data_5KXM # _model_server_result.job_id iWsnWHP2N5yvNZ_GVDNr9g _model_server_result.datetime_utc '2024-11-15 08:01:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kxm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 5KXM # _exptl.entry_id 5KXM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KXM _cell.length_a 77.289 _cell.length_b 77.289 _cell.length_c 37.205 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KXM _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.083 ? disulf ? disulf3 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.069 ? disulf ? disulf4 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.049 ? disulf ? disulf5 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.073 ? disulf ? disulf7 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.814 ? disulf ? disulf8 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.973 ? metalc ? metalc1 A OE1 GLU 35 A GLU 35 1_555 C NA NA . A NA 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc2 A OE1 GLU 35 A GLU 35 1_555 C NA NA . A NA 202 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc3 A OD2 ASP 52 A ASP 52 1_555 C NA NA . A NA 202 1_555 ? B ? ? ? ? ? ? ? ? ? ? 3.151 ? metalc ? metalc4 A O SER 60 A SER 60 1_555 B NA NA . A NA 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc5 A O SER 60 A SER 60 1_555 B NA NA . A NA 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc6 A O CYS 64 A CYS 64 1_555 B NA NA . A NA 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc7 A O CYS 64 A CYS 64 1_555 B NA NA . A NA 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc8 A OG SER 72 A SER 72 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc9 A O ARG 73 A ARG 73 1_555 B NA NA . A NA 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc10 A O ARG 73 A ARG 73 1_555 B NA NA . A NA 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc11 A O ARG 73 A ARG 73 1_555 B NA NA . A NA 201 1_555 ? C ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc12 B NA NA . A NA 201 1_555 H O HOH . A HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc13 B NA NA . A NA 201 1_555 H O HOH . A HOH 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc14 C NA NA . A NA 202 1_555 H O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc15 C NA NA . A NA 202 1_555 H O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc16 C NA NA . A NA 202 1_555 H O HOH . A HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc17 C NA NA . A NA 202 1_555 H O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5KXM _atom_sites.fract_transf_matrix[1][1] 0.012938 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 1 NA NA . C 2 NA A 1 202 2 NA NA . D 3 CL A 1 203 2 CL CL . E 3 CL A 1 204 3 CL CL . F 3 CL A 1 205 4 CL CL . G 4 ACT A 1 206 1 ACT ACT . H 5 HOH A 1 301 73 HOH HOH . H 5 HOH A 2 302 2087 HOH HOH . H 5 HOH A 3 303 20 HOH HOH . H 5 HOH A 4 304 68 HOH HOH . H 5 HOH A 5 305 53 HOH HOH . H 5 HOH A 6 306 52 HOH HOH . H 5 HOH A 7 307 70 HOH HOH . H 5 HOH A 8 308 2009 HOH HOH . H 5 HOH A 9 309 31 HOH HOH . H 5 HOH A 10 310 2032 HOH HOH . H 5 HOH A 11 311 30 HOH HOH . H 5 HOH A 12 312 41 HOH HOH . H 5 HOH A 13 313 47 HOH HOH . H 5 HOH A 14 314 2076 HOH HOH . H 5 HOH A 15 315 61 HOH HOH . H 5 HOH A 16 316 2077 HOH HOH . H 5 HOH A 17 317 2042 HOH HOH . H 5 HOH A 18 318 2081 HOH HOH . H 5 HOH A 19 319 2109 HOH HOH . H 5 HOH A 20 320 2079 HOH HOH . H 5 HOH A 21 321 2048 HOH HOH . H 5 HOH A 22 322 2008 HOH HOH . H 5 HOH A 23 323 51 HOH HOH . H 5 HOH A 24 324 2080 HOH HOH . H 5 HOH A 25 325 56 HOH HOH . H 5 HOH A 26 326 19 HOH HOH . H 5 HOH A 27 327 59 HOH HOH . H 5 HOH A 28 328 72 HOH HOH . H 5 HOH A 29 329 2078 HOH HOH . H 5 HOH A 30 330 81 HOH HOH . H 5 HOH A 31 331 14 HOH HOH . H 5 HOH A 32 332 2062 HOH HOH . H 5 HOH A 33 333 2106 HOH HOH . H 5 HOH A 34 334 2059 HOH HOH . H 5 HOH A 35 335 2102 HOH HOH . H 5 HOH A 36 336 2003 HOH HOH . H 5 HOH A 37 337 2091 HOH HOH . H 5 HOH A 38 338 75 HOH HOH . H 5 HOH A 39 339 2061 HOH HOH . H 5 HOH A 40 340 2103 HOH HOH . H 5 HOH A 41 341 2096 HOH HOH . H 5 HOH A 42 342 2053 HOH HOH . H 5 HOH A 43 343 2037 HOH HOH . H 5 HOH A 44 344 7 HOH HOH . H 5 HOH A 45 345 18 HOH HOH . H 5 HOH A 46 346 2049 HOH HOH . H 5 HOH A 47 347 13 HOH HOH . H 5 HOH A 48 348 2075 HOH HOH . H 5 HOH A 49 349 60 HOH HOH . H 5 HOH A 50 350 2057 HOH HOH . H 5 HOH A 51 351 2007 HOH HOH . H 5 HOH A 52 352 28 HOH HOH . H 5 HOH A 53 353 2110 HOH HOH . H 5 HOH A 54 354 2 HOH HOH . H 5 HOH A 55 355 2086 HOH HOH . H 5 HOH A 56 356 2001 HOH HOH . H 5 HOH A 57 357 2090 HOH HOH . H 5 HOH A 58 358 6 HOH HOH . H 5 HOH A 59 359 71 HOH HOH . H 5 HOH A 60 360 34 HOH HOH . H 5 HOH A 61 361 2052 HOH HOH . H 5 HOH A 62 362 2089 HOH HOH . H 5 HOH A 63 363 2005 HOH HOH . H 5 HOH A 64 364 2020 HOH HOH . H 5 HOH A 65 365 2034 HOH HOH . H 5 HOH A 66 366 2025 HOH HOH . H 5 HOH A 67 367 35 HOH HOH . H 5 HOH A 68 368 2031 HOH HOH . H 5 HOH A 69 369 2111 HOH HOH . H 5 HOH A 70 370 32 HOH HOH . H 5 HOH A 71 371 2066 HOH HOH . H 5 HOH A 72 372 2030 HOH HOH . H 5 HOH A 73 373 74 HOH HOH . H 5 HOH A 74 374 2085 HOH HOH . H 5 HOH A 75 375 21 HOH HOH . H 5 HOH A 76 376 2014 HOH HOH . H 5 HOH A 77 377 2071 HOH HOH . H 5 HOH A 78 378 22 HOH HOH . H 5 HOH A 79 379 2027 HOH HOH . H 5 HOH A 80 380 27 HOH HOH . H 5 HOH A 81 381 2105 HOH HOH . H 5 HOH A 82 382 49 HOH HOH . H 5 HOH A 83 383 2098 HOH HOH . H 5 HOH A 84 384 2058 HOH HOH . H 5 HOH A 85 385 2112 HOH HOH . H 5 HOH A 86 386 33 HOH HOH . H 5 HOH A 87 387 2036 HOH HOH . H 5 HOH A 88 388 2113 HOH HOH . H 5 HOH A 89 389 55 HOH HOH . H 5 HOH A 90 390 54 HOH HOH . H 5 HOH A 91 391 2011 HOH HOH . H 5 HOH A 92 392 10 HOH HOH . H 5 HOH A 93 393 2104 HOH HOH . H 5 HOH A 94 394 2097 HOH HOH . H 5 HOH A 95 395 64 HOH HOH . H 5 HOH A 96 396 2002 HOH HOH . H 5 HOH A 97 397 2083 HOH HOH . H 5 HOH A 98 398 2050 HOH HOH . H 5 HOH A 99 399 2099 HOH HOH . H 5 HOH A 100 400 44 HOH HOH . H 5 HOH A 101 401 46 HOH HOH . H 5 HOH A 102 402 2067 HOH HOH . H 5 HOH A 103 403 2093 HOH HOH . H 5 HOH A 104 404 2004 HOH HOH . H 5 HOH A 105 405 2073 HOH HOH . H 5 HOH A 106 406 2082 HOH HOH . H 5 HOH A 107 407 2026 HOH HOH . H 5 HOH A 108 408 2114 HOH HOH . H 5 HOH A 109 409 80 HOH HOH . H 5 HOH A 110 410 69 HOH HOH . H 5 HOH A 111 411 2074 HOH HOH . H 5 HOH A 112 412 2088 HOH HOH . H 5 HOH A 113 413 57 HOH HOH . H 5 HOH A 114 414 2063 HOH HOH . H 5 HOH A 115 415 2019 HOH HOH . H 5 HOH A 116 416 2046 HOH HOH . H 5 HOH A 117 417 2060 HOH HOH . H 5 HOH A 118 418 58 HOH HOH . H 5 HOH A 119 419 2070 HOH HOH . H 5 HOH A 120 420 2006 HOH HOH . H 5 HOH A 121 421 2107 HOH HOH . H 5 HOH A 122 422 62 HOH HOH . H 5 HOH A 123 423 2010 HOH HOH . H 5 HOH A 124 424 50 HOH HOH . H 5 HOH A 125 425 2012 HOH HOH . H 5 HOH A 126 426 2047 HOH HOH . H 5 HOH A 127 427 2035 HOH HOH . H 5 HOH A 128 428 2068 HOH HOH . H 5 HOH A 129 429 2095 HOH HOH . H 5 HOH A 130 430 2069 HOH HOH . H 5 HOH A 131 431 5 HOH HOH . H 5 HOH A 132 432 26 HOH HOH . H 5 HOH A 133 433 2013 HOH HOH . H 5 HOH A 134 434 37 HOH HOH . H 5 HOH A 135 435 2084 HOH HOH . H 5 HOH A 136 436 82 HOH HOH . H 5 HOH A 137 437 76 HOH HOH . H 5 HOH A 138 438 2028 HOH HOH . H 5 HOH A 139 439 11 HOH HOH . H 5 HOH A 140 440 9 HOH HOH . H 5 HOH A 141 441 2101 HOH HOH . H 5 HOH A 142 442 40 HOH HOH . H 5 HOH A 143 443 79 HOH HOH . H 5 HOH A 144 444 2039 HOH HOH . H 5 HOH A 145 445 48 HOH HOH . H 5 HOH A 146 446 4 HOH HOH . H 5 HOH A 147 447 42 HOH HOH . H 5 HOH A 148 448 2040 HOH HOH . H 5 HOH A 149 449 65 HOH HOH . H 5 HOH A 150 450 63 HOH HOH . H 5 HOH A 151 451 43 HOH HOH . H 5 HOH A 152 452 36 HOH HOH . H 5 HOH A 153 453 78 HOH HOH . H 5 HOH A 154 454 67 HOH HOH . H 5 HOH A 155 455 2038 HOH HOH . H 5 HOH A 156 456 77 HOH HOH . H 5 HOH A 157 457 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . G 4 2.654 21.674 25.151 1 24.43 ? C ACT 206 A 1 HETATM 2 O O ACT . . . G 4 2.943 20.516 25.547 1 20.85 ? O ACT 206 A 1 HETATM 3 O OXT ACT . . . G 4 2.613 22.673 25.954 1 26.09 ? OXT ACT 206 A 1 HETATM 4 C CH3 ACT . . . G 4 1.924 21.893 23.841 1 25.13 ? CH3 ACT 206 A 1 HETATM 5 H H1 ACT . . . G 4 0.879 21.979 24.019 1 30.15 ? H1 ACT 206 A 1 HETATM 6 H H2 ACT . . . G 4 2.033 21.114 23.112 1 30.15 ? H2 ACT 206 A 1 HETATM 7 H H3 ACT . . . G 4 2.242 22.767 23.308 1 30.15 ? H3 ACT 206 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 436 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #