing 311 n n O41 H41 TLA sing 312 n n # _atom_sites.entry_id 5KVZ _atom_sites.fract_transf_matrix[1][1] 0.01734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006615 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TLA A 1 301 208 TLA TLA . C 3 GOL A 1 302 1 GOL GOL . D 3 GOL A 1 303 2 GOL GOL . E 4 HOH A 1 401 324 HOH HOH . E 4 HOH A 2 402 259 HOH HOH . E 4 HOH A 3 403 313 HOH HOH . E 4 HOH A 4 404 237 HOH HOH . E 4 HOH A 5 405 253 HOH HOH . E 4 HOH A 6 406 258 HOH HOH . E 4 HOH A 7 407 248 HOH HOH . E 4 HOH A 8 408 266 HOH HOH . E 4 HOH A 9 409 310 HOH HOH . E 4 HOH A 10 410 262 HOH HOH . E 4 HOH A 11 411 308 HOH HOH . E 4 HOH A 12 412 249 HOH HOH . E 4 HOH A 13 413 319 HOH HOH . E 4 HOH A 14 414 278 HOH HOH . E 4 HOH A 15 415 210 HOH HOH . E 4 HOH A 16 416 318 HOH HOH . E 4 HOH A 17 417 270 HOH HOH . E 4 HOH A 18 418 231 HOH HOH . E 4 HOH A 19 419 325 HOH HOH . E 4 HOH A 20 420 302 HOH HOH . E 4 HOH A 21 421 229 HOH HOH . E 4 HOH A 22 422 288 HOH HOH . E 4 HOH A 23 423 292 HOH HOH . E 4 HOH A 24 424 272 HOH HOH . E 4 HOH A 25 425 235 HOH HOH . E 4 HOH A 26 426 220 HOH HOH . E 4 HOH A 27 427 230 HOH HOH . E 4 HOH A 28 428 256 HOH HOH . E 4 HOH A 29 429 225 HOH HOH . E 4 HOH A 30 430 294 HOH HOH . E 4 HOH A 31 431 317 HOH HOH . E 4 HOH A 32 432 282 HOH HOH . E 4 HOH A 33 433 300 HOH HOH . E 4 HOH A 34 434 218 HOH HOH . E 4 HOH A 35 435 260 HOH HOH . E 4 HOH A 36 436 252 HOH HOH . E 4 HOH A 37 437 327 HOH HOH . E 4 HOH A 38 438 312 HOH HOH . E 4 HOH A 39 439 277 HOH HOH . E 4 HOH A 40 440 293 HOH HOH . E 4 HOH A 41 441 285 HOH HOH . E 4 HOH A 42 442 234 HOH HOH . E 4 HOH A 43 443 227 HOH HOH . E 4 HOH A 44 444 223 HOH HOH . E 4 HOH A 45 445 243 HOH HOH . E 4 HOH A 46 446 265 HOH HOH . E 4 HOH A 47 447 263 HOH HOH . E 4 HOH A 48 448 255 HOH HOH . E 4 HOH A 49 449 247 HOH HOH . E 4 HOH A 50 450 217 HOH HOH . E 4 HOH A 51 451 228 HOH HOH . E 4 HOH A 52 452 216 HOH HOH . E 4 HOH A 53 453 219 HOH HOH . E 4 HOH A 54 454 257 HOH HOH . E 4 HOH A 55 455 315 HOH HOH . E 4 HOH A 56 456 240 HOH HOH . E 4 HOH A 57 457 213 HOH HOH . E 4 HOH A 58 458 254 HOH HOH . E 4 HOH A 59 459 242 HOH HOH . E 4 HOH A 60 460 241 HOH HOH . E 4 HOH A 61 461 269 HOH HOH . E 4 HOH A 62 462 297 HOH HOH . E 4 HOH A 63 463 215 HOH HOH . E 4 HOH A 64 464 209 HOH HOH . E 4 HOH A 65 465 214 HOH HOH . E 4 HOH A 66 466 251 HOH HOH . E 4 HOH A 67 467 309 HOH HOH . E 4 HOH A 68 468 271 HOH HOH . E 4 HOH A 69 469 211 HOH HOH . E 4 HOH A 70 470 291 HOH HOH . E 4 HOH A 71 471 299 HOH HOH . E 4 HOH A 72 472 267 HOH HOH . E 4 HOH A 73 473 301 HOH HOH . E 4 HOH A 74 474 264 HOH HOH . E 4 HOH A 75 475 224 HOH HOH . E 4 HOH A 76 476 304 HOH HOH . E 4 HOH A 77 477 298 HOH HOH . E 4 HOH A 78 478 275 HOH HOH . E 4 HOH A 79 479 239 HOH HOH . E 4 HOH A 80 480 221 HOH HOH . E 4 HOH A 81 481 289 HOH HOH . E 4 HOH A 82 482 233 HOH HOH . E 4 HOH A 83 483 261 HOH HOH . E 4 HOH A 84 484 274 HOH HOH . E 4 HOH A 85 485 279 HOH HOH . E 4 HOH A 86 486 323 HOH HOH . E 4 HOH A 87 487 222 HOH HOH . E 4 HOH A 88 488 244 HOH HOH . E 4 HOH A 89 489 322 HOH HOH . E 4 HOH A 90 490 311 HOH HOH . E 4 HOH A 91 491 321 HOH HOH . E 4 HOH A 92 492 283 HOH HOH . E 4 HOH A 93 493 306 HOH HOH . E 4 HOH A 94 494 226 HOH HOH . E 4 HOH A 95 495 250 HOH HOH . E 4 HOH A 96 496 236 HOH HOH . E 4 HOH A 97 497 280 HOH HOH . E 4 HOH A 98 498 295 HOH HOH . E 4 HOH A 99 499 287 HOH HOH . E 4 HOH A 100 500 281 HOH HOH . E 4 HOH A 101 501 212 HOH HOH . E 4 HOH A 102 502 305 HOH HOH . E 4 HOH A 103 503 268 HOH HOH . E 4 HOH A 104 504 232 HOH HOH . E 4 HOH A 105 505 246 HOH HOH . E 4 HOH A 106 506 320 HOH HOH . E 4 HOH A 107 507 284 HOH HOH . E 4 HOH A 108 508 273 HOH HOH . E 4 HOH A 109 509 245 HOH HOH . E 4 HOH A 110 510 238 HOH HOH . E 4 HOH A 111 511 314 HOH HOH . E 4 HOH A 112 512 316 HOH HOH . E 4 HOH A 113 513 290 HOH HOH . E 4 HOH A 114 514 303 HOH HOH . E 4 HOH A 115 515 307 HOH HOH . E 4 HOH A 116 516 276 HOH HOH . E 4 HOH A 117 517 286 HOH HOH . E 4 HOH A 118 518 296 HOH HOH . E 4 HOH A 119 519 328 HOH HOH . E 4 HOH A 120 520 326 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TLA . . . B 2 11.92 19.765 11.292 1 28.36 ? O1 TLA 301 A 1 HETATM 2 O O11 TLA . . . B 2 11.414 18.327 12.947 1 27.1 ? O11 TLA 301 A 1 HETATM 3 C C1 TLA . . . B 2 12.132 18.8 12.049 1 26.86 ? C1 TLA 301 A 1 HETATM 4 C C2 TLA . . . B 2 13.444 18.061 11.924 1 29.68 ? C2 TLA 301 A 1 HETATM 5 O O2 TLA . . . B 2 13.379 16.834 12.681 1 30.03 ? O2 TLA 301 A 1 HETATM 6 C C3 TLA . . . B 2 14.539 18.987 12.404 1 33.55 ? C3 TLA 301 A 1 HETATM 7 O O3 TLA . . . B 2 14.279 19.321 13.772 1 31.77 ? O3 TLA 301 A 1 HETATM 8 C C4 TLA . . . B 2 15.843 18.227 12.258 1 41.59 ? C4 TLA 301 A 1 HETATM 9 O O4 TLA . . . B 2 16.223 18.018 11.053 1 41.78 ? O4 TLA 301 A 1 HETATM 10 O O41 TLA . . . B 2 16.443 17.809 13.305 1 40.23 ? O41 TLA 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #