data_5KW2 # _model_server_result.job_id V32hQ4XR3EegL_qMlRZorQ _model_server_result.datetime_utc '2024-12-18 01:57:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kw2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2401}' # _entry.id 5KW2 # _exptl.entry_id 5KW2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 623.781 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3~{S})-3-cyclopropyl-3-[2-[1-[2-[2,2-dimethylpropyl-(6-methylpyridin-2-yl)carbamoyl]-5-methoxy-phenyl]piperidin-4-yl]-1-benzofuran-6-yl]propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.77 _cell.angle_gamma 90 _cell.entry_id 5KW2 _cell.length_a 147.654 _cell.length_b 55.95 _cell.length_c 80.313 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KW2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 92 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 79 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 183 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 170 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.038 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C38 H45 N3 O5' _chem_comp.formula_weight 623.781 _chem_comp.id 6XQ _chem_comp.mon_nstd_flag . _chem_comp.name '(3~{S})-3-cyclopropyl-3-[2-[1-[2-[2,2-dimethylpropyl-(6-methylpyridin-2-yl)carbamoyl]-5-methoxy-phenyl]piperidin-4-yl]-1-benzofuran-6-yl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C6 6XQ doub 1 n n C1 C3 6XQ sing 2 n n C1 C2 6XQ sing 3 n n C3 C2 6XQ sing 4 n n C3 C4 6XQ sing 5 n n C6 C5 6XQ sing 6 n n C6 O2 6XQ sing 7 n n C5 C4 6XQ sing 8 n n C4 C7 6XQ sing 9 n n C12 C7 6XQ doub 10 n y C12 C11 6XQ sing 11 n y C7 C8 6XQ sing 12 n y C11 C10 6XQ doub 13 n y C8 C9 6XQ doub 14 n y C10 C9 6XQ sing 15 n y C10 C13 6XQ sing 16 n y C9 O5 6XQ sing 17 n y C13 C14 6XQ doub 18 n y O5 C14 6XQ sing 19 n y C14 C15 6XQ sing 20 n n C30 C29 6XQ sing 21 n n C15 C38 6XQ sing 22 n n C15 C16 6XQ sing 23 n n C38 C37 6XQ sing 24 n n C16 C17 6XQ sing 25 n n C29 C28 6XQ doub 26 n y C29 N3 6XQ sing 27 n y C28 C27 6XQ sing 28 n y N3 C25 6XQ doub 29 n y C37 N1 6XQ sing 30 n n C17 N1 6XQ sing 31 n n C33 C32 6XQ sing 32 n n C34 C32 6XQ sing 33 n n N1 C18 6XQ sing 34 n n C27 C26 6XQ doub 35 n y C25 C26 6XQ sing 36 n y C25 N2 6XQ sing 37 n n C32 C35 6XQ sing 38 n n C32 C31 6XQ sing 39 n n N2 C24 6XQ sing 40 n n N2 C31 6XQ sing 41 n n O3 C24 6XQ doub 42 n n C24 C23 6XQ sing 43 n n C18 C23 6XQ doub 44 n y C18 C19 6XQ sing 45 n y C23 C22 6XQ sing 46 n y C19 C20 6XQ doub 47 n y C22 C21 6XQ doub 48 n y C20 C21 6XQ sing 49 n y C20 O4 6XQ sing 50 n n C36 O4 6XQ sing 51 n n O2 H1 6XQ sing 52 n n C1 H2 6XQ sing 53 n n C1 H3 6XQ sing 54 n n C5 H4 6XQ sing 55 n n C5 H5 6XQ sing 56 n n C4 H6 6XQ sing 57 n n C3 H7 6XQ sing 58 n n C2 H8 6XQ sing 59 n n C2 H9 6XQ sing 60 n n C31 H10 6XQ sing 61 n n C31 H11 6XQ sing 62 n n C35 H12 6XQ sing 63 n n C35 H13 6XQ sing 64 n n C35 H14 6XQ sing 65 n n C34 H15 6XQ sing 66 n n C34 H16 6XQ sing 67 n n C34 H17 6XQ sing 68 n n C33 H18 6XQ sing 69 n n C33 H19 6XQ sing 70 n n C33 H20 6XQ sing 71 n n C30 H21 6XQ sing 72 n n C30 H22 6XQ sing 73 n n C30 H23 6XQ sing 74 n n C28 H24 6XQ sing 75 n n C27 H25 6XQ sing 76 n n C26 H26 6XQ sing 77 n n C22 H27 6XQ sing 78 n n C21 H28 6XQ sing 79 n n C36 H29 6XQ sing 80 n n C36 H30 6XQ sing 81 n n C36 H31 6XQ sing 82 n n C19 H32 6XQ sing 83 n n C17 H33 6XQ sing 84 n n C17 H34 6XQ sing 85 n n C16 H35 6XQ sing 86 n n C16 H36 6XQ sing 87 n n C37 H37 6XQ sing 88 n n C37 H38 6XQ sing 89 n n C38 H39 6XQ sing 90 n n C38 H40 6XQ sing 91 n n C15 H41 6XQ sing 92 n n C8 H42 6XQ sing 93 n n C13 H43 6XQ sing 94 n n C11 H44 6XQ sing 95 n n C12 H45 6XQ sing 96 n n # _atom_sites.entry_id 5KW2 _atom_sites.fract_transf_matrix[1][1] 0.006773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000446 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6XQ A 1 2401 1 6XQ SX1 . C 3 HOH A 1 2501 2 HOH HOH . C 3 HOH A 2 2502 19 HOH HOH . C 3 HOH A 3 2503 12 HOH HOH . C 3 HOH A 4 2504 7 HOH HOH . C 3 HOH A 5 2505 47 HOH HOH . C 3 HOH A 6 2506 23 HOH HOH . C 3 HOH A 7 2507 45 HOH HOH . C 3 HOH A 8 2508 30 HOH HOH . C 3 HOH A 9 2509 16 HOH HOH . C 3 HOH A 10 2510 50 HOH HOH . C 3 HOH A 11 2511 44 HOH HOH . C 3 HOH A 12 2512 41 HOH HOH . C 3 HOH A 13 2513 9 HOH HOH . C 3 HOH A 14 2514 20 HOH HOH . C 3 HOH A 15 2515 35 HOH HOH . C 3 HOH A 16 2516 49 HOH HOH . C 3 HOH A 17 2517 21 HOH HOH . C 3 HOH A 18 2518 24 HOH HOH . C 3 HOH A 19 2519 8 HOH HOH . C 3 HOH A 20 2520 6 HOH HOH . C 3 HOH A 21 2521 40 HOH HOH . C 3 HOH A 22 2522 29 HOH HOH . C 3 HOH A 23 2523 5 HOH HOH . C 3 HOH A 24 2524 42 HOH HOH . C 3 HOH A 25 2525 26 HOH HOH . C 3 HOH A 26 2526 52 HOH HOH . C 3 HOH A 27 2527 34 HOH HOH . C 3 HOH A 28 2528 36 HOH HOH . C 3 HOH A 29 2529 4 HOH HOH . C 3 HOH A 30 2530 22 HOH HOH . C 3 HOH A 31 2531 51 HOH HOH . C 3 HOH A 32 2532 43 HOH HOH . C 3 HOH A 33 2533 17 HOH HOH . C 3 HOH A 34 2534 48 HOH HOH . C 3 HOH A 35 2535 39 HOH HOH . C 3 HOH A 36 2536 37 HOH HOH . C 3 HOH A 37 2537 15 HOH HOH . C 3 HOH A 38 2538 27 HOH HOH . C 3 HOH A 39 2539 3 HOH HOH . C 3 HOH A 40 2540 25 HOH HOH . C 3 HOH A 41 2541 28 HOH HOH . C 3 HOH A 42 2542 33 HOH HOH . C 3 HOH A 43 2543 31 HOH HOH . C 3 HOH A 44 2544 13 HOH HOH . C 3 HOH A 45 2545 32 HOH HOH . C 3 HOH A 46 2546 1 HOH HOH . C 3 HOH A 47 2547 38 HOH HOH . C 3 HOH A 48 2548 18 HOH HOH . C 3 HOH A 49 2549 46 HOH HOH . C 3 HOH A 50 2550 10 HOH HOH . C 3 HOH A 51 2551 14 HOH HOH . C 3 HOH A 52 2552 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 6XQ . . . B 2 22.95 30.662 20.394 1 34.19 ? O1 6XQ 2401 A 1 HETATM 2 C C7 6XQ . . . B 2 20.187 31.865 24.014 1 33.78 ? C7 6XQ 2401 A 1 HETATM 3 O O2 6XQ . . . B 2 23.974 30.872 22.356 1 33.92 ? O2 6XQ 2401 A 1 HETATM 4 C C6 6XQ . . . B 2 22.961 30.723 21.702 1 34.12 ? C6 6XQ 2401 A 1 HETATM 5 C C1 6XQ . . . B 2 21.521 33.64 20.865 1 35.11 ? C1 6XQ 2401 A 1 HETATM 6 N N1 6XQ . . . B 2 19.189 31.337 32.579 1 33.03 ? N1 6XQ 2401 A 1 HETATM 7 C C5 6XQ . . . B 2 21.592 30.61 22.318 1 34.04 ? C5 6XQ 2401 A 1 HETATM 8 C C4 6XQ . . . B 2 21.129 31.981 22.831 1 34.23 ? C4 6XQ 2401 A 1 HETATM 9 C C3 6XQ . . . B 2 20.558 32.809 21.657 1 34.78 ? C3 6XQ 2401 A 1 HETATM 10 C C2 6XQ . . . B 2 20.555 34.301 21.792 1 35.11 ? C2 6XQ 2401 A 1 HETATM 11 O O3 6XQ . . . B 2 16.173 32.589 33.818 1 35.65 ? O3 6XQ 2401 A 1 HETATM 12 C C24 6XQ . . . B 2 17.285 33.065 33.936 1 35.18 ? C24 6XQ 2401 A 1 HETATM 13 N N2 6XQ . . . B 2 17.578 34.318 33.479 1 35.8 ? N2 6XQ 2401 A 1 HETATM 14 C C31 6XQ . . . B 2 16.904 35.476 34.083 1 36.62 ? C31 6XQ 2401 A 1 HETATM 15 C C32 6XQ . . . B 2 16.012 36.312 33.141 1 37.16 ? C32 6XQ 2401 A 1 HETATM 16 C C35 6XQ . . . B 2 14.905 36.964 33.962 1 37.33 ? C35 6XQ 2401 A 1 HETATM 17 C C34 6XQ . . . B 2 16.856 37.4 32.484 1 37.39 ? C34 6XQ 2401 A 1 HETATM 18 C C33 6XQ . . . B 2 15.374 35.451 32.051 1 37.01 ? C33 6XQ 2401 A 1 HETATM 19 C C25 6XQ . . . B 2 18.789 34.523 32.779 1 35.62 ? C25 6XQ 2401 A 1 HETATM 20 N N3 6XQ . . . B 2 18.619 34.59 31.45 1 35.59 ? N3 6XQ 2401 A 1 HETATM 21 C C29 6XQ . . . B 2 19.711 34.792 30.687 1 35.72 ? C29 6XQ 2401 A 1 HETATM 22 C C30 6XQ . . . B 2 19.491 34.86 29.205 1 35.53 ? C30 6XQ 2401 A 1 HETATM 23 C C28 6XQ . . . B 2 20.986 34.924 31.245 1 35.34 ? C28 6XQ 2401 A 1 HETATM 24 C C27 6XQ . . . B 2 21.133 34.853 32.619 1 35.31 ? C27 6XQ 2401 A 1 HETATM 25 C C26 6XQ . . . B 2 20.022 34.655 33.419 1 35.25 ? C26 6XQ 2401 A 1 HETATM 26 C C23 6XQ . . . B 2 18.363 32.289 34.641 1 34.32 ? C23 6XQ 2401 A 1 HETATM 27 C C22 6XQ . . . B 2 18.441 32.423 36.024 1 34.15 ? C22 6XQ 2401 A 1 HETATM 28 C C21 6XQ . . . B 2 19.406 31.751 36.749 1 33.29 ? C21 6XQ 2401 A 1 HETATM 29 C C20 6XQ . . . B 2 20.311 30.934 36.097 1 33.11 ? C20 6XQ 2401 A 1 HETATM 30 O O4 6XQ . . . B 2 21.184 30.354 36.979 1 33.36 ? O4 6XQ 2401 A 1 HETATM 31 C C36 6XQ . . . B 2 22.184 29.481 36.469 1 32.96 ? C36 6XQ 2401 A 1 HETATM 32 C C19 6XQ . . . B 2 20.265 30.774 34.718 1 33.14 ? C19 6XQ 2401 A 1 HETATM 33 C C18 6XQ . . . B 2 19.285 31.448 33.988 1 33.55 ? C18 6XQ 2401 A 1 HETATM 34 C C17 6XQ . . . B 2 18.069 30.581 32.018 1 33.14 ? C17 6XQ 2401 A 1 HETATM 35 C C16 6XQ . . . B 2 17.844 30.95 30.553 1 32.9 ? C16 6XQ 2401 A 1 HETATM 36 C C37 6XQ . . . B 2 20.425 31.038 31.859 1 33.18 ? C37 6XQ 2401 A 1 HETATM 37 C C38 6XQ . . . B 2 20.307 31.417 30.389 1 32.97 ? C38 6XQ 2401 A 1 HETATM 38 C C15 6XQ . . . B 2 19.119 30.697 29.739 1 32.9 ? C15 6XQ 2401 A 1 HETATM 39 C C14 6XQ . . . B 2 18.949 31.05 28.314 1 33.31 ? C14 6XQ 2401 A 1 HETATM 40 O O5 6XQ . . . B 2 20.135 31.012 27.597 1 33.59 ? O5 6XQ 2401 A 1 HETATM 41 C C9 6XQ . . . B 2 19.812 31.383 26.311 1 33.51 ? C9 6XQ 2401 A 1 HETATM 42 C C8 6XQ . . . B 2 20.693 31.477 25.255 1 33.62 ? C8 6XQ 2401 A 1 HETATM 43 C C13 6XQ . . . B 2 17.923 31.43 27.539 1 33.55 ? C13 6XQ 2401 A 1 HETATM 44 C C10 6XQ . . . B 2 18.456 31.651 26.218 1 33.51 ? C10 6XQ 2401 A 1 HETATM 45 C C11 6XQ . . . B 2 17.964 32.04 24.973 1 33.55 ? C11 6XQ 2401 A 1 HETATM 46 C C12 6XQ . . . B 2 18.821 32.144 23.889 1 33.8 ? C12 6XQ 2401 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 46 #