data_5KW4 # _model_server_result.job_id R3f16og6XW-tOb3q_bfulw _model_server_result.datetime_utc '2025-08-01 06:40:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kw4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5KW4 # _exptl.entry_id 5KW4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'L(+)-TARTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KW4 _cell.length_a 58.659 _cell.length_b 58.659 _cell.length_c 151.574 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KW4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 204 A CYS 204 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.012 ? disulf ? disulf2 A SG CYS 9 A CYS 9 1_555 A SG CYS 204 A CYS 204 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.008 ? disulf ? disulf3 A SG CYS 56 A CYS 56 1_555 A SG CYS 66 A CYS 66 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf4 A SG CYS 56 A CYS 56 1_555 A SG CYS 66 A CYS 66 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 A SG CYS 71 A CYS 71 1_555 A SG CYS 77 A CYS 77 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf6 A SG CYS 71 A CYS 71 1_555 A SG CYS 77 A CYS 77 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.987 ? disulf ? disulf7 A SG CYS 121 A CYS 121 1_555 A SG CYS 193 A CYS 193 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf8 A SG CYS 121 A CYS 121 1_555 A SG CYS 193 A CYS 193 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf9 A SG CYS 126 A CYS 126 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf10 A SG CYS 134 A CYS 134 1_555 A SG CYS 145 A CYS 145 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.082 ? disulf ? disulf11 A SG CYS 134 A CYS 134 1_555 A SG CYS 145 A CYS 145 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.051 ? disulf ? disulf12 A SG CYS 149 A CYS 149 1_555 A SG CYS 158 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf13 A SG CYS 159 A CYS 159 1_555 A SG CYS 164 A CYS 164 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.02 ? disulf ? disulf14 A SG CYS 159 A CYS 159 1_555 A SG CYS 164 A CYS 164 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'C4 H6 O6' _chem_comp.formula_weight 150.087 _chem_comp.id TLA _chem_comp.mon_nstd_flag . _chem_comp.name 'L(+)-TARTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 TLA doub 285 n n O11 C1 TLA sing 286 n n O11 H11 TLA sing 287 n n C1 C2 TLA sing 288 n n C2 O2 TLA sing 289 n n C2 C3 TLA sing 290 n n C2 H2 TLA sing 291 n n O2 HA TLA sing 292 n n C3 O3 TLA sing 293 n n C3 C4 TLA sing 294 n n C3 H3 TLA sing 295 n n O3 HB TLA sing 296 n n C4 O4 TLA doub 297 n n C4 O41 TLA sing 298 n n O41 H41 TLA sing 299 n n # _atom_sites.entry_id 5KW4 _atom_sites.fract_transf_matrix[1][1] 0.017048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TLA A 1 301 207 TLA TLA . C 3 HOH A 1 401 257 HOH HOH . C 3 HOH A 2 402 229 HOH HOH . C 3 HOH A 3 403 282 HOH HOH . C 3 HOH A 4 404 270 HOH HOH . C 3 HOH A 5 405 242 HOH HOH . C 3 HOH A 6 406 232 HOH HOH . C 3 HOH A 7 407 286 HOH HOH . C 3 HOH A 8 408 218 HOH HOH . C 3 HOH A 9 409 333 HOH HOH . C 3 HOH A 10 410 259 HOH HOH . C 3 HOH A 11 411 318 HOH HOH . C 3 HOH A 12 412 278 HOH HOH . C 3 HOH A 13 413 239 HOH HOH . C 3 HOH A 14 414 212 HOH HOH . C 3 HOH A 15 415 321 HOH HOH . C 3 HOH A 16 416 215 HOH HOH . C 3 HOH A 17 417 219 HOH HOH . C 3 HOH A 18 418 240 HOH HOH . C 3 HOH A 19 419 323 HOH HOH . C 3 HOH A 20 420 235 HOH HOH . C 3 HOH A 21 421 309 HOH HOH . C 3 HOH A 22 422 332 HOH HOH . C 3 HOH A 23 423 223 HOH HOH . C 3 HOH A 24 424 252 HOH HOH . C 3 HOH A 25 425 225 HOH HOH . C 3 HOH A 26 426 346 HOH HOH . C 3 HOH A 27 427 345 HOH HOH . C 3 HOH A 28 428 356 HOH HOH . C 3 HOH A 29 429 334 HOH HOH . C 3 HOH A 30 430 262 HOH HOH . C 3 HOH A 31 431 227 HOH HOH . C 3 HOH A 32 432 217 HOH HOH . C 3 HOH A 33 433 301 HOH HOH . C 3 HOH A 34 434 255 HOH HOH . C 3 HOH A 35 435 222 HOH HOH . C 3 HOH A 36 436 216 HOH HOH . C 3 HOH A 37 437 357 HOH HOH . C 3 HOH A 38 438 311 HOH HOH . C 3 HOH A 39 439 246 HOH HOH . C 3 HOH A 40 440 267 HOH HOH . C 3 HOH A 41 441 261 HOH HOH . C 3 HOH A 42 442 313 HOH HOH . C 3 HOH A 43 443 266 HOH HOH . C 3 HOH A 44 444 306 HOH HOH . C 3 HOH A 45 445 308 HOH HOH . C 3 HOH A 46 446 244 HOH HOH . C 3 HOH A 47 447 329 HOH HOH . C 3 HOH A 48 448 289 HOH HOH . C 3 HOH A 49 449 317 HOH HOH . C 3 HOH A 50 450 251 HOH HOH . C 3 HOH A 51 451 359 HOH HOH . C 3 HOH A 52 452 342 HOH HOH . C 3 HOH A 53 453 208 HOH HOH . C 3 HOH A 54 454 256 HOH HOH . C 3 HOH A 55 455 314 HOH HOH . C 3 HOH A 56 456 209 HOH HOH . C 3 HOH A 57 457 348 HOH HOH . C 3 HOH A 58 458 284 HOH HOH . C 3 HOH A 59 459 253 HOH HOH . C 3 HOH A 60 460 268 HOH HOH . C 3 HOH A 61 461 283 HOH HOH . C 3 HOH A 62 462 250 HOH HOH . C 3 HOH A 63 463 280 HOH HOH . C 3 HOH A 64 464 352 HOH HOH . C 3 HOH A 65 465 340 HOH HOH . C 3 HOH A 66 466 331 HOH HOH . C 3 HOH A 67 467 353 HOH HOH . C 3 HOH A 68 468 245 HOH HOH . C 3 HOH A 69 469 272 HOH HOH . C 3 HOH A 70 470 320 HOH HOH . C 3 HOH A 71 471 271 HOH HOH . C 3 HOH A 72 472 265 HOH HOH . C 3 HOH A 73 473 294 HOH HOH . C 3 HOH A 74 474 312 HOH HOH . C 3 HOH A 75 475 302 HOH HOH . C 3 HOH A 76 476 236 HOH HOH . C 3 HOH A 77 477 221 HOH HOH . C 3 HOH A 78 478 307 HOH HOH . C 3 HOH A 79 479 288 HOH HOH . C 3 HOH A 80 480 295 HOH HOH . C 3 HOH A 81 481 293 HOH HOH . C 3 HOH A 82 482 214 HOH HOH . C 3 HOH A 83 483 264 HOH HOH . C 3 HOH A 84 484 354 HOH HOH . C 3 HOH A 85 485 281 HOH HOH . C 3 HOH A 86 486 305 HOH HOH . C 3 HOH A 87 487 210 HOH HOH . C 3 HOH A 88 488 213 HOH HOH . C 3 HOH A 89 489 247 HOH HOH . C 3 HOH A 90 490 275 HOH HOH . C 3 HOH A 91 491 274 HOH HOH . C 3 HOH A 92 492 220 HOH HOH . C 3 HOH A 93 493 263 HOH HOH . C 3 HOH A 94 494 322 HOH HOH . C 3 HOH A 95 495 326 HOH HOH . C 3 HOH A 96 496 351 HOH HOH . C 3 HOH A 97 497 230 HOH HOH . C 3 HOH A 98 498 350 HOH HOH . C 3 HOH A 99 499 226 HOH HOH . C 3 HOH A 100 500 248 HOH HOH . C 3 HOH A 101 501 211 HOH HOH . C 3 HOH A 102 502 243 HOH HOH . C 3 HOH A 103 503 324 HOH HOH . C 3 HOH A 104 504 273 HOH HOH . C 3 HOH A 105 505 291 HOH HOH . C 3 HOH A 106 506 241 HOH HOH . C 3 HOH A 107 507 234 HOH HOH . C 3 HOH A 108 508 303 HOH HOH . C 3 HOH A 109 509 279 HOH HOH . C 3 HOH A 110 510 249 HOH HOH . C 3 HOH A 111 511 297 HOH HOH . C 3 HOH A 112 512 228 HOH HOH . C 3 HOH A 113 513 336 HOH HOH . C 3 HOH A 114 514 254 HOH HOH . C 3 HOH A 115 515 238 HOH HOH . C 3 HOH A 116 516 319 HOH HOH . C 3 HOH A 117 517 233 HOH HOH . C 3 HOH A 118 518 290 HOH HOH . C 3 HOH A 119 519 260 HOH HOH . C 3 HOH A 120 520 224 HOH HOH . C 3 HOH A 121 521 325 HOH HOH . C 3 HOH A 122 522 337 HOH HOH . C 3 HOH A 123 523 258 HOH HOH . C 3 HOH A 124 524 231 HOH HOH . C 3 HOH A 125 525 347 HOH HOH . C 3 HOH A 126 526 292 HOH HOH . C 3 HOH A 127 527 358 HOH HOH . C 3 HOH A 128 528 328 HOH HOH . C 3 HOH A 129 529 285 HOH HOH . C 3 HOH A 130 530 327 HOH HOH . C 3 HOH A 131 531 269 HOH HOH . C 3 HOH A 132 532 341 HOH HOH . C 3 HOH A 133 533 315 HOH HOH . C 3 HOH A 134 534 344 HOH HOH . C 3 HOH A 135 535 237 HOH HOH . C 3 HOH A 136 536 316 HOH HOH . C 3 HOH A 137 537 276 HOH HOH . C 3 HOH A 138 538 310 HOH HOH . C 3 HOH A 139 539 355 HOH HOH . C 3 HOH A 140 540 299 HOH HOH . C 3 HOH A 141 541 338 HOH HOH . C 3 HOH A 142 542 343 HOH HOH . C 3 HOH A 143 543 298 HOH HOH . C 3 HOH A 144 544 339 HOH HOH . C 3 HOH A 145 545 349 HOH HOH . C 3 HOH A 146 546 360 HOH HOH . C 3 HOH A 147 547 296 HOH HOH . C 3 HOH A 148 548 300 HOH HOH . C 3 HOH A 149 549 335 HOH HOH . C 3 HOH A 150 550 304 HOH HOH . C 3 HOH A 151 551 287 HOH HOH . C 3 HOH A 152 552 330 HOH HOH . C 3 HOH A 153 553 277 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TLA . . . B 2 12.371 20.254 11.385 1 15.62 ? O1 TLA 301 A 1 HETATM 2 O O11 TLA . . . B 2 11.806 18.89 13.074 1 14.72 ? O11 TLA 301 A 1 HETATM 3 C C1 TLA . . . B 2 12.582 19.315 12.163 1 14.83 ? C1 TLA 301 A 1 HETATM 4 C C2 TLA . . . B 2 13.925 18.612 12.017 1 16.33 ? C2 TLA 301 A 1 HETATM 5 O O2 TLA . . . B 2 13.9 17.404 12.792 1 18.07 ? O2 TLA 301 A 1 HETATM 6 C C3 TLA . . . B 2 15.006 19.569 12.529 1 19.8 ? C3 TLA 301 A 1 HETATM 7 O O3 TLA . . . B 2 14.743 19.965 13.908 1 18.35 ? O3 TLA 301 A 1 HETATM 8 C C4 TLA . . . B 2 16.373 18.909 12.37 1 24.78 ? C4 TLA 301 A 1 HETATM 9 O O4 TLA . . . B 2 16.804 18.774 11.221 1 23.53 ? O4 TLA 301 A 1 HETATM 10 O O41 TLA . . . B 2 17.022 18.54 13.379 1 22.95 ? O41 TLA 301 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #