data_5KWY # _model_server_result.job_id JC1XHVfks33sfjBmIzcUPg _model_server_result.datetime_utc '2024-11-16 02:30:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":203}' # _entry.id 5KWY # _exptl.entry_id 5KWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.717 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLEST-5-EN-3-YL HYDROGEN SULFATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KWY _cell.length_a 98.956 _cell.length_b 109.686 _cell.length_c 154.56 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 468 1_555 A SG CYS 106 A CYS 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 143 A CYS 516 1_555 A SG CYS 160 A CYS 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 95 B CYS 468 1_555 B SG CYS 106 B CYS 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 143 B CYS 516 1_555 B SG CYS 160 B CYS 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 C SG CYS 8 C CYS 27 1_555 C SG CYS 121 C CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 C SG CYS 23 C CYS 42 1_555 C SG CYS 28 C CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 C SG CYS 74 C CYS 93 1_555 C SG CYS 80 C CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 D SG CYS 8 D CYS 27 1_555 D SG CYS 121 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf9 D SG CYS 23 D CYS 42 1_555 D SG CYS 28 D CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf10 D SG CYS 74 D CYS 93 1_555 D SG CYS 80 D CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C ND2 ASN 39 C ASN 58 1_555 E C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 C ND2 ASN 116 C ASN 135 1_555 F C1 NAG . C NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 D ND2 ASN 39 D ASN 58 1_555 H C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 D ND2 ASN 116 D ASN 135 1_555 I C1 NAG . D NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C27 H46 O4 S' _chem_comp.formula_weight 466.717 _chem_comp.id C3S _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLEST-5-EN-3-YL HYDROGEN SULFATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CHOLESTEROL-SULFATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C65 C63 C3S sing 70 n n C65 H651 C3S sing 71 n n C65 H652 C3S sing 72 n n C65 H653 C3S sing 73 n n C63 C69 C3S sing 74 n n C63 C60 C3S sing 75 n n C63 H63 C3S sing 76 n n C69 H691 C3S sing 77 n n C69 H692 C3S sing 78 n n C69 H693 C3S sing 79 n n C60 C57 C3S sing 80 n n C60 H601 C3S sing 81 n n C60 H602 C3S sing 82 n n C57 C54 C3S sing 83 n n C57 H571 C3S sing 84 n n C57 H572 C3S sing 85 n n C54 C48 C3S sing 86 n n C54 H541 C3S sing 87 n n C54 H542 C3S sing 88 n n C48 C50 C3S sing 89 n n C48 C38 C3S sing 90 n n C48 H48 C3S sing 91 n n C50 H501 C3S sing 92 n n C50 H502 C3S sing 93 n n C50 H503 C3S sing 94 n n C38 C35 C3S sing 95 n n C38 C29 C3S sing 96 n n C38 H38 C3S sing 97 n n C35 C32 C3S sing 98 n n C35 H351 C3S sing 99 n n C35 H352 C3S sing 100 n n C29 C26 C3S sing 101 n n C29 C40 C3S sing 102 n n C29 C30 C3S sing 103 n n C26 C23 C3S sing 104 n n C26 H261 C3S sing 105 n n C26 H262 C3S sing 106 n n C40 H401 C3S sing 107 n n C40 H402 C3S sing 108 n n C40 H403 C3S sing 109 n n C30 C32 C3S sing 110 n n C30 C18 C3S sing 111 n n C30 H30 C3S sing 112 n n C32 H321 C3S sing 113 n n C32 H322 C3S sing 114 n n C18 C15 C3S sing 115 n n C18 C20 C3S sing 116 n n C18 H18 C3S sing 117 n n C15 C13 C3S sing 118 n n C15 H151 C3S sing 119 n n C15 H152 C3S sing 120 n n C20 C23 C3S sing 121 n n C20 C22 C3S sing 122 n n C20 H20 C3S sing 123 n n C23 H231 C3S sing 124 n n C23 H232 C3S sing 125 n n C22 C44 C3S sing 126 n n C22 C12 C3S sing 127 n n C22 C1 C3S sing 128 n n C44 H441 C3S sing 129 n n C44 H442 C3S sing 130 n n C44 H443 C3S sing 131 n n C12 C9 C3S sing 132 n n C12 C13 C3S doub 133 n n C9 C7 C3S sing 134 n n C9 H91 C3S sing 135 n n C9 H92 C3S sing 136 n n C13 H13 C3S sing 137 n n C1 C4 C3S sing 138 n n C1 H11 C3S sing 139 n n C1 H12 C3S sing 140 n n C4 C7 C3S sing 141 n n C4 H41 C3S sing 142 n n C4 H42 C3S sing 143 n n C7 O6 C3S sing 144 n n C7 H7 C3S sing 145 n n O6 S1 C3S sing 146 n n S1 O3 C3S sing 147 n n S1 O2 C3S doub 148 n n S1 O4 C3S doub 149 n n O3 HO3 C3S sing 150 n n # _atom_sites.entry_id 5KWY _atom_sites.fract_transf_matrix[1][1] 0.010106 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009117 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00647 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG C 1 201 1 NAG NAG . F 3 NAG C 1 202 2 NAG NAG . G 4 C3S C 1 203 1 C3S C3S . H 3 NAG D 1 201 3 NAG NAG . I 3 NAG D 1 202 4 NAG NAG . J 4 C3S D 1 203 2 C3S C3S . K 5 HOH A 1 701 1 HOH HOH . K 5 HOH A 2 702 75 HOH HOH . K 5 HOH A 3 703 8 HOH HOH . K 5 HOH A 4 704 22 HOH HOH . K 5 HOH A 5 705 36 HOH HOH . K 5 HOH A 6 706 23 HOH HOH . K 5 HOH A 7 707 24 HOH HOH . K 5 HOH A 8 708 37 HOH HOH . K 5 HOH A 9 709 58 HOH HOH . K 5 HOH A 10 710 48 HOH HOH . K 5 HOH A 11 711 31 HOH HOH . K 5 HOH A 12 712 10 HOH HOH . K 5 HOH A 13 713 54 HOH HOH . K 5 HOH A 14 714 40 HOH HOH . K 5 HOH A 15 715 2 HOH HOH . K 5 HOH A 16 716 89 HOH HOH . K 5 HOH A 17 717 79 HOH HOH . K 5 HOH A 18 718 26 HOH HOH . K 5 HOH A 19 719 42 HOH HOH . K 5 HOH A 20 720 7 HOH HOH . K 5 HOH A 21 721 76 HOH HOH . K 5 HOH A 22 722 18 HOH HOH . K 5 HOH A 23 723 68 HOH HOH . K 5 HOH A 24 724 59 HOH HOH . K 5 HOH A 25 725 82 HOH HOH . K 5 HOH A 26 726 87 HOH HOH . K 5 HOH A 27 727 73 HOH HOH . K 5 HOH A 28 728 98 HOH HOH . K 5 HOH A 29 729 90 HOH HOH . K 5 HOH A 30 730 91 HOH HOH . L 5 HOH B 1 701 65 HOH HOH . L 5 HOH B 2 702 15 HOH HOH . L 5 HOH B 3 703 14 HOH HOH . L 5 HOH B 4 704 99 HOH HOH . L 5 HOH B 5 705 4 HOH HOH . L 5 HOH B 6 706 39 HOH HOH . L 5 HOH B 7 707 12 HOH HOH . L 5 HOH B 8 708 11 HOH HOH . L 5 HOH B 9 709 32 HOH HOH . L 5 HOH B 10 710 27 HOH HOH . L 5 HOH B 11 711 25 HOH HOH . L 5 HOH B 12 712 102 HOH HOH . L 5 HOH B 13 713 105 HOH HOH . L 5 HOH B 14 714 96 HOH HOH . L 5 HOH B 15 715 3 HOH HOH . L 5 HOH B 16 716 28 HOH HOH . L 5 HOH B 17 717 13 HOH HOH . L 5 HOH B 18 718 9 HOH HOH . L 5 HOH B 19 719 69 HOH HOH . L 5 HOH B 20 720 17 HOH HOH . L 5 HOH B 21 721 5 HOH HOH . L 5 HOH B 22 722 64 HOH HOH . L 5 HOH B 23 723 19 HOH HOH . L 5 HOH B 24 724 29 HOH HOH . L 5 HOH B 25 725 62 HOH HOH . L 5 HOH B 26 726 97 HOH HOH . L 5 HOH B 27 727 53 HOH HOH . L 5 HOH B 28 728 20 HOH HOH . L 5 HOH B 29 729 71 HOH HOH . L 5 HOH B 30 730 34 HOH HOH . L 5 HOH B 31 731 66 HOH HOH . L 5 HOH B 32 732 85 HOH HOH . L 5 HOH B 33 733 100 HOH HOH . L 5 HOH B 34 734 78 HOH HOH . L 5 HOH B 35 735 33 HOH HOH . L 5 HOH B 36 736 67 HOH HOH . L 5 HOH B 37 737 104 HOH HOH . L 5 HOH B 38 738 101 HOH HOH . L 5 HOH B 39 739 16 HOH HOH . L 5 HOH B 40 740 103 HOH HOH . M 5 HOH C 1 301 95 HOH HOH . M 5 HOH C 2 302 83 HOH HOH . M 5 HOH C 3 303 77 HOH HOH . M 5 HOH C 4 304 46 HOH HOH . M 5 HOH C 5 305 47 HOH HOH . M 5 HOH C 6 306 30 HOH HOH . M 5 HOH C 7 307 21 HOH HOH . M 5 HOH C 8 308 80 HOH HOH . M 5 HOH C 9 309 6 HOH HOH . M 5 HOH C 10 310 61 HOH HOH . M 5 HOH C 11 311 70 HOH HOH . M 5 HOH C 12 312 63 HOH HOH . M 5 HOH C 13 313 93 HOH HOH . M 5 HOH C 14 314 60 HOH HOH . M 5 HOH C 15 315 52 HOH HOH . M 5 HOH C 16 316 86 HOH HOH . M 5 HOH C 17 317 35 HOH HOH . M 5 HOH C 18 318 74 HOH HOH . M 5 HOH C 19 319 57 HOH HOH . M 5 HOH C 20 320 72 HOH HOH . N 5 HOH D 1 301 92 HOH HOH . N 5 HOH D 2 302 84 HOH HOH . N 5 HOH D 3 303 51 HOH HOH . N 5 HOH D 4 304 81 HOH HOH . N 5 HOH D 5 305 41 HOH HOH . N 5 HOH D 6 306 88 HOH HOH . N 5 HOH D 7 307 94 HOH HOH . N 5 HOH D 8 308 56 HOH HOH . N 5 HOH D 9 309 50 HOH HOH . N 5 HOH D 10 310 38 HOH HOH . N 5 HOH D 11 311 49 HOH HOH . N 5 HOH D 12 312 43 HOH HOH . N 5 HOH D 13 313 44 HOH HOH . N 5 HOH D 14 314 45 HOH HOH . N 5 HOH D 15 315 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C65 C3S . . . J 4 5.943 -31.405 17.097 1 75.23 ? C65 C3S 203 D 1 HETATM 2 C C63 C3S . . . J 4 5.299 -32.324 18.129 1 68.3 ? C63 C3S 203 D 1 HETATM 3 C C69 C3S . . . J 4 4.153 -33.121 17.519 1 73.46 ? C69 C3S 203 D 1 HETATM 4 C C60 C3S . . . J 4 6.331 -33.253 18.751 1 65.56 ? C60 C3S 203 D 1 HETATM 5 C C57 C3S . . . J 4 5.662 -34.19 19.745 1 62.12 ? C57 C3S 203 D 1 HETATM 6 C C54 C3S . . . J 4 6.673 -34.686 20.766 1 56.42 ? C54 C3S 203 D 1 HETATM 7 C C48 C3S . . . J 4 5.965 -35.172 22.022 1 55.05 ? C48 C3S 203 D 1 HETATM 8 C C50 C3S . . . J 4 5.245 -36.481 21.719 1 55.72 ? C50 C3S 203 D 1 HETATM 9 C C38 C3S . . . J 4 6.973 -35.299 23.159 1 52.01 ? C38 C3S 203 D 1 HETATM 10 C C35 C3S . . . J 4 7.979 -34.141 23.153 1 50.61 ? C35 C3S 203 D 1 HETATM 11 C C29 C3S . . . J 4 6.379 -35.293 24.565 1 55.9 ? C29 C3S 203 D 1 HETATM 12 C C26 C3S . . . J 4 5.929 -36.649 25.092 1 56.16 ? C26 C3S 203 D 1 HETATM 13 C C40 C3S . . . J 4 5.234 -34.285 24.639 1 55.18 ? C40 C3S 203 D 1 HETATM 14 C C30 C3S . . . J 4 7.568 -34.842 25.393 1 56.83 ? C30 C3S 203 D 1 HETATM 15 C C32 C3S . . . J 4 8.176 -33.693 24.603 1 53.65 ? C32 C3S 203 D 1 HETATM 16 C C18 C3S . . . J 4 7.208 -34.614 26.851 1 52.78 ? C18 C3S 203 D 1 HETATM 17 C C15 C3S . . . J 4 8.435 -34.137 27.606 1 54.88 ? C15 C3S 203 D 1 HETATM 18 C C20 C3S . . . J 4 6.732 -35.953 27.396 1 55.6 ? C20 C3S 203 D 1 HETATM 19 C C23 C3S . . . J 4 5.575 -36.522 26.571 1 60.86 ? C23 C3S 203 D 1 HETATM 20 C C22 C3S . . . J 4 6.35 -35.895 28.869 1 67.24 ? C22 C3S 203 D 1 HETATM 21 C C44 C3S . . . J 4 4.976 -35.253 29.018 1 67.22 ? C44 C3S 203 D 1 HETATM 22 C C12 C3S . . . J 4 7.345 -35.091 29.673 1 71.78 ? C12 C3S 203 D 1 HETATM 23 C C9 C3S . . . J 4 7.312 -35.18 31.183 1 80.68 ? C9 C3S 203 D 1 HETATM 24 C C13 C3S . . . J 4 8.25 -34.28 29.099 1 62.35 ? C13 C3S 203 D 1 HETATM 25 C C1 C3S . . . J 4 6.336 -37.319 29.411 1 71.83 ? C1 C3S 203 D 1 HETATM 26 C C4 C3S . . . J 4 6.1 -37.334 30.914 1 80.72 ? C4 C3S 203 D 1 HETATM 27 C C7 C3S . . . J 4 7.23 -36.629 31.654 1 91.81 ? C7 C3S 203 D 1 HETATM 28 O O6 C3S . . . J 4 6.947 -36.65 33.054 1 109.37 ? O6 C3S 203 D 1 HETATM 29 S S1 C3S . . . J 4 7.527 -37.734 33.977 1 117.6 ? S1 C3S 203 D 1 HETATM 30 O O3 C3S . . . J 4 8.983 -37.255 34.547 1 115.66 ? O3 C3S 203 D 1 HETATM 31 O O2 C3S . . . J 4 6.628 -37.944 35.078 1 115.95 ? O2 C3S 203 D 1 HETATM 32 O O4 C3S . . . J 4 7.678 -38.964 33.251 1 121.26 ? O4 C3S 203 D 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #