data_5KWV
#
_model_server_result.job_id            cMUWE_IwlTpSr4frCnd-Pw 
_model_server_result.datetime_utc      '2024-10-19 13:29:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kwv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":300}' 
#
_entry.id    5KWV 
#
_exptl.entry_id    5KWV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KWV 
_cell.length_a            137.65 
_cell.length_b            137.65 
_cell.length_c            73.02 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KWV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     5KWV 
_atom_sites.fract_transf_matrix[1][1]    0.007265 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007265 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013695 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ANP A 1 300 300 ANP ANP . 
D 2 ANP B 1 300 300 ANP ANP . 
E 3 HOH A 1 401 121 HOH HOH . 
E 3 HOH A 2 402 90 HOH HOH . 
E 3 HOH A 3 403 58 HOH HOH . 
E 3 HOH A 4 404 60 HOH HOH . 
E 3 HOH A 5 405 120 HOH HOH . 
E 3 HOH A 6 406 128 HOH HOH . 
E 3 HOH A 7 407 77 HOH HOH . 
E 3 HOH A 8 408 116 HOH HOH . 
E 3 HOH A 9 409 148 HOH HOH . 
E 3 HOH A 10 410 54 HOH HOH . 
E 3 HOH A 11 411 36 HOH HOH . 
E 3 HOH A 12 412 44 HOH HOH . 
E 3 HOH A 13 413 130 HOH HOH . 
E 3 HOH A 14 414 64 HOH HOH . 
E 3 HOH A 15 415 99 HOH HOH . 
E 3 HOH A 16 416 142 HOH HOH . 
E 3 HOH A 17 417 52 HOH HOH . 
E 3 HOH A 18 418 97 HOH HOH . 
E 3 HOH A 19 419 72 HOH HOH . 
E 3 HOH A 20 420 89 HOH HOH . 
E 3 HOH A 21 421 50 HOH HOH . 
E 3 HOH A 22 422 67 HOH HOH . 
E 3 HOH A 23 423 39 HOH HOH . 
E 3 HOH A 24 424 51 HOH HOH . 
E 3 HOH A 25 425 38 HOH HOH . 
E 3 HOH A 26 426 87 HOH HOH . 
E 3 HOH A 27 427 42 HOH HOH . 
E 3 HOH A 28 428 123 HOH HOH . 
E 3 HOH A 29 429 59 HOH HOH . 
E 3 HOH A 30 430 117 HOH HOH . 
E 3 HOH A 31 431 119 HOH HOH . 
E 3 HOH A 32 432 125 HOH HOH . 
E 3 HOH A 33 433 100 HOH HOH . 
E 3 HOH A 34 434 75 HOH HOH . 
E 3 HOH A 35 435 45 HOH HOH . 
E 3 HOH A 36 436 41 HOH HOH . 
E 3 HOH A 37 437 129 HOH HOH . 
E 3 HOH A 38 438 37 HOH HOH . 
E 3 HOH A 39 439 65 HOH HOH . 
E 3 HOH A 40 440 95 HOH HOH . 
E 3 HOH A 41 441 98 HOH HOH . 
E 3 HOH A 42 442 76 HOH HOH . 
E 3 HOH A 43 443 56 HOH HOH . 
E 3 HOH A 44 444 53 HOH HOH . 
E 3 HOH A 45 445 143 HOH HOH . 
E 3 HOH A 46 446 114 HOH HOH . 
E 3 HOH A 47 447 48 HOH HOH . 
E 3 HOH A 48 448 127 HOH HOH . 
E 3 HOH A 49 449 157 HOH HOH . 
E 3 HOH A 50 450 40 HOH HOH . 
E 3 HOH A 51 451 68 HOH HOH . 
E 3 HOH A 52 452 102 HOH HOH . 
E 3 HOH A 53 453 66 HOH HOH . 
E 3 HOH A 54 454 154 HOH HOH . 
E 3 HOH A 55 455 47 HOH HOH . 
E 3 HOH A 56 456 46 HOH HOH . 
E 3 HOH A 57 457 109 HOH HOH . 
E 3 HOH A 58 458 91 HOH HOH . 
E 3 HOH A 59 459 43 HOH HOH . 
E 3 HOH A 60 460 55 HOH HOH . 
E 3 HOH A 61 461 88 HOH HOH . 
E 3 HOH A 62 462 110 HOH HOH . 
E 3 HOH A 63 463 49 HOH HOH . 
E 3 HOH A 64 464 13 HOH HOH . 
E 3 HOH A 65 465 63 HOH HOH . 
E 3 HOH A 66 466 71 HOH HOH . 
E 3 HOH A 67 467 62 HOH HOH . 
E 3 HOH A 68 468 144 HOH HOH . 
E 3 HOH A 69 469 145 HOH HOH . 
E 3 HOH A 70 470 57 HOH HOH . 
E 3 HOH A 71 471 156 HOH HOH . 
E 3 HOH A 72 472 94 HOH HOH . 
E 3 HOH A 73 473 96 HOH HOH . 
E 3 HOH A 74 474 69 HOH HOH . 
E 3 HOH A 75 475 79 HOH HOH . 
E 3 HOH A 76 476 126 HOH HOH . 
E 3 HOH A 77 477 61 HOH HOH . 
E 3 HOH A 78 478 118 HOH HOH . 
E 3 HOH A 79 479 70 HOH HOH . 
E 3 HOH A 80 480 146 HOH HOH . 
E 3 HOH A 81 481 23 HOH HOH . 
E 3 HOH A 82 482 122 HOH HOH . 
E 3 HOH A 83 483 153 HOH HOH . 
E 3 HOH A 84 484 81 HOH HOH . 
E 3 HOH A 85 485 82 HOH HOH . 
E 3 HOH A 86 486 150 HOH HOH . 
E 3 HOH A 87 487 73 HOH HOH . 
E 3 HOH A 88 488 155 HOH HOH . 
E 3 HOH A 89 489 78 HOH HOH . 
E 3 HOH A 90 490 147 HOH HOH . 
E 3 HOH A 91 491 151 HOH HOH . 
E 3 HOH A 92 492 74 HOH HOH . 
E 3 HOH A 93 493 80 HOH HOH . 
E 3 HOH A 94 494 101 HOH HOH . 
F 3 HOH B 1 401 133 HOH HOH . 
F 3 HOH B 2 402 139 HOH HOH . 
F 3 HOH B 3 403 84 HOH HOH . 
F 3 HOH B 4 404 32 HOH HOH . 
F 3 HOH B 5 405 113 HOH HOH . 
F 3 HOH B 6 406 27 HOH HOH . 
F 3 HOH B 7 407 140 HOH HOH . 
F 3 HOH B 8 408 33 HOH HOH . 
F 3 HOH B 9 409 12 HOH HOH . 
F 3 HOH B 10 410 137 HOH HOH . 
F 3 HOH B 11 411 16 HOH HOH . 
F 3 HOH B 12 412 111 HOH HOH . 
F 3 HOH B 13 413 7 HOH HOH . 
F 3 HOH B 14 414 21 HOH HOH . 
F 3 HOH B 15 415 30 HOH HOH . 
F 3 HOH B 16 416 5 HOH HOH . 
F 3 HOH B 17 417 11 HOH HOH . 
F 3 HOH B 18 418 107 HOH HOH . 
F 3 HOH B 19 419 105 HOH HOH . 
F 3 HOH B 20 420 1 HOH HOH . 
F 3 HOH B 21 421 25 HOH HOH . 
F 3 HOH B 22 422 131 HOH HOH . 
F 3 HOH B 23 423 8 HOH HOH . 
F 3 HOH B 24 424 31 HOH HOH . 
F 3 HOH B 25 425 103 HOH HOH . 
F 3 HOH B 26 426 3 HOH HOH . 
F 3 HOH B 27 427 35 HOH HOH . 
F 3 HOH B 28 428 136 HOH HOH . 
F 3 HOH B 29 429 6 HOH HOH . 
F 3 HOH B 30 430 106 HOH HOH . 
F 3 HOH B 31 431 135 HOH HOH . 
F 3 HOH B 32 432 18 HOH HOH . 
F 3 HOH B 33 433 17 HOH HOH . 
F 3 HOH B 34 434 22 HOH HOH . 
F 3 HOH B 35 435 83 HOH HOH . 
F 3 HOH B 36 436 29 HOH HOH . 
F 3 HOH B 37 437 2 HOH HOH . 
F 3 HOH B 38 438 20 HOH HOH . 
F 3 HOH B 39 439 141 HOH HOH . 
F 3 HOH B 40 440 112 HOH HOH . 
F 3 HOH B 41 441 115 HOH HOH . 
F 3 HOH B 42 442 104 HOH HOH . 
F 3 HOH B 43 443 15 HOH HOH . 
F 3 HOH B 44 444 134 HOH HOH . 
F 3 HOH B 45 445 14 HOH HOH . 
F 3 HOH B 46 446 28 HOH HOH . 
F 3 HOH B 47 447 26 HOH HOH . 
F 3 HOH B 48 448 108 HOH HOH . 
F 3 HOH B 49 449 34 HOH HOH . 
F 3 HOH B 50 450 132 HOH HOH . 
F 3 HOH B 51 451 138 HOH HOH . 
F 3 HOH B 52 452 9 HOH HOH . 
F 3 HOH B 53 453 124 HOH HOH . 
F 3 HOH B 54 454 4 HOH HOH . 
F 3 HOH B 55 455 149 HOH HOH . 
F 3 HOH B 56 456 24 HOH HOH . 
F 3 HOH B 57 457 19 HOH HOH . 
F 3 HOH B 58 458 86 HOH HOH . 
F 3 HOH B 59 459 92 HOH HOH . 
F 3 HOH B 60 460 85 HOH HOH . 
F 3 HOH B 61 461 93 HOH HOH . 
F 3 HOH B 62 462 10 HOH HOH . 
F 3 HOH B 63 463 152 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . D 2 11.601 97.373 17.663 0.93 157.45 ? PG ANP 300 B 1 
HETATM 2 O O1G ANP . . . D 2 11.054 96.526 16.555 0.93 159.06 ? O1G ANP 300 B 1 
HETATM 3 O O2G ANP . . . D 2 10.748 98.694 17.799 0.93 157.6 ? O2G ANP 300 B 1 
HETATM 4 O O3G ANP . . . D 2 13.103 97.757 17.341 0.93 158.76 ? O3G ANP 300 B 1 
HETATM 5 P PB ANP . . . D 2 10.863 94.997 18.917 0.93 144.36 ? PB ANP 300 B 1 
HETATM 6 O O1B ANP . . . D 2 11.738 94.17 17.931 0.93 144.35 ? O1B ANP 300 B 1 
HETATM 7 O O2B ANP . . . D 2 9.492 95.118 18.326 0.93 135.24 ? O2B ANP 300 B 1 
HETATM 8 N N3B ANP . . . D 2 11.546 96.517 19.124 0.93 151.49 ? N3B ANP 300 B 1 
HETATM 9 P PA ANP . . . D 2 11.952 94.428 21.431 0.93 143.29 ? PA ANP 300 B 1 
HETATM 10 O O1A ANP . . . D 2 12.931 95.498 20.937 0.93 142.12 ? O1A ANP 300 B 1 
HETATM 11 O O2A ANP . . . D 2 11.398 94.673 22.789 0.93 142.65 ? O2A ANP 300 B 1 
HETATM 12 O O3A ANP . . . D 2 10.796 94.285 20.314 0.93 145.75 ? O3A ANP 300 B 1 
HETATM 13 O O5' ANP . . . D 2 12.636 93.008 21.505 0.93 136.14 ? O5' ANP 300 B 1 
HETATM 14 C C5' ANP . . . D 2 13.306 92.471 20.357 0.93 130.36 ? C5' ANP 300 B 1 
HETATM 15 C C4' ANP . . . D 2 12.649 91.172 19.971 0.93 123.43 ? C4' ANP 300 B 1 
HETATM 16 O O4' ANP . . . D 2 11.417 91.434 19.278 0.93 120.22 ? O4' ANP 300 B 1 
HETATM 17 C C3' ANP . . . D 2 13.456 90.316 19.002 0.93 118.39 ? C3' ANP 300 B 1 
HETATM 18 O O3' ANP . . . D 2 14.301 89.41 19.705 0.93 106.57 ? O3' ANP 300 B 1 
HETATM 19 C C2' ANP . . . D 2 12.381 89.541 18.228 0.93 123.22 ? C2' ANP 300 B 1 
HETATM 20 O O2' ANP . . . D 2 12.36 88.217 18.74 0.93 128.33 ? O2' ANP 300 B 1 
HETATM 21 C C1' ANP . . . D 2 11.069 90.262 18.572 0.93 117.96 ? C1' ANP 300 B 1 
HETATM 22 N N9 ANP . . . D 2 10.241 90.63 17.418 0.93 110.84 ? N9 ANP 300 B 1 
HETATM 23 C C8 ANP . . . D 2 10.008 91.896 16.945 0.93 106 ? C8 ANP 300 B 1 
HETATM 24 N N7 ANP . . . D 2 9.218 91.94 15.899 0.93 104.7 ? N7 ANP 300 B 1 
HETATM 25 C C5 ANP . . . D 2 8.904 90.607 15.667 0.93 102.87 ? C5 ANP 300 B 1 
HETATM 26 C C6 ANP . . . D 2 8.098 89.976 14.697 0.93 93.19 ? C6 ANP 300 B 1 
HETATM 27 N N6 ANP . . . D 2 7.437 90.63 13.738 0.93 86.87 ? N6 ANP 300 B 1 
HETATM 28 N N1 ANP . . . D 2 7.993 88.627 14.749 0.93 89.2 ? N1 ANP 300 B 1 
HETATM 29 C C2 ANP . . . D 2 8.653 87.966 15.703 0.93 91.78 ? C2 ANP 300 B 1 
HETATM 30 N N3 ANP . . . D 2 9.439 88.452 16.668 0.93 100.6 ? N3 ANP 300 B 1 
HETATM 31 C C4 ANP . . . D 2 9.524 89.789 16.596 0.93 106.19 ? C4 ANP 300 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#