data_5KWW # _model_server_result.job_id qYkf1UgmwdKqzwrShYY6Cg _model_server_result.datetime_utc '2024-10-18 04:28:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kww # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":613}' # _entry.id 5KWW # _exptl.entry_id 5KWW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 500.922 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[[5-chloranyl-1-(3-methylsulfonylpropyl)indol-2-yl]methyl]-1-[2,2,2-tris(fluoranyl)ethyl]imidazo[4,5-c]pyridin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KWW _cell.length_a 169.99 _cell.length_b 169.99 _cell.length_c 169.99 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KWW _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 F CYS 37 1_555 A SG CYS 439 F CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 155 F CYS 155 1_555 A SG CYS 290 F CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 313 F CYS 313 1_555 A SG CYS 343 F CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 A SG CYS 322 F CYS 322 1_555 A SG CYS 333 F CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 A SG CYS 358 F CYS 358 1_555 A SG CYS 367 F CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 A SG CYS 382 F CYS 382 1_555 A SG CYS 393 F CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 A SG CYS 416 F CYS 416 1_555 A SG CYS 422 F CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 500 F ASN 500 1_555 B C1 NAG . F NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C21 H20 Cl F3 N4 O3 S' _chem_comp.formula_weight 500.922 _chem_comp.id 6YA _chem_comp.mon_nstd_flag . _chem_comp.name 3-[[5-chloranyl-1-(3-methylsulfonylpropyl)indol-2-yl]methyl]-1-[2,2,2-tris(fluoranyl)ethyl]imidazo[4,5-c]pyridin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F32 C30 6YA sing 1 n n F33 C30 6YA sing 2 n n C30 C29 6YA sing 3 n n C30 F31 6YA sing 4 n n C29 N22 6YA sing 5 n n C28 C27 6YA doub 6 n y C28 C23 6YA sing 7 n y O16 S14 6YA doub 8 n n C27 N26 6YA sing 9 n y N22 C23 6YA sing 10 n n N22 C20 6YA sing 11 n n C23 C24 6YA doub 12 n y C17 S14 6YA sing 13 n n S14 O15 6YA doub 14 n n S14 C13 6YA sing 15 n n N26 C25 6YA doub 16 n y C20 O21 6YA doub 17 n n C20 N19 6YA sing 18 n n C24 C25 6YA sing 19 n y C24 N19 6YA sing 20 n n N19 C18 6YA sing 21 n n C13 C12 6YA sing 22 n n C12 C11 6YA sing 23 n n C11 N03 6YA sing 24 n n C18 C02 6YA sing 25 n n N03 C02 6YA sing 26 n y N03 C04 6YA sing 27 n y C02 C01 6YA doub 28 n y C04 C10 6YA doub 29 n y C04 C05 6YA sing 30 n y C01 C05 6YA sing 31 n y C10 C09 6YA sing 32 n y C05 C06 6YA doub 33 n y C09 C07 6YA doub 34 n y C06 C07 6YA sing 35 n y C07 CL8 6YA sing 36 n n C10 H1 6YA sing 37 n n C13 H2 6YA sing 38 n n C13 H3 6YA sing 39 n n C17 H4 6YA sing 40 n n C17 H5 6YA sing 41 n n C17 H6 6YA sing 42 n n C28 H7 6YA sing 43 n n C01 H8 6YA sing 44 n n C06 H9 6YA sing 45 n n C09 H10 6YA sing 46 n n C11 H11 6YA sing 47 n n C11 H12 6YA sing 48 n n C12 H13 6YA sing 49 n n C12 H14 6YA sing 50 n n C18 H15 6YA sing 51 n n C18 H16 6YA sing 52 n n C25 H17 6YA sing 53 n n C27 H18 6YA sing 54 n n C29 H19 6YA sing 55 n n C29 H20 6YA sing 56 n n # _atom_sites.entry_id 5KWW _atom_sites.fract_transf_matrix[1][1] 0.005883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG F 1 601 800 NAG NAG . C 3 NHE F 1 602 1 NHE NHE . D 4 SO4 F 1 603 1 SO4 SO4 . E 4 SO4 F 1 604 2 SO4 SO4 . F 4 SO4 F 1 605 3 SO4 SO4 . G 4 SO4 F 1 606 4 SO4 SO4 . H 4 SO4 F 1 607 5 SO4 SO4 . I 4 SO4 F 1 608 6 SO4 SO4 . J 4 SO4 F 1 609 7 SO4 SO4 . K 4 SO4 F 1 610 8 SO4 SO4 . L 4 SO4 F 1 611 9 SO4 SO4 . M 4 SO4 F 1 612 10 SO4 SO4 . N 5 6YA F 1 613 1 6YA LIG . O 6 HOH F 1 701 73 HOH HOH . O 6 HOH F 2 702 19 HOH HOH . O 6 HOH F 3 703 66 HOH HOH . O 6 HOH F 4 704 116 HOH HOH . O 6 HOH F 5 705 31 HOH HOH . O 6 HOH F 6 706 43 HOH HOH . O 6 HOH F 7 707 68 HOH HOH . O 6 HOH F 8 708 114 HOH HOH . O 6 HOH F 9 709 13 HOH HOH . O 6 HOH F 10 710 5 HOH HOH . O 6 HOH F 11 711 29 HOH HOH . O 6 HOH F 12 712 46 HOH HOH . O 6 HOH F 13 713 124 HOH HOH . O 6 HOH F 14 714 69 HOH HOH . O 6 HOH F 15 715 14 HOH HOH . O 6 HOH F 16 716 96 HOH HOH . O 6 HOH F 17 717 119 HOH HOH . O 6 HOH F 18 718 48 HOH HOH . O 6 HOH F 19 719 1 HOH HOH . O 6 HOH F 20 720 112 HOH HOH . O 6 HOH F 21 721 117 HOH HOH . O 6 HOH F 22 722 63 HOH HOH . O 6 HOH F 23 723 64 HOH HOH . O 6 HOH F 24 724 128 HOH HOH . O 6 HOH F 25 725 45 HOH HOH . O 6 HOH F 26 726 115 HOH HOH . O 6 HOH F 27 727 93 HOH HOH . O 6 HOH F 28 728 25 HOH HOH . O 6 HOH F 29 729 35 HOH HOH . O 6 HOH F 30 730 39 HOH HOH . O 6 HOH F 31 731 94 HOH HOH . O 6 HOH F 32 732 98 HOH HOH . O 6 HOH F 33 733 109 HOH HOH . O 6 HOH F 34 734 58 HOH HOH . O 6 HOH F 35 735 74 HOH HOH . O 6 HOH F 36 736 10 HOH HOH . O 6 HOH F 37 737 8 HOH HOH . O 6 HOH F 38 738 120 HOH HOH . O 6 HOH F 39 739 26 HOH HOH . O 6 HOH F 40 740 97 HOH HOH . O 6 HOH F 41 741 101 HOH HOH . O 6 HOH F 42 742 76 HOH HOH . O 6 HOH F 43 743 86 HOH HOH . O 6 HOH F 44 744 113 HOH HOH . O 6 HOH F 45 745 27 HOH HOH . O 6 HOH F 46 746 7 HOH HOH . O 6 HOH F 47 747 6 HOH HOH . O 6 HOH F 48 748 21 HOH HOH . O 6 HOH F 49 749 118 HOH HOH . O 6 HOH F 50 750 40 HOH HOH . O 6 HOH F 51 751 125 HOH HOH . O 6 HOH F 52 752 20 HOH HOH . O 6 HOH F 53 753 24 HOH HOH . O 6 HOH F 54 754 16 HOH HOH . O 6 HOH F 55 755 88 HOH HOH . O 6 HOH F 56 756 44 HOH HOH . O 6 HOH F 57 757 47 HOH HOH . O 6 HOH F 58 758 89 HOH HOH . O 6 HOH F 59 759 105 HOH HOH . O 6 HOH F 60 760 3 HOH HOH . O 6 HOH F 61 761 70 HOH HOH . O 6 HOH F 62 762 22 HOH HOH . O 6 HOH F 63 763 11 HOH HOH . O 6 HOH F 64 764 50 HOH HOH . O 6 HOH F 65 765 9 HOH HOH . O 6 HOH F 66 766 60 HOH HOH . O 6 HOH F 67 767 95 HOH HOH . O 6 HOH F 68 768 77 HOH HOH . O 6 HOH F 69 769 82 HOH HOH . O 6 HOH F 70 770 121 HOH HOH . O 6 HOH F 71 771 99 HOH HOH . O 6 HOH F 72 772 92 HOH HOH . O 6 HOH F 73 773 104 HOH HOH . O 6 HOH F 74 774 4 HOH HOH . O 6 HOH F 75 775 134 HOH HOH . O 6 HOH F 76 776 15 HOH HOH . O 6 HOH F 77 777 34 HOH HOH . O 6 HOH F 78 778 62 HOH HOH . O 6 HOH F 79 779 18 HOH HOH . O 6 HOH F 80 780 42 HOH HOH . O 6 HOH F 81 781 17 HOH HOH . O 6 HOH F 82 782 41 HOH HOH . O 6 HOH F 83 783 36 HOH HOH . O 6 HOH F 84 784 2 HOH HOH . O 6 HOH F 85 785 37 HOH HOH . O 6 HOH F 86 786 100 HOH HOH . O 6 HOH F 87 787 103 HOH HOH . O 6 HOH F 88 788 33 HOH HOH . O 6 HOH F 89 789 85 HOH HOH . O 6 HOH F 90 790 91 HOH HOH . O 6 HOH F 91 791 87 HOH HOH . O 6 HOH F 92 792 53 HOH HOH . O 6 HOH F 93 793 32 HOH HOH . O 6 HOH F 94 794 59 HOH HOH . O 6 HOH F 95 795 75 HOH HOH . O 6 HOH F 96 796 30 HOH HOH . O 6 HOH F 97 797 123 HOH HOH . O 6 HOH F 98 798 71 HOH HOH . O 6 HOH F 99 799 49 HOH HOH . O 6 HOH F 100 800 133 HOH HOH . O 6 HOH F 101 801 132 HOH HOH . O 6 HOH F 102 802 122 HOH HOH . O 6 HOH F 103 803 108 HOH HOH . O 6 HOH F 104 804 83 HOH HOH . O 6 HOH F 105 805 79 HOH HOH . O 6 HOH F 106 806 54 HOH HOH . O 6 HOH F 107 807 80 HOH HOH . O 6 HOH F 108 808 57 HOH HOH . O 6 HOH F 109 809 110 HOH HOH . O 6 HOH F 110 810 23 HOH HOH . O 6 HOH F 111 811 55 HOH HOH . O 6 HOH F 112 812 28 HOH HOH . O 6 HOH F 113 813 67 HOH HOH . O 6 HOH F 114 814 51 HOH HOH . O 6 HOH F 115 815 111 HOH HOH . O 6 HOH F 116 816 102 HOH HOH . O 6 HOH F 117 817 38 HOH HOH . O 6 HOH F 118 818 106 HOH HOH . O 6 HOH F 119 819 81 HOH HOH . O 6 HOH F 120 820 131 HOH HOH . O 6 HOH F 121 821 56 HOH HOH . O 6 HOH F 122 822 65 HOH HOH . O 6 HOH F 123 823 130 HOH HOH . O 6 HOH F 124 824 52 HOH HOH . O 6 HOH F 125 825 127 HOH HOH . O 6 HOH F 126 826 129 HOH HOH . O 6 HOH F 127 827 78 HOH HOH . O 6 HOH F 128 828 107 HOH HOH . O 6 HOH F 129 829 84 HOH HOH . O 6 HOH F 130 830 61 HOH HOH . O 6 HOH F 131 831 90 HOH HOH . O 6 HOH F 132 832 12 HOH HOH . O 6 HOH F 133 833 72 HOH HOH . O 6 HOH F 134 834 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 6YA . . . N 5 22.1 16.748 22.515 0.33 38.32 ? C10 6YA 613 F 1 HETATM 2 C C13 6YA . . . N 5 19.201 15.73 19.277 0.33 38.35 ? C13 6YA 613 F 1 HETATM 3 C C17 6YA . . . N 5 18.283 13.813 17.288 0.33 39.68 ? C17 6YA 613 F 1 HETATM 4 C C20 6YA . . . N 5 19.014 20.034 18.31 0.33 38.33 ? C20 6YA 613 F 1 HETATM 5 C C24 6YA . . . N 5 20.954 21.252 18.588 0.33 38.47 ? C24 6YA 613 F 1 HETATM 6 C C28 6YA . . . N 5 21.926 21.392 16.333 0.33 38.69 ? C28 6YA 613 F 1 HETATM 7 C C01 6YA . . . N 5 21.629 20.371 22.255 0.33 38.46 ? C01 6YA 613 F 1 HETATM 8 C C02 6YA . . . N 5 20.571 19.936 21.439 0.33 37.53 ? C02 6YA 613 F 1 HETATM 9 N N03 6YA . . . N 5 20.602 18.561 21.404 0.33 38.96 ? N03 6YA 613 F 1 HETATM 10 C C04 6YA . . . N 5 21.657 18.078 22.206 0.33 36.93 ? C04 6YA 613 F 1 HETATM 11 C C05 6YA . . . N 5 22.331 19.18 22.76 0.33 37.81 ? C05 6YA 613 F 1 HETATM 12 C C06 6YA . . . N 5 23.459 18.982 23.62 0.33 37.71 ? C06 6YA 613 F 1 HETATM 13 C C07 6YA . . . N 5 23.899 17.654 23.916 0.33 38.4 ? C07 6YA 613 F 1 HETATM 14 CL CL8 6YA . . . N 5 25.265 17.381 24.957 0.33 32.48 ? CL8 6YA 613 F 1 HETATM 15 C C09 6YA . . . N 5 23.22 16.554 23.363 0.33 38.24 ? C09 6YA 613 F 1 HETATM 16 C C11 6YA . . . N 5 19.632 17.747 20.656 0.33 38.53 ? C11 6YA 613 F 1 HETATM 17 C C12 6YA . . . N 5 20.236 16.836 19.574 0.33 38.31 ? C12 6YA 613 F 1 HETATM 18 S S14 6YA . . . N 5 19.576 14.894 17.725 0.33 40.34 ? S14 6YA 613 F 1 HETATM 19 O O15 6YA . . . N 5 20.837 14.187 17.805 0.33 40.15 ? O15 6YA 613 F 1 HETATM 20 O O16 6YA . . . N 5 19.848 15.815 16.691 0.33 40.65 ? O16 6YA 613 F 1 HETATM 21 C C18 6YA . . . N 5 19.572 20.835 20.698 0.33 39.38 ? C18 6YA 613 F 1 HETATM 22 N N19 6YA . . . N 5 19.826 20.715 19.263 0.33 38.06 ? N19 6YA 613 F 1 HETATM 23 O O21 6YA . . . N 5 17.953 19.444 18.545 0.33 37.85 ? O21 6YA 613 F 1 HETATM 24 N N22 6YA . . . N 5 19.633 20.162 17.047 0.33 38.57 ? N22 6YA 613 F 1 HETATM 25 C C23 6YA . . . N 5 20.841 20.915 17.226 0.33 38.59 ? C23 6YA 613 F 1 HETATM 26 C C25 6YA . . . N 5 22.064 22.007 19.043 0.33 38.17 ? C25 6YA 613 F 1 HETATM 27 N N26 6YA . . . N 5 23.032 22.419 18.167 0.33 40.08 ? N26 6YA 613 F 1 HETATM 28 C C27 6YA . . . N 5 22.98 22.128 16.853 0.33 37.56 ? C27 6YA 613 F 1 HETATM 29 C C29 6YA . . . N 5 19.142 19.606 15.809 0.33 38.93 ? C29 6YA 613 F 1 HETATM 30 C C30 6YA . . . N 5 17.941 20.381 15.236 0.33 39.76 ? C30 6YA 613 F 1 HETATM 31 F F31 6YA . . . N 5 17.029 20.705 16.23 0.33 40.34 ? F31 6YA 613 F 1 HETATM 32 F F32 6YA . . . N 5 17.34 19.602 14.335 0.33 40.1 ? F32 6YA 613 F 1 HETATM 33 F F33 6YA . . . N 5 18.365 21.503 14.646 0.33 40 ? F33 6YA 613 F 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #