data_5KW0 # _model_server_result.job_id OBITNVRgX-16Vyi_YpUb5Q _model_server_result.datetime_utc '2024-11-15 06:58:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kw0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5KW0 # _exptl.entry_id 5KW0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KW0 _cell.length_a 57.814 _cell.length_b 57.814 _cell.length_c 151.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KW0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 66 A CYS 66 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 71 A CYS 71 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? disulf ? disulf4 A SG CYS 121 A CYS 121 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.095 ? disulf ? disulf5 A SG CYS 126 A CYS 126 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? disulf ? disulf6 A SG CYS 134 A CYS 134 1_555 A SG CYS 145 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? disulf ? disulf7 A SG CYS 149 A CYS 149 1_555 A SG CYS 158 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5KW0 _atom_sites.fract_transf_matrix[1][1] 0.017297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017297 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TLA A 1 301 208 TLA TLA . C 3 GOL A 1 302 1 GOL GOL . D 4 HOH A 1 401 245 HOH HOH . D 4 HOH A 2 402 273 HOH HOH . D 4 HOH A 3 403 307 HOH HOH . D 4 HOH A 4 404 270 HOH HOH . D 4 HOH A 5 405 251 HOH HOH . D 4 HOH A 6 406 264 HOH HOH . D 4 HOH A 7 407 256 HOH HOH . D 4 HOH A 8 408 267 HOH HOH . D 4 HOH A 9 409 252 HOH HOH . D 4 HOH A 10 410 227 HOH HOH . D 4 HOH A 11 411 258 HOH HOH . D 4 HOH A 12 412 306 HOH HOH . D 4 HOH A 13 413 210 HOH HOH . D 4 HOH A 14 414 217 HOH HOH . D 4 HOH A 15 415 235 HOH HOH . D 4 HOH A 16 416 303 HOH HOH . D 4 HOH A 17 417 242 HOH HOH . D 4 HOH A 18 418 220 HOH HOH . D 4 HOH A 19 419 285 HOH HOH . D 4 HOH A 20 420 239 HOH HOH . D 4 HOH A 21 421 299 HOH HOH . D 4 HOH A 22 422 298 HOH HOH . D 4 HOH A 23 423 278 HOH HOH . D 4 HOH A 24 424 218 HOH HOH . D 4 HOH A 25 425 224 HOH HOH . D 4 HOH A 26 426 257 HOH HOH . D 4 HOH A 27 427 221 HOH HOH . D 4 HOH A 28 428 222 HOH HOH . D 4 HOH A 29 429 209 HOH HOH . D 4 HOH A 30 430 263 HOH HOH . D 4 HOH A 31 431 288 HOH HOH . D 4 HOH A 32 432 226 HOH HOH . D 4 HOH A 33 433 225 HOH HOH . D 4 HOH A 34 434 268 HOH HOH . D 4 HOH A 35 435 269 HOH HOH . D 4 HOH A 36 436 213 HOH HOH . D 4 HOH A 37 437 254 HOH HOH . D 4 HOH A 38 438 250 HOH HOH . D 4 HOH A 39 439 230 HOH HOH . D 4 HOH A 40 440 223 HOH HOH . D 4 HOH A 41 441 233 HOH HOH . D 4 HOH A 42 442 216 HOH HOH . D 4 HOH A 43 443 291 HOH HOH . D 4 HOH A 44 444 265 HOH HOH . D 4 HOH A 45 445 261 HOH HOH . D 4 HOH A 46 446 219 HOH HOH . D 4 HOH A 47 447 260 HOH HOH . D 4 HOH A 48 448 229 HOH HOH . D 4 HOH A 49 449 240 HOH HOH . D 4 HOH A 50 450 309 HOH HOH . D 4 HOH A 51 451 289 HOH HOH . D 4 HOH A 52 452 232 HOH HOH . D 4 HOH A 53 453 282 HOH HOH . D 4 HOH A 54 454 236 HOH HOH . D 4 HOH A 55 455 294 HOH HOH . D 4 HOH A 56 456 243 HOH HOH . D 4 HOH A 57 457 244 HOH HOH . D 4 HOH A 58 458 302 HOH HOH . D 4 HOH A 59 459 214 HOH HOH . D 4 HOH A 60 460 311 HOH HOH . D 4 HOH A 61 461 259 HOH HOH . D 4 HOH A 62 462 211 HOH HOH . D 4 HOH A 63 463 276 HOH HOH . D 4 HOH A 64 464 262 HOH HOH . D 4 HOH A 65 465 215 HOH HOH . D 4 HOH A 66 466 277 HOH HOH . D 4 HOH A 67 467 246 HOH HOH . D 4 HOH A 68 468 238 HOH HOH . D 4 HOH A 69 469 266 HOH HOH . D 4 HOH A 70 470 255 HOH HOH . D 4 HOH A 71 471 296 HOH HOH . D 4 HOH A 72 472 280 HOH HOH . D 4 HOH A 73 473 308 HOH HOH . D 4 HOH A 74 474 271 HOH HOH . D 4 HOH A 75 475 212 HOH HOH . D 4 HOH A 76 476 281 HOH HOH . D 4 HOH A 77 477 234 HOH HOH . D 4 HOH A 78 478 253 HOH HOH . D 4 HOH A 79 479 237 HOH HOH . D 4 HOH A 80 480 241 HOH HOH . D 4 HOH A 81 481 231 HOH HOH . D 4 HOH A 82 482 286 HOH HOH . D 4 HOH A 83 483 247 HOH HOH . D 4 HOH A 84 484 272 HOH HOH . D 4 HOH A 85 485 284 HOH HOH . D 4 HOH A 86 486 274 HOH HOH . D 4 HOH A 87 487 295 HOH HOH . D 4 HOH A 88 488 275 HOH HOH . D 4 HOH A 89 489 283 HOH HOH . D 4 HOH A 90 490 300 HOH HOH . D 4 HOH A 91 491 249 HOH HOH . D 4 HOH A 92 492 279 HOH HOH . D 4 HOH A 93 493 287 HOH HOH . D 4 HOH A 94 494 228 HOH HOH . D 4 HOH A 95 495 310 HOH HOH . D 4 HOH A 96 496 305 HOH HOH . D 4 HOH A 97 497 297 HOH HOH . D 4 HOH A 98 498 293 HOH HOH . D 4 HOH A 99 499 248 HOH HOH . D 4 HOH A 100 500 290 HOH HOH . D 4 HOH A 101 501 304 HOH HOH . D 4 HOH A 102 502 292 HOH HOH . D 4 HOH A 103 503 301 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 10.93 31.574 44.316 1 54.89 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 3 11.338 30.266 43.832 1 51.23 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 3 9.563 31.441 44.918 1 48.47 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 3 9.885 31.724 46.3 1 47.93 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 3 8.399 32.335 44.416 1 42.99 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 3 8.435 32.964 43.115 1 31.54 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #