data_5KXP # _model_server_result.job_id icYZVBwSkKqeH6oS0KjT_A _model_server_result.datetime_utc '2024-11-15 06:53:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kxp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5KXP # _exptl.entry_id 5KXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KXP _cell.length_a 79.145 _cell.length_b 79.145 _cell.length_c 37.951 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.086 ? disulf ? disulf3 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.161 ? disulf ? disulf4 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.02 ? disulf ? disulf6 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.08 ? disulf ? disulf7 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.007 ? disulf ? disulf9 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.017 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 B NA NA . A NA 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc2 A O SER 60 A SER 60 1_555 B NA NA . A NA 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc3 A O SER 60 A SER 60 1_555 B NA NA . A NA 201 1_555 ? C ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 A O CYS 64 A CYS 64 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc5 A OG SER 72 A SER 72 1_555 B NA NA . A NA 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc6 A OG SER 72 A SER 72 1_555 B NA NA . A NA 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc7 A O ARG 73 A ARG 73 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc8 B NA NA . A NA 201 1_555 C O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc9 B NA NA . A NA 201 1_555 C O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KXP _atom_sites.fract_transf_matrix[1][1] 0.012635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012635 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 1 NA NA . C 3 HOH A 1 301 172 HOH HOH . C 3 HOH A 2 302 188 HOH HOH . C 3 HOH A 3 303 182 HOH HOH . C 3 HOH A 4 304 166 HOH HOH . C 3 HOH A 5 305 164 HOH HOH . C 3 HOH A 6 306 205 HOH HOH . C 3 HOH A 7 307 154 HOH HOH . C 3 HOH A 8 308 143 HOH HOH . C 3 HOH A 9 309 150 HOH HOH . C 3 HOH A 10 310 181 HOH HOH . C 3 HOH A 11 311 160 HOH HOH . C 3 HOH A 12 312 173 HOH HOH . C 3 HOH A 13 313 174 HOH HOH . C 3 HOH A 14 314 179 HOH HOH . C 3 HOH A 15 315 138 HOH HOH . C 3 HOH A 16 316 162 HOH HOH . C 3 HOH A 17 317 159 HOH HOH . C 3 HOH A 18 318 165 HOH HOH . C 3 HOH A 19 319 211 HOH HOH . C 3 HOH A 20 320 167 HOH HOH . C 3 HOH A 21 321 207 HOH HOH . C 3 HOH A 22 322 180 HOH HOH . C 3 HOH A 23 323 198 HOH HOH . C 3 HOH A 24 324 152 HOH HOH . C 3 HOH A 25 325 131 HOH HOH . C 3 HOH A 26 326 195 HOH HOH . C 3 HOH A 27 327 146 HOH HOH . C 3 HOH A 28 328 192 HOH HOH . C 3 HOH A 29 329 191 HOH HOH . C 3 HOH A 30 330 186 HOH HOH . C 3 HOH A 31 331 175 HOH HOH . C 3 HOH A 32 332 206 HOH HOH . C 3 HOH A 33 333 208 HOH HOH . C 3 HOH A 34 334 210 HOH HOH . C 3 HOH A 35 335 163 HOH HOH . C 3 HOH A 36 336 140 HOH HOH . C 3 HOH A 37 337 151 HOH HOH . C 3 HOH A 38 338 209 HOH HOH . C 3 HOH A 39 339 171 HOH HOH . C 3 HOH A 40 340 141 HOH HOH . C 3 HOH A 41 341 133 HOH HOH . C 3 HOH A 42 342 184 HOH HOH . C 3 HOH A 43 343 190 HOH HOH . C 3 HOH A 44 344 168 HOH HOH . C 3 HOH A 45 345 153 HOH HOH . C 3 HOH A 46 346 189 HOH HOH . C 3 HOH A 47 347 197 HOH HOH . C 3 HOH A 48 348 142 HOH HOH . C 3 HOH A 49 349 170 HOH HOH . C 3 HOH A 50 350 202 HOH HOH . C 3 HOH A 51 351 139 HOH HOH . C 3 HOH A 52 352 177 HOH HOH . C 3 HOH A 53 353 199 HOH HOH . C 3 HOH A 54 354 145 HOH HOH . C 3 HOH A 55 355 144 HOH HOH . C 3 HOH A 56 356 158 HOH HOH . C 3 HOH A 57 357 196 HOH HOH . C 3 HOH A 58 358 203 HOH HOH . C 3 HOH A 59 359 136 HOH HOH . C 3 HOH A 60 360 187 HOH HOH . C 3 HOH A 61 361 137 HOH HOH . C 3 HOH A 62 362 176 HOH HOH . C 3 HOH A 63 363 149 HOH HOH . C 3 HOH A 64 364 185 HOH HOH . C 3 HOH A 65 365 156 HOH HOH . C 3 HOH A 66 366 130 HOH HOH . C 3 HOH A 67 367 200 HOH HOH . C 3 HOH A 68 368 204 HOH HOH . C 3 HOH A 69 369 194 HOH HOH . C 3 HOH A 70 370 193 HOH HOH . C 3 HOH A 71 371 183 HOH HOH . C 3 HOH A 72 372 212 HOH HOH . C 3 HOH A 73 373 213 HOH HOH . C 3 HOH A 74 374 161 HOH HOH . C 3 HOH A 75 375 157 HOH HOH . C 3 HOH A 76 376 132 HOH HOH . C 3 HOH A 77 377 169 HOH HOH . C 3 HOH A 78 378 155 HOH HOH . C 3 HOH A 79 379 201 HOH HOH . C 3 HOH A 80 380 178 HOH HOH . C 3 HOH A 81 381 134 HOH HOH . C 3 HOH A 82 382 147 HOH HOH . C 3 HOH A 83 383 135 HOH HOH . C 3 HOH A 84 384 148 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 7.933 _atom_site.Cartn_y 14.465 _atom_site.Cartn_z 31.847 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #