data_5KXA # _model_server_result.job_id S8RZ3h0VQBaHN88VfaNx6A _model_server_result.datetime_utc '2024-11-23 03:44:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":905}' # _entry.id 5KXA # _exptl.entry_id 5KXA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 473.923 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[6-chloranyl-2-cyclopropyl-1-(1-ethylpyrazol-4-yl)-7-fluoranyl-indol-3-yl]sulfanyl-2-fluoranyl-benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 71.56 _cell.angle_beta 79.75 _cell.angle_gamma 81.09 _cell.entry_id 5KXA _cell.length_a 55.1 _cell.length_b 55.506 _cell.length_c 70.075 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 59 A CYS 59 1_555 A SG CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 63 A CYS 63 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 A SG CYS 74 A CYS 74 1_555 A SG CYS 87 A CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? disulf ? disulf4 A SG CYS 80 A CYS 80 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf5 A SG CYS 103 A CYS 103 1_555 A SG CYS 120 A CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 A SG CYS 108 A CYS 108 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf7 A SG CYS 118 A CYS 118 1_555 A SG CYS 131 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf8 A SG CYS 124 A CYS 124 1_555 A SG CYS 130 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf9 A SG CYS 149 A CYS 149 1_555 A SG CYS 195 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 A SG CYS 157 A CYS 157 1_555 A SG CYS 351 A CYS 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf11 A SG CYS 414 A CYS 414 1_555 A SG CYS 806 A CYS 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf12 A SG CYS 775 A CYS 775 1_555 A SG CYS 785 A CYS 785 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc1 A OD1 ASP 172 A ASP 172 1_555 D ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? metalc ? metalc2 A OG1 THR 210 A THR 210 1_555 D ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.745 ? metalc ? metalc3 A OD1 ASP 312 A ASP 312 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc4 A NE2 HIS 316 A HIS 316 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc5 A OD2 ASP 359 A ASP 359 1_555 D ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc6 A NE2 HIS 360 A HIS 360 1_555 D ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc7 A NE2 HIS 475 A HIS 475 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc8 A OD1 ASP 740 A ASP 740 1_555 E CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc9 A OD1 ASP 742 A ASP 742 1_555 E CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc10 A OD1 ASP 744 A ASP 744 1_555 E CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc11 A O LEU 746 A LEU 746 1_555 E CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc12 A OD1 ASP 748 A ASP 748 1_555 E CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc13 C ZN ZN . A ZN 902 1_555 G O2 PO4 . A PO4 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc14 C ZN ZN . A ZN 902 1_555 G O3 PO4 . A PO4 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C23 H18 Cl F2 N3 O2 S' _chem_comp.formula_weight 473.923 _chem_comp.id 6Y7 _chem_comp.mon_nstd_flag . _chem_comp.name '3-[6-chloranyl-2-cyclopropyl-1-(1-ethylpyrazol-4-yl)-7-fluoranyl-indol-3-yl]sulfanyl-2-fluoranyl-benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C17 6Y7 doub 1 n n C17 O 6Y7 sing 2 n n C17 C16 6Y7 sing 3 n n C15 C16 6Y7 doub 4 n y C15 C14 6Y7 sing 5 n y C16 C18 6Y7 sing 6 n y C14 C13 6Y7 doub 7 n y C18 F1 6Y7 sing 8 n n C18 C12 6Y7 doub 9 n y C13 C12 6Y7 sing 10 n y C12 S 6Y7 sing 11 n n S C11 6Y7 sing 12 n n C8 C10 6Y7 sing 13 n n C8 C7 6Y7 sing 14 n n C8 C9 6Y7 sing 15 n n C11 C7 6Y7 doub 16 n y C11 C19 6Y7 sing 17 n y C10 C9 6Y7 sing 18 n n C7 N 6Y7 sing 19 n y C20 C19 6Y7 doub 20 n y C20 C21 6Y7 sing 21 n y C19 C1 6Y7 sing 22 n y N C1 6Y7 sing 23 n y N C2 6Y7 sing 24 n n C6 C2 6Y7 sing 25 n y C6 N2 6Y7 doub 26 n y C21 C22 6Y7 doub 27 n y C1 C 6Y7 doub 28 n y C2 C3 6Y7 doub 29 n y C22 C 6Y7 sing 30 n y C22 CL 6Y7 sing 31 n n C F 6Y7 sing 32 n n N2 N1 6Y7 sing 33 n y C3 N1 6Y7 sing 34 n y N1 C4 6Y7 sing 35 n n C4 C5 6Y7 sing 36 n n C4 H1 6Y7 sing 37 n n C4 H2 6Y7 sing 38 n n C6 H3 6Y7 sing 39 n n C8 H4 6Y7 sing 40 n n C9 H5 6Y7 sing 41 n n C9 H6 6Y7 sing 42 n n C10 H7 6Y7 sing 43 n n C10 H8 6Y7 sing 44 n n C13 H9 6Y7 sing 45 n n C21 H10 6Y7 sing 46 n n C20 H11 6Y7 sing 47 n n O H12 6Y7 sing 48 n n C15 H13 6Y7 sing 49 n n C14 H14 6Y7 sing 50 n n C3 H15 6Y7 sing 51 n n C5 H16 6Y7 sing 52 n n C5 H17 6Y7 sing 53 n n C5 H18 6Y7 sing 54 n n # _atom_sites.entry_id 5KXA _atom_sites.fract_transf_matrix[1][1] 0.018149 _atom_sites.fract_transf_matrix[1][2] -0.002847 _atom_sites.fract_transf_matrix[1][3] -0.002553 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018236 _atom_sites.fract_transf_matrix[2][3] -0.005672 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015187 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 901 901 NAG NAG . C 3 ZN A 1 902 1 ZN ZN . D 3 ZN A 1 903 2 ZN ZN . E 4 CA A 1 904 1 CA CA . F 5 6Y7 A 1 905 1 6Y7 505 . G 6 PO4 A 1 906 1 PO4 PO4 . H 7 HOH A 1 1001 1 HOH HOH . H 7 HOH A 2 1002 2 HOH HOH . H 7 HOH A 3 1003 5 HOH HOH . H 7 HOH A 4 1004 3 HOH HOH . H 7 HOH A 5 1005 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6Y7 . . . F 5 -39.306 26.446 -49.466 1 39.33 ? C1 6Y7 905 A 1 HETATM 2 C C2 6Y7 . . . F 5 -37.374 27.672 -48.965 1 52.92 ? C2 6Y7 905 A 1 HETATM 3 C C4 6Y7 . . . F 5 -35.091 27.754 -46.149 1 54.68 ? C4 6Y7 905 A 1 HETATM 4 C C6 6Y7 . . . F 5 -36.142 27.764 -49.597 1 53.17 ? C6 6Y7 905 A 1 HETATM 5 C C7 6Y7 . . . F 5 -39.139 28.476 -50.462 1 47.34 ? C7 6Y7 905 A 1 HETATM 6 C C8 6Y7 . . . F 5 -38.702 29.8 -50.931 1 51.18 ? C8 6Y7 905 A 1 HETATM 7 C C9 6Y7 . . . F 5 -38.468 30.858 -49.86 1 51.25 ? C9 6Y7 905 A 1 HETATM 8 C C10 6Y7 . . . F 5 -39.718 30.92 -50.755 1 52.8 ? C10 6Y7 905 A 1 HETATM 9 C C11 6Y7 . . . F 5 -40.394 27.845 -50.887 1 48.17 ? C11 6Y7 905 A 1 HETATM 10 C C12 6Y7 . . . F 5 -40.894 28.379 -53.56 1 55.64 ? C12 6Y7 905 A 1 HETATM 11 C C13 6Y7 . . . F 5 -39.862 27.488 -53.885 1 52.17 ? C13 6Y7 905 A 1 HETATM 12 CL CL 6Y7 . . . F 5 -39.843 22.718 -47.825 1 51.34 ? CL 6Y7 905 A 1 HETATM 13 C C22 6Y7 . . . F 5 -40.13 24.197 -48.765 1 42.83 ? C22 6Y7 905 A 1 HETATM 14 C C 6Y7 . . . F 5 -39.106 25.228 -48.689 1 39.72 ? C 6Y7 905 A 1 HETATM 15 F F 6Y7 . . . F 5 -38.07 24.991 -47.922 1 39.54 ? F 6Y7 905 A 1 HETATM 16 C C21 6Y7 . . . F 5 -41.255 24.367 -49.547 1 46.4 ? C21 6Y7 905 A 1 HETATM 17 C C20 6Y7 . . . F 5 -41.45 25.515 -50.308 1 45.39 ? C20 6Y7 905 A 1 HETATM 18 C C19 6Y7 . . . F 5 -40.518 26.528 -50.264 1 44.37 ? C19 6Y7 905 A 1 HETATM 19 S S 6Y7 . . . F 5 -41.554 28.527 -52.001 1 51.77 ? S 6Y7 905 A 1 HETATM 20 C C18 6Y7 . . . F 5 -41.448 29.247 -54.615 1 53.36 ? C18 6Y7 905 A 1 HETATM 21 F F1 6Y7 . . . F 5 -42.41 30.119 -54.351 1 57.3 ? F1 6Y7 905 A 1 HETATM 22 C C16 6Y7 . . . F 5 -40.928 29.169 -55.974 1 57.46 ? C16 6Y7 905 A 1 HETATM 23 C C17 6Y7 . . . F 5 -41.508 30.082 -57.025 1 57.03 ? C17 6Y7 905 A 1 HETATM 24 O O1 6Y7 . . . F 5 -41.26 29.92 -58.213 1 60.28 ? O1 6Y7 905 A 1 HETATM 25 O O 6Y7 . . . F 5 -42.285 31.111 -56.673 1 56.01 ? O 6Y7 905 A 1 HETATM 26 C C15 6Y7 . . . F 5 -39.884 28.268 -56.205 1 60.84 ? C15 6Y7 905 A 1 HETATM 27 C C14 6Y7 . . . F 5 -39.376 27.446 -55.189 1 56.97 ? C14 6Y7 905 A 1 HETATM 28 N N 6Y7 . . . F 5 -38.581 27.557 -49.616 1 45.01 ? N 6Y7 905 A 1 HETATM 29 N N2 6Y7 . . . F 5 -35.217 27.82 -48.617 1 52.12 ? N2 6Y7 905 A 1 HETATM 30 N N1 6Y7 . . . F 5 -35.906 27.748 -47.383 1 53.24 ? N1 6Y7 905 A 1 HETATM 31 C C3 6Y7 . . . F 5 -37.211 27.639 -47.585 1 54.17 ? C3 6Y7 905 A 1 HETATM 32 C C5 6Y7 . . . F 5 -35.009 29.105 -45.481 1 51.34 ? C5 6Y7 905 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #