data_5KWY
#
_model_server_result.job_id            8grWK9e-749PEWoUj-iweQ 
_model_server_result.datetime_utc      '2024-11-16 02:42:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kwy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":201}' 
#
_entry.id    5KWY 
#
_exptl.entry_id    5KWY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KWY 
_cell.length_a            98.956 
_cell.length_b            109.686 
_cell.length_c            154.56 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KWY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 95 A CYS 468 1_555 A SG CYS 106 A CYS 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 143 A CYS 516 1_555 A SG CYS 160 A CYS 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 B SG CYS 95 B CYS 468 1_555 B SG CYS 106 B CYS 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 B SG CYS 143 B CYS 516 1_555 B SG CYS 160 B CYS 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 C SG CYS 8 C CYS 27 1_555 C SG CYS 121 C CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf6 C SG CYS 23 C CYS 42 1_555 C SG CYS 28 C CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf7 C SG CYS 74 C CYS 93 1_555 C SG CYS 80 C CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 D SG CYS 8 D CYS 27 1_555 D SG CYS 121 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf9 D SG CYS 23 D CYS 42 1_555 D SG CYS 28 D CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf10 D SG CYS 74 D CYS 93 1_555 D SG CYS 80 D CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 C ND2 ASN 39 C ASN 58 1_555 E C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale2 C ND2 ASN 116 C ASN 135 1_555 F C1 NAG . C NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale3 D ND2 ASN 39 D ASN 58 1_555 H C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale4 D ND2 ASN 116 D ASN 135 1_555 I C1 NAG . D NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 318 n n 
C1 O1 NAG sing 319 n n 
C1 O5 NAG sing 320 n n 
C1 H1 NAG sing 321 n n 
C2 C3 NAG sing 322 n n 
C2 N2 NAG sing 323 n n 
C2 H2 NAG sing 324 n n 
C3 C4 NAG sing 325 n n 
C3 O3 NAG sing 326 n n 
C3 H3 NAG sing 327 n n 
C4 C5 NAG sing 328 n n 
C4 O4 NAG sing 329 n n 
C4 H4 NAG sing 330 n n 
C5 C6 NAG sing 331 n n 
C5 O5 NAG sing 332 n n 
C5 H5 NAG sing 333 n n 
C6 O6 NAG sing 334 n n 
C6 H61 NAG sing 335 n n 
C6 H62 NAG sing 336 n n 
C7 C8 NAG sing 337 n n 
C7 N2 NAG sing 338 n n 
C7 O7 NAG doub 339 n n 
C8 H81 NAG sing 340 n n 
C8 H82 NAG sing 341 n n 
C8 H83 NAG sing 342 n n 
N2 HN2 NAG sing 343 n n 
O1 HO1 NAG sing 344 n n 
O3 HO3 NAG sing 345 n n 
O4 HO4 NAG sing 346 n n 
O6 HO6 NAG sing 347 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5KWY 
_atom_sites.fract_transf_matrix[1][1]    0.010106 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009117 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00647 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG C 1 201 1 NAG NAG . 
F 3 NAG C 1 202 2 NAG NAG . 
G 4 C3S C 1 203 1 C3S C3S . 
H 3 NAG D 1 201 3 NAG NAG . 
I 3 NAG D 1 202 4 NAG NAG . 
J 4 C3S D 1 203 2 C3S C3S . 
K 5 HOH A 1 701 1 HOH HOH . 
K 5 HOH A 2 702 75 HOH HOH . 
K 5 HOH A 3 703 8 HOH HOH . 
K 5 HOH A 4 704 22 HOH HOH . 
K 5 HOH A 5 705 36 HOH HOH . 
K 5 HOH A 6 706 23 HOH HOH . 
K 5 HOH A 7 707 24 HOH HOH . 
K 5 HOH A 8 708 37 HOH HOH . 
K 5 HOH A 9 709 58 HOH HOH . 
K 5 HOH A 10 710 48 HOH HOH . 
K 5 HOH A 11 711 31 HOH HOH . 
K 5 HOH A 12 712 10 HOH HOH . 
K 5 HOH A 13 713 54 HOH HOH . 
K 5 HOH A 14 714 40 HOH HOH . 
K 5 HOH A 15 715 2 HOH HOH . 
K 5 HOH A 16 716 89 HOH HOH . 
K 5 HOH A 17 717 79 HOH HOH . 
K 5 HOH A 18 718 26 HOH HOH . 
K 5 HOH A 19 719 42 HOH HOH . 
K 5 HOH A 20 720 7 HOH HOH . 
K 5 HOH A 21 721 76 HOH HOH . 
K 5 HOH A 22 722 18 HOH HOH . 
K 5 HOH A 23 723 68 HOH HOH . 
K 5 HOH A 24 724 59 HOH HOH . 
K 5 HOH A 25 725 82 HOH HOH . 
K 5 HOH A 26 726 87 HOH HOH . 
K 5 HOH A 27 727 73 HOH HOH . 
K 5 HOH A 28 728 98 HOH HOH . 
K 5 HOH A 29 729 90 HOH HOH . 
K 5 HOH A 30 730 91 HOH HOH . 
L 5 HOH B 1 701 65 HOH HOH . 
L 5 HOH B 2 702 15 HOH HOH . 
L 5 HOH B 3 703 14 HOH HOH . 
L 5 HOH B 4 704 99 HOH HOH . 
L 5 HOH B 5 705 4 HOH HOH . 
L 5 HOH B 6 706 39 HOH HOH . 
L 5 HOH B 7 707 12 HOH HOH . 
L 5 HOH B 8 708 11 HOH HOH . 
L 5 HOH B 9 709 32 HOH HOH . 
L 5 HOH B 10 710 27 HOH HOH . 
L 5 HOH B 11 711 25 HOH HOH . 
L 5 HOH B 12 712 102 HOH HOH . 
L 5 HOH B 13 713 105 HOH HOH . 
L 5 HOH B 14 714 96 HOH HOH . 
L 5 HOH B 15 715 3 HOH HOH . 
L 5 HOH B 16 716 28 HOH HOH . 
L 5 HOH B 17 717 13 HOH HOH . 
L 5 HOH B 18 718 9 HOH HOH . 
L 5 HOH B 19 719 69 HOH HOH . 
L 5 HOH B 20 720 17 HOH HOH . 
L 5 HOH B 21 721 5 HOH HOH . 
L 5 HOH B 22 722 64 HOH HOH . 
L 5 HOH B 23 723 19 HOH HOH . 
L 5 HOH B 24 724 29 HOH HOH . 
L 5 HOH B 25 725 62 HOH HOH . 
L 5 HOH B 26 726 97 HOH HOH . 
L 5 HOH B 27 727 53 HOH HOH . 
L 5 HOH B 28 728 20 HOH HOH . 
L 5 HOH B 29 729 71 HOH HOH . 
L 5 HOH B 30 730 34 HOH HOH . 
L 5 HOH B 31 731 66 HOH HOH . 
L 5 HOH B 32 732 85 HOH HOH . 
L 5 HOH B 33 733 100 HOH HOH . 
L 5 HOH B 34 734 78 HOH HOH . 
L 5 HOH B 35 735 33 HOH HOH . 
L 5 HOH B 36 736 67 HOH HOH . 
L 5 HOH B 37 737 104 HOH HOH . 
L 5 HOH B 38 738 101 HOH HOH . 
L 5 HOH B 39 739 16 HOH HOH . 
L 5 HOH B 40 740 103 HOH HOH . 
M 5 HOH C 1 301 95 HOH HOH . 
M 5 HOH C 2 302 83 HOH HOH . 
M 5 HOH C 3 303 77 HOH HOH . 
M 5 HOH C 4 304 46 HOH HOH . 
M 5 HOH C 5 305 47 HOH HOH . 
M 5 HOH C 6 306 30 HOH HOH . 
M 5 HOH C 7 307 21 HOH HOH . 
M 5 HOH C 8 308 80 HOH HOH . 
M 5 HOH C 9 309 6 HOH HOH . 
M 5 HOH C 10 310 61 HOH HOH . 
M 5 HOH C 11 311 70 HOH HOH . 
M 5 HOH C 12 312 63 HOH HOH . 
M 5 HOH C 13 313 93 HOH HOH . 
M 5 HOH C 14 314 60 HOH HOH . 
M 5 HOH C 15 315 52 HOH HOH . 
M 5 HOH C 16 316 86 HOH HOH . 
M 5 HOH C 17 317 35 HOH HOH . 
M 5 HOH C 18 318 74 HOH HOH . 
M 5 HOH C 19 319 57 HOH HOH . 
M 5 HOH C 20 320 72 HOH HOH . 
N 5 HOH D 1 301 92 HOH HOH . 
N 5 HOH D 2 302 84 HOH HOH . 
N 5 HOH D 3 303 51 HOH HOH . 
N 5 HOH D 4 304 81 HOH HOH . 
N 5 HOH D 5 305 41 HOH HOH . 
N 5 HOH D 6 306 88 HOH HOH . 
N 5 HOH D 7 307 94 HOH HOH . 
N 5 HOH D 8 308 56 HOH HOH . 
N 5 HOH D 9 309 50 HOH HOH . 
N 5 HOH D 10 310 38 HOH HOH . 
N 5 HOH D 11 311 49 HOH HOH . 
N 5 HOH D 12 312 43 HOH HOH . 
N 5 HOH D 13 313 44 HOH HOH . 
N 5 HOH D 14 314 45 HOH HOH . 
N 5 HOH D 15 315 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . H 3 9.064 -29.034 4.963 1 48.54 ? C1 NAG 201 D 1 
HETATM 2 C C2 NAG . . . H 3 8.829 -29.909 3.728 1 53.9 ? C2 NAG 201 D 1 
HETATM 3 C C3 NAG . . . H 3 9.433 -29.256 2.486 1 66.64 ? C3 NAG 201 D 1 
HETATM 4 C C4 NAG . . . H 3 8.95 -27.819 2.342 1 66 ? C4 NAG 201 D 1 
HETATM 5 C C5 NAG . . . H 3 9.209 -27.049 3.632 1 63.32 ? C5 NAG 201 D 1 
HETATM 6 C C6 NAG . . . H 3 8.664 -25.64 3.604 1 67.07 ? C6 NAG 201 D 1 
HETATM 7 C C7 NAG . . . H 3 8.669 -32.359 3.792 1 64.43 ? C7 NAG 201 D 1 
HETATM 8 C C8 NAG . . . H 3 9.407 -33.642 4.028 1 59.16 ? C8 NAG 201 D 1 
HETATM 9 N N2 NAG . . . H 3 9.385 -31.238 3.922 1 58.35 ? N2 NAG 201 D 1 
HETATM 10 O O3 NAG . . . H 3 9.066 -30.005 1.334 1 77.9 ? O3 NAG 201 D 1 
HETATM 11 O O4 NAG . . . H 3 9.638 -27.183 1.27 1 59.63 ? O4 NAG 201 D 1 
HETATM 12 O O5 NAG . . . H 3 8.567 -27.721 4.724 1 54.66 ? O5 NAG 201 D 1 
HETATM 13 O O6 NAG . . . H 3 7.243 -25.628 3.629 1 74.47 ? O6 NAG 201 D 1 
HETATM 14 O O7 NAG . . . H 3 7.478 -32.338 3.498 1 71.4 ? O7 NAG 201 D 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#