data_5KX8 # _model_server_result.job_id qpdF105AnmlsUtacf9RjgQ _model_server_result.datetime_utc '2025-08-04 05:35:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kx8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 5KX8 # _exptl.entry_id 5KX8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 369.381 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(3-aminocarbonyl-1-methyl-pyrazol-4-yl)-5-piperazin-1-yl-pyrazolo[1,5-a]pyrimidine-3-carboxamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.25 _cell.angle_gamma 90 _cell.entry_id 5KX8 _cell.length_a 142.7 _cell.length_b 139.88 _cell.length_c 87.44 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KX8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TPO 183 A TPO 342 1_555 A N VAL 184 A VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C MET 185 A MET 344 1_555 A N TPO 186 A TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale3 A C TPO 186 A TPO 345 1_555 A N SEP 187 A SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 A C SEP 187 A SEP 346 1_555 A N ARG 188 A ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 B C GLN 182 B GLN 341 1_555 B N TPO 183 B TPO 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale6 B C TPO 183 B TPO 342 1_555 B N VAL 184 B VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 B C MET 185 B MET 344 1_555 B N TPO 186 B TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale8 B C TPO 186 B TPO 345 1_555 B N SEP 187 B SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale9 B C SEP 187 B SEP 346 1_555 B N ARG 188 B ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale10 C C TPO 183 C TPO 342 1_555 C N VAL 184 C VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale11 C C MET 185 C MET 344 1_555 C N TPO 186 C TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale12 C C TPO 186 C TPO 345 1_555 C N SEP 187 C SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale13 C C SEP 187 C SEP 346 1_555 C N ARG 188 C ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale14 D C TPO 183 D TPO 342 1_555 D N VAL 184 D VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale15 D C MET 185 D MET 344 1_555 D N TPO 186 D TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 D C TPO 186 D TPO 345 1_555 D N SEP 187 D SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale17 D C SEP 187 D SEP 346 1_555 D N ARG 188 D ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? # _chem_comp.formula 'C16 H19 N9 O2' _chem_comp.formula_weight 369.381 _chem_comp.id 6YE _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(3-aminocarbonyl-1-methyl-pyrazol-4-yl)-5-piperazin-1-yl-pyrazolo[1,5-a]pyrimidine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C11 6YE doub 1 n y C12 N07 6YE sing 2 n y C11 C10 6YE sing 3 n y N06 N07 6YE sing 4 n y N06 C05 6YE doub 5 n y N07 C08 6YE sing 6 n y C14 C15 6YE sing 7 n n C14 N13 6YE sing 8 n n C05 C04 6YE sing 9 n y C10 N13 6YE sing 10 n n C10 N09 6YE doub 11 n y C15 N16 6YE sing 12 n n C08 N09 6YE sing 13 n y C08 C04 6YE doub 14 n y N13 C18 6YE sing 15 n n C04 C02 6YE sing 16 n n N16 C17 6YE sing 17 n n C02 O03 6YE doub 18 n n C02 N01 6YE sing 19 n n C18 C17 6YE sing 20 n n N01 C19 6YE sing 21 n n O26 C24 6YE doub 22 n n C19 C23 6YE doub 23 n y C19 C20 6YE sing 24 n y C24 C20 6YE sing 25 n n C24 N25 6YE sing 26 n n C23 N22 6YE sing 27 n y C20 N21 6YE doub 28 n y N22 N21 6YE sing 29 n y N22 C27 6YE sing 30 n n N01 H1 6YE sing 31 n n C05 H2 6YE sing 32 n n C11 H3 6YE sing 33 n n C12 H4 6YE sing 34 n n C14 H5 6YE sing 35 n n C14 H6 6YE sing 36 n n C15 H7 6YE sing 37 n n C15 H8 6YE sing 38 n n N16 H9 6YE sing 39 n n C17 H11 6YE sing 40 n n C17 H12 6YE sing 41 n n C18 H13 6YE sing 42 n n C18 H14 6YE sing 43 n n C23 H15 6YE sing 44 n n N25 H16 6YE sing 45 n n N25 H17 6YE sing 46 n n C27 H18 6YE sing 47 n n C27 H19 6YE sing 48 n n C27 H20 6YE sing 49 n n # _atom_sites.entry_id 5KX8 _atom_sites.fract_transf_matrix[1][1] 0.007008 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004953 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 6YE A 1 501 1 6YE SCH . F 2 6YE B 1 501 2 6YE SCH . G 2 6YE C 1 501 3 6YE SCH . H 2 6YE D 1 501 4 6YE SCH . I 3 HOH A 1 601 2 HOH WAT . I 3 HOH A 2 602 20 HOH WAT . I 3 HOH A 3 603 23 HOH WAT . I 3 HOH A 4 604 27 HOH WAT . I 3 HOH A 5 605 15 HOH WAT . J 3 HOH B 1 601 19 HOH WAT . J 3 HOH B 2 602 9 HOH WAT . J 3 HOH B 3 603 6 HOH WAT . J 3 HOH B 4 604 5 HOH WAT . J 3 HOH B 5 605 21 HOH WAT . K 3 HOH C 1 601 18 HOH WAT . K 3 HOH C 2 602 4 HOH WAT . K 3 HOH C 3 603 22 HOH WAT . K 3 HOH C 4 604 12 HOH WAT . K 3 HOH C 5 605 7 HOH WAT . K 3 HOH C 6 606 17 HOH WAT . K 3 HOH C 7 607 10 HOH WAT . K 3 HOH C 8 608 16 HOH WAT . K 3 HOH C 9 609 11 HOH WAT . L 3 HOH D 1 601 25 HOH WAT . L 3 HOH D 2 602 26 HOH WAT . L 3 HOH D 3 603 14 HOH WAT . L 3 HOH D 4 604 13 HOH WAT . L 3 HOH D 5 605 1 HOH WAT . L 3 HOH D 6 606 3 HOH WAT . L 3 HOH D 7 607 8 HOH WAT . L 3 HOH D 8 608 24 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 6YE . . . H 2 27.854 8.523 32.169 1 46.64 ? N01 6YE 501 D 1 HETATM 2 C C02 6YE . . . H 2 27.128 7.625 32.915 1 46.78 ? C02 6YE 501 D 1 HETATM 3 O O03 6YE . . . H 2 27.124 6.425 32.686 1 47.36 ? O03 6YE 501 D 1 HETATM 4 C C04 6YE . . . H 2 26.226 8.116 33.958 1 47.44 ? C04 6YE 501 D 1 HETATM 5 C C05 6YE . . . H 2 25.424 7.268 34.771 1 49.34 ? C05 6YE 501 D 1 HETATM 6 N N06 6YE . . . H 2 24.63 7.934 35.65 1 49.09 ? N06 6YE 501 D 1 HETATM 7 N N07 6YE . . . H 2 24.894 9.253 35.36 1 49.03 ? N07 6YE 501 D 1 HETATM 8 C C08 6YE . . . H 2 25.873 9.384 34.306 1 49.36 ? C08 6YE 501 D 1 HETATM 9 N N09 6YE . . . H 2 26.35 10.581 33.894 1 51.1 ? N09 6YE 501 D 1 HETATM 10 C C10 6YE . . . H 2 25.83 11.689 34.514 1 51.83 ? C10 6YE 501 D 1 HETATM 11 C C11 6YE . . . H 2 24.869 11.611 35.547 1 46.2 ? C11 6YE 501 D 1 HETATM 12 C C12 6YE . . . H 2 24.407 10.395 35.982 1 46.21 ? C12 6YE 501 D 1 HETATM 13 N N13 6YE . . . H 2 26.318 12.901 34.063 1 54.28 ? N13 6YE 501 D 1 HETATM 14 C C14 6YE . . . H 2 26.962 13.049 32.753 1 50.36 ? C14 6YE 501 D 1 HETATM 15 C C15 6YE . . . H 2 26.188 13.932 31.802 1 47.41 ? C15 6YE 501 D 1 HETATM 16 N N16 6YE . . . H 2 25.881 15.193 32.45 1 53.38 ? N16 6YE 501 D 1 HETATM 17 C C17 6YE . . . H 2 25.091 14.96 33.667 1 53.54 ? C17 6YE 501 D 1 HETATM 18 C C18 6YE . . . H 2 25.956 14.196 34.642 1 55.03 ? C18 6YE 501 D 1 HETATM 19 C C19 6YE . . . H 2 28.533 8.213 30.972 1 44.64 ? C19 6YE 501 D 1 HETATM 20 C C20 6YE . . . H 2 29.06 9.19 30.059 1 47.56 ? C20 6YE 501 D 1 HETATM 21 N N21 6YE . . . H 2 29.653 8.557 29.045 1 42.95 ? N21 6YE 501 D 1 HETATM 22 N N22 6YE . . . H 2 29.498 7.23 29.273 1 36.69 ? N22 6YE 501 D 1 HETATM 23 C C23 6YE . . . H 2 28.839 6.965 30.404 1 40.53 ? C23 6YE 501 D 1 HETATM 24 C C24 6YE . . . H 2 28.986 10.66 30.216 1 54.38 ? C24 6YE 501 D 1 HETATM 25 N N25 6YE . . . H 2 29.329 11.403 29.173 1 55.37 ? N25 6YE 501 D 1 HETATM 26 O O26 6YE . . . H 2 28.61 11.155 31.286 1 57.27 ? O26 6YE 501 D 1 HETATM 27 C C27 6YE . . . H 2 30.013 6.275 28.307 1 34.13 ? C27 6YE 501 D 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #