data_5KX5
#
_model_server_result.job_id            FrHzftMylsd21wYHdvDdMQ 
_model_server_result.datetime_utc      '2024-11-05 05:31:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kx5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":503}' 
#
_entry.id    5KX5 
#
_exptl.entry_id    5KX5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KX5 
_cell.length_a            104.79 
_cell.length_b            153.9 
_cell.length_c            185.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KX5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 K N N 
? 6 N N N 
? 6 P N N 
? 6 S N N 
? 6 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? 
metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? 
metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? 
metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc10 X O HOH . A HOH 601 1_555 V CA CA . E CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? 
metalc ? metalc11 B OE2 GLU 111 B GLU 113 1_555 L CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.196 ? 
metalc ? metalc12 B OG SER 296 B SER 298 1_555 N MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? 
metalc ? metalc13 N MG MG . B MG 505 1_555 Y O HOH . B HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? 
metalc ? metalc14 C OD1 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? 
metalc ? metalc15 C OD2 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc16 C O THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc17 C OE1 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? 
metalc ? metalc18 C OE2 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc19 O O1G GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc20 O O1B GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc21 D OE1 GLN 11 D GLN 11 1_555 T MG MG . D MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? 
metalc ? metalc22 R O1A GDP . D GDP 501 1_555 T MG MG . D MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc23 T MG MG . D MG 503 1_555 AA O HOH . D HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5KX5 
_atom_sites.fract_transf_matrix[1][1]    0.009543 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006498 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0054 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GTP A 1 501 501 GTP GTP . 
H 6 MG A 1 502 502 MG MG . 
I 7 CA A 1 503 503 CA CA . 
J 8 GDP B 1 501 501 GDP GDP . 
K 6 MG B 1 502 502 MG MG . 
L 7 CA B 1 503 503 CA CA . 
M 9 6YK B 1 504 3 6YK PFE . 
N 6 MG B 1 505 1 MG MG . 
O 5 GTP C 1 501 501 GTP GTP . 
P 6 MG C 1 502 502 MG MG . 
Q 7 CA C 1 503 503 CA CA . 
R 8 GDP D 1 501 600 GDP GDP . 
S 6 MG D 1 502 601 MG MG . 
T 6 MG D 1 503 602 MG MG . 
U 9 6YK D 1 504 4 6YK PFE . 
V 7 CA E 1 201 505 CA CA . 
W 10 ADP F 1 401 703 ADP ADP . 
X 11 HOH A 1 601 33 HOH HOH . 
X 11 HOH A 2 602 89 HOH HOH . 
X 11 HOH A 3 603 49 HOH HOH . 
X 11 HOH A 4 604 27 HOH HOH . 
X 11 HOH A 5 605 81 HOH HOH . 
X 11 HOH A 6 606 79 HOH HOH . 
X 11 HOH A 7 607 41 HOH HOH . 
X 11 HOH A 8 608 32 HOH HOH . 
X 11 HOH A 9 609 90 HOH HOH . 
X 11 HOH A 10 610 63 HOH HOH . 
X 11 HOH A 11 611 50 HOH HOH . 
X 11 HOH A 12 612 105 HOH HOH . 
X 11 HOH A 13 613 80 HOH HOH . 
X 11 HOH A 14 614 48 HOH HOH . 
X 11 HOH A 15 615 40 HOH HOH . 
X 11 HOH A 16 616 39 HOH HOH . 
X 11 HOH A 17 617 110 HOH HOH . 
X 11 HOH A 18 618 29 HOH HOH . 
X 11 HOH A 19 619 58 HOH HOH . 
X 11 HOH A 20 620 82 HOH HOH . 
X 11 HOH A 21 621 64 HOH HOH . 
X 11 HOH A 22 622 106 HOH HOH . 
Y 11 HOH B 1 601 66 HOH HOH . 
Y 11 HOH B 2 602 1 HOH HOH . 
Y 11 HOH B 3 603 60 HOH HOH . 
Y 11 HOH B 4 604 84 HOH HOH . 
Y 11 HOH B 5 605 5 HOH HOH . 
Y 11 HOH B 6 606 52 HOH HOH . 
Y 11 HOH B 7 607 61 HOH HOH . 
Y 11 HOH B 8 608 2 HOH HOH . 
Y 11 HOH B 9 609 62 HOH HOH . 
Y 11 HOH B 10 610 78 HOH HOH . 
Y 11 HOH B 11 611 76 HOH HOH . 
Y 11 HOH B 12 612 55 HOH HOH . 
Y 11 HOH B 13 613 12 HOH HOH . 
Y 11 HOH B 14 614 11 HOH HOH . 
Y 11 HOH B 15 615 88 HOH HOH . 
Y 11 HOH B 16 616 103 HOH HOH . 
Y 11 HOH B 17 617 104 HOH HOH . 
Y 11 HOH B 18 618 25 HOH HOH . 
Y 11 HOH B 19 619 87 HOH HOH . 
Y 11 HOH B 20 620 72 HOH HOH . 
Y 11 HOH B 21 621 6 HOH HOH . 
Y 11 HOH B 22 622 85 HOH HOH . 
Y 11 HOH B 23 623 75 HOH HOH . 
Y 11 HOH B 24 624 20 HOH HOH . 
Y 11 HOH B 25 625 14 HOH HOH . 
Y 11 HOH B 26 626 100 HOH HOH . 
Y 11 HOH B 27 627 13 HOH HOH . 
Y 11 HOH B 28 628 71 HOH HOH . 
Y 11 HOH B 29 629 4 HOH HOH . 
Y 11 HOH B 30 630 67 HOH HOH . 
Y 11 HOH B 31 631 44 HOH HOH . 
Y 11 HOH B 32 632 77 HOH HOH . 
Y 11 HOH B 33 633 74 HOH HOH . 
Z 11 HOH C 1 601 121 HOH HOH . 
Z 11 HOH C 2 602 114 HOH HOH . 
Z 11 HOH C 3 603 10 HOH HOH . 
Z 11 HOH C 4 604 113 HOH HOH . 
Z 11 HOH C 5 605 24 HOH HOH . 
Z 11 HOH C 6 606 73 HOH HOH . 
Z 11 HOH C 7 607 8 HOH HOH . 
Z 11 HOH C 8 608 46 HOH HOH . 
Z 11 HOH C 9 609 119 HOH HOH . 
Z 11 HOH C 10 610 47 HOH HOH . 
Z 11 HOH C 11 611 36 HOH HOH . 
Z 11 HOH C 12 612 56 HOH HOH . 
Z 11 HOH C 13 613 18 HOH HOH . 
Z 11 HOH C 14 614 53 HOH HOH . 
Z 11 HOH C 15 615 21 HOH HOH . 
Z 11 HOH C 16 616 86 HOH HOH . 
Z 11 HOH C 17 617 120 HOH HOH . 
Z 11 HOH C 18 618 23 HOH HOH . 
Z 11 HOH C 19 619 54 HOH HOH . 
Z 11 HOH C 20 620 68 HOH HOH . 
Z 11 HOH C 21 621 101 HOH HOH . 
Z 11 HOH C 22 622 115 HOH HOH . 
Z 11 HOH C 23 623 37 HOH HOH . 
Z 11 HOH C 24 624 118 HOH HOH . 
Z 11 HOH C 25 625 65 HOH HOH . 
Z 11 HOH C 26 626 116 HOH HOH . 
Z 11 HOH C 27 627 22 HOH HOH . 
Z 11 HOH C 28 628 117 HOH HOH . 
Z 11 HOH C 29 629 70 HOH HOH . 
Z 11 HOH C 30 630 9 HOH HOH . 
Z 11 HOH C 31 631 3 HOH HOH . 
Z 11 HOH C 32 632 112 HOH HOH . 
Z 11 HOH C 33 633 19 HOH HOH . 
Z 11 HOH C 34 634 45 HOH HOH . 
Z 11 HOH C 35 635 7 HOH HOH . 
Z 11 HOH C 36 636 16 HOH HOH . 
Z 11 HOH C 37 637 34 HOH HOH . 
Z 11 HOH C 38 638 69 HOH HOH . 
Z 11 HOH C 39 639 43 HOH HOH . 
Z 11 HOH C 40 640 83 HOH HOH . 
Z 11 HOH C 41 641 17 HOH HOH . 
AA 11 HOH D 1 601 38 HOH HOH . 
AA 11 HOH D 2 602 42 HOH HOH . 
AA 11 HOH D 3 603 111 HOH HOH . 
AA 11 HOH D 4 604 109 HOH HOH . 
AA 11 HOH D 5 605 31 HOH HOH . 
AA 11 HOH D 6 606 108 HOH HOH . 
AA 11 HOH D 7 607 28 HOH HOH . 
BA 11 HOH E 1 301 15 HOH HOH . 
BA 11 HOH E 2 302 26 HOH HOH . 
BA 11 HOH E 3 303 57 HOH HOH . 
BA 11 HOH E 4 304 102 HOH HOH . 
CA 11 HOH F 1 501 95 HOH HOH . 
CA 11 HOH F 2 502 122 HOH HOH . 
CA 11 HOH F 3 503 99 HOH HOH . 
CA 11 HOH F 4 504 92 HOH HOH . 
CA 11 HOH F 5 505 94 HOH HOH . 
CA 11 HOH F 6 506 96 HOH HOH . 
CA 11 HOH F 7 507 93 HOH HOH . 
CA 11 HOH F 8 508 91 HOH HOH . 
CA 11 HOH F 9 509 51 HOH HOH . 
CA 11 HOH F 10 510 107 HOH HOH . 
CA 11 HOH F 11 511 97 HOH HOH . 
CA 11 HOH F 12 512 98 HOH HOH . 
CA 11 HOH F 13 513 35 HOH HOH . 
CA 11 HOH F 14 514 30 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         T 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               22.27 
_atom_site.Cartn_y               -15.767 
_atom_site.Cartn_z               -43.869 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        61.9 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           503 
_atom_site.auth_asym_id          D 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#