data_5KXL # _model_server_result.job_id ZYytyqadyMwwUzygNHAPOg _model_server_result.datetime_utc '2024-11-15 06:49:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kxl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5KXL # _exptl.entry_id 5KXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KXL _cell.length_a 77.312 _cell.length_b 77.312 _cell.length_c 37.213 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.099 ? disulf ? disulf4 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.072 ? disulf ? disulf6 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf7 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.993 ? metalc ? metalc1 A OE1 GLU 35 A GLU 35 1_555 F NA NA . A NA 205 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc2 A OE1 GLU 35 A GLU 35 1_555 F NA NA . A NA 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc3 A OE1 GLU 35 A GLU 35 1_555 F NA NA . A NA 205 1_555 ? C ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc4 A O SER 60 A SER 60 1_555 E NA NA . A NA 204 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc5 A O SER 60 A SER 60 1_555 E NA NA . A NA 204 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc6 A O SER 60 A SER 60 1_555 E NA NA . A NA 204 1_555 ? C ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc7 A O CYS 64 A CYS 64 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc8 A OG SER 72 A SER 72 1_555 E NA NA . A NA 204 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc9 A OG SER 72 A SER 72 1_555 E NA NA . A NA 204 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc10 A O ARG 73 A ARG 73 1_555 E NA NA . A NA 204 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc11 A O ARG 73 A ARG 73 1_555 E NA NA . A NA 204 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc12 E NA NA . A NA 204 1_555 H O HOH . A HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc13 E NA NA . A NA 204 1_555 H O HOH . A HOH 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc14 F NA NA . A NA 205 1_555 H O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc15 F NA NA . A NA 205 1_555 H O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc16 F NA NA . A NA 205 1_555 H O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc17 F NA NA . A NA 205 1_555 H O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KXL _atom_sites.fract_transf_matrix[1][1] 0.012935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 1 CL CL . C 2 CL A 1 202 2 CL CL . D 2 CL A 1 203 3 CL CL . E 3 NA A 1 204 1 NA NA . F 3 NA A 1 205 2 NA NA . G 4 ACT A 1 206 1 ACT ACT . H 5 HOH A 1 301 62 HOH HOH . H 5 HOH A 2 302 66 HOH HOH . H 5 HOH A 3 303 41 HOH HOH . H 5 HOH A 4 304 55 HOH HOH . H 5 HOH A 5 305 16 HOH HOH . H 5 HOH A 6 306 2009 HOH HOH . H 5 HOH A 7 307 2 HOH HOH . H 5 HOH A 8 308 46 HOH HOH . H 5 HOH A 9 309 2076 HOH HOH . H 5 HOH A 10 310 2081 HOH HOH . H 5 HOH A 11 311 2080 HOH HOH . H 5 HOH A 12 312 56 HOH HOH . H 5 HOH A 13 313 2109 HOH HOH . H 5 HOH A 14 314 2079 HOH HOH . H 5 HOH A 15 315 49 HOH HOH . H 5 HOH A 16 316 79 HOH HOH . H 5 HOH A 17 317 2030 HOH HOH . H 5 HOH A 18 318 2085 HOH HOH . H 5 HOH A 19 319 2106 HOH HOH . H 5 HOH A 20 320 65 HOH HOH . H 5 HOH A 21 321 2042 HOH HOH . H 5 HOH A 22 322 61 HOH HOH . H 5 HOH A 23 323 52 HOH HOH . H 5 HOH A 24 324 12 HOH HOH . H 5 HOH A 25 325 2062 HOH HOH . H 5 HOH A 26 326 24 HOH HOH . H 5 HOH A 27 327 73 HOH HOH . H 5 HOH A 28 328 2086 HOH HOH . H 5 HOH A 29 329 58 HOH HOH . H 5 HOH A 30 330 2003 HOH HOH . H 5 HOH A 31 331 2074 HOH HOH . H 5 HOH A 32 332 2103 HOH HOH . H 5 HOH A 33 333 2008 HOH HOH . H 5 HOH A 34 334 2091 HOH HOH . H 5 HOH A 35 335 2012 HOH HOH . H 5 HOH A 36 336 21 HOH HOH . H 5 HOH A 37 337 2096 HOH HOH . H 5 HOH A 38 338 9 HOH HOH . H 5 HOH A 39 339 2102 HOH HOH . H 5 HOH A 40 340 2052 HOH HOH . H 5 HOH A 41 341 2037 HOH HOH . H 5 HOH A 42 342 76 HOH HOH . H 5 HOH A 43 343 54 HOH HOH . H 5 HOH A 44 344 2075 HOH HOH . H 5 HOH A 45 345 2077 HOH HOH . H 5 HOH A 46 346 2027 HOH HOH . H 5 HOH A 47 347 2057 HOH HOH . H 5 HOH A 48 348 2031 HOH HOH . H 5 HOH A 49 349 75 HOH HOH . H 5 HOH A 50 350 68 HOH HOH . H 5 HOH A 51 351 2058 HOH HOH . H 5 HOH A 52 352 2034 HOH HOH . H 5 HOH A 53 353 40 HOH HOH . H 5 HOH A 54 354 2061 HOH HOH . H 5 HOH A 55 355 2050 HOH HOH . H 5 HOH A 56 356 13 HOH HOH . H 5 HOH A 57 357 2001 HOH HOH . H 5 HOH A 58 358 2090 HOH HOH . H 5 HOH A 59 359 3 HOH HOH . H 5 HOH A 60 360 2053 HOH HOH . H 5 HOH A 61 361 2020 HOH HOH . H 5 HOH A 62 362 71 HOH HOH . H 5 HOH A 63 363 2036 HOH HOH . H 5 HOH A 64 364 2098 HOH HOH . H 5 HOH A 65 365 2025 HOH HOH . H 5 HOH A 66 366 19 HOH HOH . H 5 HOH A 67 367 2066 HOH HOH . H 5 HOH A 68 368 2018 HOH HOH . H 5 HOH A 69 369 64 HOH HOH . H 5 HOH A 70 370 2078 HOH HOH . H 5 HOH A 71 371 8 HOH HOH . H 5 HOH A 72 372 2071 HOH HOH . H 5 HOH A 73 373 2083 HOH HOH . H 5 HOH A 74 374 72 HOH HOH . H 5 HOH A 75 375 2048 HOH HOH . H 5 HOH A 76 376 2111 HOH HOH . H 5 HOH A 77 377 2088 HOH HOH . H 5 HOH A 78 378 2104 HOH HOH . H 5 HOH A 79 379 2097 HOH HOH . H 5 HOH A 80 380 2005 HOH HOH . H 5 HOH A 81 381 2067 HOH HOH . H 5 HOH A 82 382 2099 HOH HOH . H 5 HOH A 83 383 47 HOH HOH . H 5 HOH A 84 384 50 HOH HOH . H 5 HOH A 85 385 42 HOH HOH . H 5 HOH A 86 386 2011 HOH HOH . H 5 HOH A 87 387 2112 HOH HOH . H 5 HOH A 88 388 2082 HOH HOH . H 5 HOH A 89 389 45 HOH HOH . H 5 HOH A 90 390 2107 HOH HOH . H 5 HOH A 91 391 2089 HOH HOH . H 5 HOH A 92 392 2105 HOH HOH . H 5 HOH A 93 393 2073 HOH HOH . H 5 HOH A 94 394 2059 HOH HOH . H 5 HOH A 95 395 2019 HOH HOH . H 5 HOH A 96 396 77 HOH HOH . H 5 HOH A 97 397 2002 HOH HOH . H 5 HOH A 98 398 69 HOH HOH . H 5 HOH A 99 399 25 HOH HOH . H 5 HOH A 100 400 2095 HOH HOH . H 5 HOH A 101 401 70 HOH HOH . H 5 HOH A 102 402 2046 HOH HOH . H 5 HOH A 103 403 18 HOH HOH . H 5 HOH A 104 404 2063 HOH HOH . H 5 HOH A 105 405 2087 HOH HOH . H 5 HOH A 106 406 83 HOH HOH . H 5 HOH A 107 407 2060 HOH HOH . H 5 HOH A 108 408 2014 HOH HOH . H 5 HOH A 109 409 2006 HOH HOH . H 5 HOH A 110 410 82 HOH HOH . H 5 HOH A 111 411 78 HOH HOH . H 5 HOH A 112 412 2070 HOH HOH . H 5 HOH A 113 413 2010 HOH HOH . H 5 HOH A 114 414 2047 HOH HOH . H 5 HOH A 115 415 2100 HOH HOH . H 5 HOH A 116 416 2113 HOH HOH . H 5 HOH A 117 417 2035 HOH HOH . H 5 HOH A 118 418 1 HOH HOH . H 5 HOH A 119 419 2069 HOH HOH . H 5 HOH A 120 420 34 HOH HOH . H 5 HOH A 121 421 2004 HOH HOH . H 5 HOH A 122 422 2013 HOH HOH . H 5 HOH A 123 423 2084 HOH HOH . H 5 HOH A 124 424 63 HOH HOH . H 5 HOH A 125 425 37 HOH HOH . H 5 HOH A 126 426 43 HOH HOH . H 5 HOH A 127 427 27 HOH HOH . H 5 HOH A 128 428 5 HOH HOH . H 5 HOH A 129 429 2101 HOH HOH . H 5 HOH A 130 430 33 HOH HOH . H 5 HOH A 131 431 2028 HOH HOH . H 5 HOH A 132 432 59 HOH HOH . H 5 HOH A 133 433 81 HOH HOH . H 5 HOH A 134 434 53 HOH HOH . H 5 HOH A 135 435 35 HOH HOH . H 5 HOH A 136 436 2039 HOH HOH . H 5 HOH A 137 437 4 HOH HOH . H 5 HOH A 138 438 80 HOH HOH . H 5 HOH A 139 439 2040 HOH HOH . H 5 HOH A 140 440 57 HOH HOH . H 5 HOH A 141 441 22 HOH HOH . H 5 HOH A 142 442 31 HOH HOH . H 5 HOH A 143 443 60 HOH HOH . H 5 HOH A 144 444 2038 HOH HOH . H 5 HOH A 145 445 11 HOH HOH . H 5 HOH A 146 446 51 HOH HOH . H 5 HOH A 147 447 30 HOH HOH . H 5 HOH A 148 448 26 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 6.855 _atom_site.Cartn_y 23.105 _atom_site.Cartn_z 19.664 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.69 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 205 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 638 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #