data_5KXJ # _model_server_result.job_id w3Ze1ZvvLapyyBgZQt0UZw _model_server_result.datetime_utc '2024-12-10 18:04:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kxj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 5KXJ # _exptl.entry_id 5KXJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KXJ _cell.length_a 290.937 _cell.length_b 290.937 _cell.length_c 290.937 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KXJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 210 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,B,C,D,E,F,G,H,I,J,K,L 2 1,5 A,B,C,D,E,F,G,H,I,J,K,L 3 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 14_555 -y+1/4,-x+1/4,-z+1/4 0 -1 0 -1 0 0 0 0 -1 72.73425 72.73425 72.73425 5 'crystal symmetry operation' 19_555 -x+1/4,-z+1/4,-y+1/4 -1 0 0 0 0 -1 0 -1 0 72.73425 72.73425 72.73425 6 'crystal symmetry operation' 24_555 -z+1/4,-y+1/4,-x+1/4 0 0 -1 0 -1 0 -1 0 0 72.73425 72.73425 72.73425 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 J N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5KXJ _atom_sites.fract_transf_matrix[1][1] 0.003437 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 601 551 GOL GOL . C 2 GOL A 1 602 552 GOL GOL . D 2 GOL A 1 603 553 GOL GOL . E 3 EDO A 1 604 554 EDO EDO . F 3 EDO A 1 605 555 EDO EDO . G 3 EDO A 1 606 556 EDO EDO . H 3 EDO A 1 607 557 EDO EDO . I 4 SO4 A 1 608 558 SO4 SO4 . J 3 EDO A 1 609 560 EDO EDO . K 5 ASP A 1 610 561 ASP ASP . L 6 HOH A 1 701 150 HOH HOH . L 6 HOH A 2 702 237 HOH HOH . L 6 HOH A 3 703 228 HOH HOH . L 6 HOH A 4 704 216 HOH HOH . L 6 HOH A 5 705 242 HOH HOH . L 6 HOH A 6 706 140 HOH HOH . L 6 HOH A 7 707 130 HOH HOH . L 6 HOH A 8 708 158 HOH HOH . L 6 HOH A 9 709 1 HOH HOH . L 6 HOH A 10 710 189 HOH HOH . L 6 HOH A 11 711 170 HOH HOH . L 6 HOH A 12 712 97 HOH HOH . L 6 HOH A 13 713 221 HOH HOH . L 6 HOH A 14 714 92 HOH HOH . L 6 HOH A 15 715 111 HOH HOH . L 6 HOH A 16 716 80 HOH HOH . L 6 HOH A 17 717 233 HOH HOH . L 6 HOH A 18 718 136 HOH HOH . L 6 HOH A 19 719 122 HOH HOH . L 6 HOH A 20 720 52 HOH HOH . L 6 HOH A 21 721 14 HOH HOH . L 6 HOH A 22 722 246 HOH HOH . L 6 HOH A 23 723 100 HOH HOH . L 6 HOH A 24 724 109 HOH HOH . L 6 HOH A 25 725 218 HOH HOH . L 6 HOH A 26 726 64 HOH HOH . L 6 HOH A 27 727 208 HOH HOH . L 6 HOH A 28 728 43 HOH HOH . L 6 HOH A 29 729 245 HOH HOH . L 6 HOH A 30 730 17 HOH HOH . L 6 HOH A 31 731 113 HOH HOH . L 6 HOH A 32 732 186 HOH HOH . L 6 HOH A 33 733 75 HOH HOH . L 6 HOH A 34 734 77 HOH HOH . L 6 HOH A 35 735 161 HOH HOH . L 6 HOH A 36 736 241 HOH HOH . L 6 HOH A 37 737 73 HOH HOH . L 6 HOH A 38 738 116 HOH HOH . L 6 HOH A 39 739 5 HOH HOH . L 6 HOH A 40 740 7 HOH HOH . L 6 HOH A 41 741 11 HOH HOH . L 6 HOH A 42 742 41 HOH HOH . L 6 HOH A 43 743 144 HOH HOH . L 6 HOH A 44 744 115 HOH HOH . L 6 HOH A 45 745 101 HOH HOH . L 6 HOH A 46 746 56 HOH HOH . L 6 HOH A 47 747 159 HOH HOH . L 6 HOH A 48 748 15 HOH HOH . L 6 HOH A 49 749 60 HOH HOH . L 6 HOH A 50 750 30 HOH HOH . L 6 HOH A 51 751 214 HOH HOH . L 6 HOH A 52 752 226 HOH HOH . L 6 HOH A 53 753 125 HOH HOH . L 6 HOH A 54 754 57 HOH HOH . L 6 HOH A 55 755 151 HOH HOH . L 6 HOH A 56 756 31 HOH HOH . L 6 HOH A 57 757 227 HOH HOH . L 6 HOH A 58 758 40 HOH HOH . L 6 HOH A 59 759 22 HOH HOH . L 6 HOH A 60 760 13 HOH HOH . L 6 HOH A 61 761 146 HOH HOH . L 6 HOH A 62 762 138 HOH HOH . L 6 HOH A 63 763 238 HOH HOH . L 6 HOH A 64 764 8 HOH HOH . L 6 HOH A 65 765 36 HOH HOH . L 6 HOH A 66 766 174 HOH HOH . L 6 HOH A 67 767 166 HOH HOH . L 6 HOH A 68 768 82 HOH HOH . L 6 HOH A 69 769 16 HOH HOH . L 6 HOH A 70 770 19 HOH HOH . L 6 HOH A 71 771 25 HOH HOH . L 6 HOH A 72 772 45 HOH HOH . L 6 HOH A 73 773 123 HOH HOH . L 6 HOH A 74 774 81 HOH HOH . L 6 HOH A 75 775 59 HOH HOH . L 6 HOH A 76 776 32 HOH HOH . L 6 HOH A 77 777 168 HOH HOH . L 6 HOH A 78 778 187 HOH HOH . L 6 HOH A 79 779 55 HOH HOH . L 6 HOH A 80 780 61 HOH HOH . L 6 HOH A 81 781 84 HOH HOH . L 6 HOH A 82 782 142 HOH HOH . L 6 HOH A 83 783 201 HOH HOH . L 6 HOH A 84 784 47 HOH HOH . L 6 HOH A 85 785 167 HOH HOH . L 6 HOH A 86 786 87 HOH HOH . L 6 HOH A 87 787 9 HOH HOH . L 6 HOH A 88 788 217 HOH HOH . L 6 HOH A 89 789 38 HOH HOH . L 6 HOH A 90 790 72 HOH HOH . L 6 HOH A 91 791 108 HOH HOH . L 6 HOH A 92 792 44 HOH HOH . L 6 HOH A 93 793 172 HOH HOH . L 6 HOH A 94 794 18 HOH HOH . L 6 HOH A 95 795 76 HOH HOH . L 6 HOH A 96 796 33 HOH HOH . L 6 HOH A 97 797 129 HOH HOH . L 6 HOH A 98 798 83 HOH HOH . L 6 HOH A 99 799 28 HOH HOH . L 6 HOH A 100 800 145 HOH HOH . L 6 HOH A 101 801 42 HOH HOH . L 6 HOH A 102 802 49 HOH HOH . L 6 HOH A 103 803 39 HOH HOH . L 6 HOH A 104 804 35 HOH HOH . L 6 HOH A 105 805 4 HOH HOH . L 6 HOH A 106 806 114 HOH HOH . L 6 HOH A 107 807 118 HOH HOH . L 6 HOH A 108 808 51 HOH HOH . L 6 HOH A 109 809 171 HOH HOH . L 6 HOH A 110 810 53 HOH HOH . L 6 HOH A 111 811 68 HOH HOH . L 6 HOH A 112 812 155 HOH HOH . L 6 HOH A 113 813 157 HOH HOH . L 6 HOH A 114 814 74 HOH HOH . L 6 HOH A 115 815 190 HOH HOH . L 6 HOH A 116 816 12 HOH HOH . L 6 HOH A 117 817 196 HOH HOH . L 6 HOH A 118 818 205 HOH HOH . L 6 HOH A 119 819 54 HOH HOH . L 6 HOH A 120 820 27 HOH HOH . L 6 HOH A 121 821 139 HOH HOH . L 6 HOH A 122 822 193 HOH HOH . L 6 HOH A 123 823 232 HOH HOH . L 6 HOH A 124 824 188 HOH HOH . L 6 HOH A 125 825 6 HOH HOH . L 6 HOH A 126 826 20 HOH HOH . L 6 HOH A 127 827 195 HOH HOH . L 6 HOH A 128 828 78 HOH HOH . L 6 HOH A 129 829 63 HOH HOH . L 6 HOH A 130 830 177 HOH HOH . L 6 HOH A 131 831 243 HOH HOH . L 6 HOH A 132 832 127 HOH HOH . L 6 HOH A 133 833 234 HOH HOH . L 6 HOH A 134 834 10 HOH HOH . L 6 HOH A 135 835 112 HOH HOH . L 6 HOH A 136 836 210 HOH HOH . L 6 HOH A 137 837 88 HOH HOH . L 6 HOH A 138 838 147 HOH HOH . L 6 HOH A 139 839 21 HOH HOH . L 6 HOH A 140 840 206 HOH HOH . L 6 HOH A 141 841 128 HOH HOH . L 6 HOH A 142 842 89 HOH HOH . L 6 HOH A 143 843 137 HOH HOH . L 6 HOH A 144 844 2 HOH HOH . L 6 HOH A 145 845 160 HOH HOH . L 6 HOH A 146 846 29 HOH HOH . L 6 HOH A 147 847 67 HOH HOH . L 6 HOH A 148 848 231 HOH HOH . L 6 HOH A 149 849 121 HOH HOH . L 6 HOH A 150 850 23 HOH HOH . L 6 HOH A 151 851 65 HOH HOH . L 6 HOH A 152 852 200 HOH HOH . L 6 HOH A 153 853 178 HOH HOH . L 6 HOH A 154 854 85 HOH HOH . L 6 HOH A 155 855 191 HOH HOH . L 6 HOH A 156 856 37 HOH HOH . L 6 HOH A 157 857 24 HOH HOH . L 6 HOH A 158 858 46 HOH HOH . L 6 HOH A 159 859 179 HOH HOH . L 6 HOH A 160 860 220 HOH HOH . L 6 HOH A 161 861 154 HOH HOH . L 6 HOH A 162 862 107 HOH HOH . L 6 HOH A 163 863 103 HOH HOH . L 6 HOH A 164 864 95 HOH HOH . L 6 HOH A 165 865 247 HOH HOH . L 6 HOH A 166 866 91 HOH HOH . L 6 HOH A 167 867 194 HOH HOH . L 6 HOH A 168 868 48 HOH HOH . L 6 HOH A 169 869 192 HOH HOH . L 6 HOH A 170 870 26 HOH HOH . L 6 HOH A 171 871 69 HOH HOH . L 6 HOH A 172 872 58 HOH HOH . L 6 HOH A 173 873 104 HOH HOH . L 6 HOH A 174 874 133 HOH HOH . L 6 HOH A 175 875 120 HOH HOH . L 6 HOH A 176 876 176 HOH HOH . L 6 HOH A 177 877 236 HOH HOH . L 6 HOH A 178 878 199 HOH HOH . L 6 HOH A 179 879 148 HOH HOH . L 6 HOH A 180 880 71 HOH HOH . L 6 HOH A 181 881 50 HOH HOH . L 6 HOH A 182 882 135 HOH HOH . L 6 HOH A 183 883 203 HOH HOH . L 6 HOH A 184 884 207 HOH HOH . L 6 HOH A 185 885 175 HOH HOH . L 6 HOH A 186 886 124 HOH HOH . L 6 HOH A 187 887 134 HOH HOH . L 6 HOH A 188 888 181 HOH HOH . L 6 HOH A 189 889 99 HOH HOH . L 6 HOH A 190 890 204 HOH HOH . L 6 HOH A 191 891 197 HOH HOH . L 6 HOH A 192 892 202 HOH HOH . L 6 HOH A 193 893 230 HOH HOH . L 6 HOH A 194 894 209 HOH HOH . L 6 HOH A 195 895 93 HOH HOH . L 6 HOH A 196 896 96 HOH HOH . L 6 HOH A 197 897 98 HOH HOH . L 6 HOH A 198 898 70 HOH HOH . L 6 HOH A 199 899 165 HOH HOH . L 6 HOH A 200 900 229 HOH HOH . L 6 HOH A 201 901 162 HOH HOH . L 6 HOH A 202 902 213 HOH HOH . L 6 HOH A 203 903 3 HOH HOH . L 6 HOH A 204 904 211 HOH HOH . L 6 HOH A 205 905 141 HOH HOH . L 6 HOH A 206 906 219 HOH HOH . L 6 HOH A 207 907 169 HOH HOH . L 6 HOH A 208 908 239 HOH HOH . L 6 HOH A 209 909 105 HOH HOH . L 6 HOH A 210 910 79 HOH HOH . L 6 HOH A 211 911 90 HOH HOH . L 6 HOH A 212 912 164 HOH HOH . L 6 HOH A 213 913 126 HOH HOH . L 6 HOH A 214 914 185 HOH HOH . L 6 HOH A 215 915 183 HOH HOH . L 6 HOH A 216 916 212 HOH HOH . L 6 HOH A 217 917 117 HOH HOH . L 6 HOH A 218 918 66 HOH HOH . L 6 HOH A 219 919 235 HOH HOH . L 6 HOH A 220 920 163 HOH HOH . L 6 HOH A 221 921 223 HOH HOH . L 6 HOH A 222 922 215 HOH HOH . L 6 HOH A 223 923 132 HOH HOH . L 6 HOH A 224 924 143 HOH HOH . L 6 HOH A 225 925 222 HOH HOH . L 6 HOH A 226 926 156 HOH HOH . L 6 HOH A 227 927 153 HOH HOH . L 6 HOH A 228 928 62 HOH HOH . L 6 HOH A 229 929 198 HOH HOH . L 6 HOH A 230 930 102 HOH HOH . L 6 HOH A 231 931 86 HOH HOH . L 6 HOH A 232 932 173 HOH HOH . L 6 HOH A 233 933 182 HOH HOH . L 6 HOH A 234 934 184 HOH HOH . L 6 HOH A 235 935 225 HOH HOH . L 6 HOH A 236 936 180 HOH HOH . L 6 HOH A 237 937 131 HOH HOH . L 6 HOH A 238 938 244 HOH HOH . L 6 HOH A 239 939 152 HOH HOH . L 6 HOH A 240 940 224 HOH HOH . L 6 HOH A 241 941 94 HOH HOH . L 6 HOH A 242 942 110 HOH HOH . L 6 HOH A 243 943 119 HOH HOH . L 6 HOH A 244 944 106 HOH HOH . L 6 HOH A 245 945 240 HOH HOH . L 6 HOH A 246 946 34 HOH HOH . L 6 HOH A 247 947 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 30.829 23.802 -19.562 1 36.58 ? C1 EDO 604 A 1 HETATM 2 O O1 EDO . . . E 3 31.085 23.641 -20.968 1 41.78 ? O1 EDO 604 A 1 HETATM 3 C C2 EDO . . . E 3 30.752 25.301 -19.26 1 34.56 ? C2 EDO 604 A 1 HETATM 4 O O2 EDO . . . E 3 29.524 25.846 -19.781 1 29.07 ? O2 EDO 604 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #