data_5KX5 # _model_server_result.job_id m3STyVSeeTCra3wQu-MytQ _model_server_result.datetime_utc '2024-11-05 05:27:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kx5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":503}' # _entry.id 5KX5 # _exptl.entry_id 5KX5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KX5 _cell.length_a 104.79 _cell.length_b 153.9 _cell.length_c 185.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KX5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 L N N ? 7 Q N N ? 7 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc10 X O HOH . A HOH 601 1_555 V CA CA . E CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc11 B OE2 GLU 111 B GLU 113 1_555 L CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.196 ? metalc ? metalc12 B OG SER 296 B SER 298 1_555 N MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? metalc ? metalc13 N MG MG . B MG 505 1_555 Y O HOH . B HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc14 C OD1 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc15 C OD2 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc16 C O THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc17 C OE1 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? metalc ? metalc18 C OE2 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc19 O O1G GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc20 O O1B GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc21 D OE1 GLN 11 D GLN 11 1_555 T MG MG . D MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc22 R O1A GDP . D GDP 501 1_555 T MG MG . D MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc23 T MG MG . D MG 503 1_555 AA O HOH . D HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KX5 _atom_sites.fract_transf_matrix[1][1] 0.009543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006498 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 8 GDP B 1 501 501 GDP GDP . K 6 MG B 1 502 502 MG MG . L 7 CA B 1 503 503 CA CA . M 9 6YK B 1 504 3 6YK PFE . N 6 MG B 1 505 1 MG MG . O 5 GTP C 1 501 501 GTP GTP . P 6 MG C 1 502 502 MG MG . Q 7 CA C 1 503 503 CA CA . R 8 GDP D 1 501 600 GDP GDP . S 6 MG D 1 502 601 MG MG . T 6 MG D 1 503 602 MG MG . U 9 6YK D 1 504 4 6YK PFE . V 7 CA E 1 201 505 CA CA . W 10 ADP F 1 401 703 ADP ADP . X 11 HOH A 1 601 33 HOH HOH . X 11 HOH A 2 602 89 HOH HOH . X 11 HOH A 3 603 49 HOH HOH . X 11 HOH A 4 604 27 HOH HOH . X 11 HOH A 5 605 81 HOH HOH . X 11 HOH A 6 606 79 HOH HOH . X 11 HOH A 7 607 41 HOH HOH . X 11 HOH A 8 608 32 HOH HOH . X 11 HOH A 9 609 90 HOH HOH . X 11 HOH A 10 610 63 HOH HOH . X 11 HOH A 11 611 50 HOH HOH . X 11 HOH A 12 612 105 HOH HOH . X 11 HOH A 13 613 80 HOH HOH . X 11 HOH A 14 614 48 HOH HOH . X 11 HOH A 15 615 40 HOH HOH . X 11 HOH A 16 616 39 HOH HOH . X 11 HOH A 17 617 110 HOH HOH . X 11 HOH A 18 618 29 HOH HOH . X 11 HOH A 19 619 58 HOH HOH . X 11 HOH A 20 620 82 HOH HOH . X 11 HOH A 21 621 64 HOH HOH . X 11 HOH A 22 622 106 HOH HOH . Y 11 HOH B 1 601 66 HOH HOH . Y 11 HOH B 2 602 1 HOH HOH . Y 11 HOH B 3 603 60 HOH HOH . Y 11 HOH B 4 604 84 HOH HOH . Y 11 HOH B 5 605 5 HOH HOH . Y 11 HOH B 6 606 52 HOH HOH . Y 11 HOH B 7 607 61 HOH HOH . Y 11 HOH B 8 608 2 HOH HOH . Y 11 HOH B 9 609 62 HOH HOH . Y 11 HOH B 10 610 78 HOH HOH . Y 11 HOH B 11 611 76 HOH HOH . Y 11 HOH B 12 612 55 HOH HOH . Y 11 HOH B 13 613 12 HOH HOH . Y 11 HOH B 14 614 11 HOH HOH . Y 11 HOH B 15 615 88 HOH HOH . Y 11 HOH B 16 616 103 HOH HOH . Y 11 HOH B 17 617 104 HOH HOH . Y 11 HOH B 18 618 25 HOH HOH . Y 11 HOH B 19 619 87 HOH HOH . Y 11 HOH B 20 620 72 HOH HOH . Y 11 HOH B 21 621 6 HOH HOH . Y 11 HOH B 22 622 85 HOH HOH . Y 11 HOH B 23 623 75 HOH HOH . Y 11 HOH B 24 624 20 HOH HOH . Y 11 HOH B 25 625 14 HOH HOH . Y 11 HOH B 26 626 100 HOH HOH . Y 11 HOH B 27 627 13 HOH HOH . Y 11 HOH B 28 628 71 HOH HOH . Y 11 HOH B 29 629 4 HOH HOH . Y 11 HOH B 30 630 67 HOH HOH . Y 11 HOH B 31 631 44 HOH HOH . Y 11 HOH B 32 632 77 HOH HOH . Y 11 HOH B 33 633 74 HOH HOH . Z 11 HOH C 1 601 121 HOH HOH . Z 11 HOH C 2 602 114 HOH HOH . Z 11 HOH C 3 603 10 HOH HOH . Z 11 HOH C 4 604 113 HOH HOH . Z 11 HOH C 5 605 24 HOH HOH . Z 11 HOH C 6 606 73 HOH HOH . Z 11 HOH C 7 607 8 HOH HOH . Z 11 HOH C 8 608 46 HOH HOH . Z 11 HOH C 9 609 119 HOH HOH . Z 11 HOH C 10 610 47 HOH HOH . Z 11 HOH C 11 611 36 HOH HOH . Z 11 HOH C 12 612 56 HOH HOH . Z 11 HOH C 13 613 18 HOH HOH . Z 11 HOH C 14 614 53 HOH HOH . Z 11 HOH C 15 615 21 HOH HOH . Z 11 HOH C 16 616 86 HOH HOH . Z 11 HOH C 17 617 120 HOH HOH . Z 11 HOH C 18 618 23 HOH HOH . Z 11 HOH C 19 619 54 HOH HOH . Z 11 HOH C 20 620 68 HOH HOH . Z 11 HOH C 21 621 101 HOH HOH . Z 11 HOH C 22 622 115 HOH HOH . Z 11 HOH C 23 623 37 HOH HOH . Z 11 HOH C 24 624 118 HOH HOH . Z 11 HOH C 25 625 65 HOH HOH . Z 11 HOH C 26 626 116 HOH HOH . Z 11 HOH C 27 627 22 HOH HOH . Z 11 HOH C 28 628 117 HOH HOH . Z 11 HOH C 29 629 70 HOH HOH . Z 11 HOH C 30 630 9 HOH HOH . Z 11 HOH C 31 631 3 HOH HOH . Z 11 HOH C 32 632 112 HOH HOH . Z 11 HOH C 33 633 19 HOH HOH . Z 11 HOH C 34 634 45 HOH HOH . Z 11 HOH C 35 635 7 HOH HOH . Z 11 HOH C 36 636 16 HOH HOH . Z 11 HOH C 37 637 34 HOH HOH . Z 11 HOH C 38 638 69 HOH HOH . Z 11 HOH C 39 639 43 HOH HOH . Z 11 HOH C 40 640 83 HOH HOH . Z 11 HOH C 41 641 17 HOH HOH . AA 11 HOH D 1 601 38 HOH HOH . AA 11 HOH D 2 602 42 HOH HOH . AA 11 HOH D 3 603 111 HOH HOH . AA 11 HOH D 4 604 109 HOH HOH . AA 11 HOH D 5 605 31 HOH HOH . AA 11 HOH D 6 606 108 HOH HOH . AA 11 HOH D 7 607 28 HOH HOH . BA 11 HOH E 1 301 15 HOH HOH . BA 11 HOH E 2 302 26 HOH HOH . BA 11 HOH E 3 303 57 HOH HOH . BA 11 HOH E 4 304 102 HOH HOH . CA 11 HOH F 1 501 95 HOH HOH . CA 11 HOH F 2 502 122 HOH HOH . CA 11 HOH F 3 503 99 HOH HOH . CA 11 HOH F 4 504 92 HOH HOH . CA 11 HOH F 5 505 94 HOH HOH . CA 11 HOH F 6 506 96 HOH HOH . CA 11 HOH F 7 507 93 HOH HOH . CA 11 HOH F 8 508 91 HOH HOH . CA 11 HOH F 9 509 51 HOH HOH . CA 11 HOH F 10 510 107 HOH HOH . CA 11 HOH F 11 511 97 HOH HOH . CA 11 HOH F 12 512 98 HOH HOH . CA 11 HOH F 13 513 35 HOH HOH . CA 11 HOH F 14 514 30 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 7 _atom_site.Cartn_x 14.059 _atom_site.Cartn_y 54.196 _atom_site.Cartn_z -11.843 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 71.48 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 503 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #