data_5KY7 # _model_server_result.job_id Mq6YrsD61xX1PaB1LoCDFw _model_server_result.datetime_utc '2024-10-11 21:46:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ky7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 5KY7 # _exptl.entry_id 5KY7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KY7 _cell.length_a 51.89 _cell.length_b 66.44 _cell.length_c 108.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KY7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 43 1_555 A SG CYS 16 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 102 A CYS 131 1_555 A SG CYS 116 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 225 A CYS 254 1_555 A SG CYS 259 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 243 A CYS 272 1_555 A SG CYS 330 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 5 B CYS 5 1_555 B SG CYS 16 B CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 10 B CYS 10 1_555 B SG CYS 25 B CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 27 B CYS 27 1_555 B SG CYS 36 B CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 38 A ASN 67 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 136 A ASN 165 1_555 D C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 B OG SER 7 B SER 7 1_555 F C1 BGC . B BGC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KY7 _atom_sites.fract_transf_matrix[1][1] 0.019272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009228 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 401 401 NAG NAG . D 3 NAG A 1 402 402 NAG NAG . E 4 GDP A 1 403 1 GDP GDP . F 5 BGC B 1 1001 1001 BGC GLC . G 6 HOH A 1 501 251 HOH HOH . G 6 HOH A 2 502 186 HOH HOH . G 6 HOH A 3 503 181 HOH HOH . G 6 HOH A 4 504 176 HOH HOH . G 6 HOH A 5 505 195 HOH HOH . G 6 HOH A 6 506 94 HOH HOH . G 6 HOH A 7 507 207 HOH HOH . G 6 HOH A 8 508 184 HOH HOH . G 6 HOH A 9 509 246 HOH HOH . G 6 HOH A 10 510 150 HOH HOH . G 6 HOH A 11 511 189 HOH HOH . G 6 HOH A 12 512 190 HOH HOH . G 6 HOH A 13 513 254 HOH HOH . G 6 HOH A 14 514 51 HOH HOH . G 6 HOH A 15 515 2 HOH HOH . G 6 HOH A 16 516 4 HOH HOH . G 6 HOH A 17 517 298 HOH HOH . G 6 HOH A 18 518 82 HOH HOH . G 6 HOH A 19 519 220 HOH HOH . G 6 HOH A 20 520 179 HOH HOH . G 6 HOH A 21 521 262 HOH HOH . G 6 HOH A 22 522 166 HOH HOH . G 6 HOH A 23 523 192 HOH HOH . G 6 HOH A 24 524 40 HOH HOH . G 6 HOH A 25 525 148 HOH HOH . G 6 HOH A 26 526 114 HOH HOH . G 6 HOH A 27 527 74 HOH HOH . G 6 HOH A 28 528 83 HOH HOH . G 6 HOH A 29 529 230 HOH HOH . G 6 HOH A 30 530 90 HOH HOH . G 6 HOH A 31 531 299 HOH HOH . G 6 HOH A 32 532 187 HOH HOH . G 6 HOH A 33 533 188 HOH HOH . G 6 HOH A 34 534 209 HOH HOH . G 6 HOH A 35 535 185 HOH HOH . G 6 HOH A 36 536 66 HOH HOH . G 6 HOH A 37 537 38 HOH HOH . G 6 HOH A 38 538 286 HOH HOH . G 6 HOH A 39 539 120 HOH HOH . G 6 HOH A 40 540 87 HOH HOH . G 6 HOH A 41 541 37 HOH HOH . G 6 HOH A 42 542 28 HOH HOH . G 6 HOH A 43 543 80 HOH HOH . G 6 HOH A 44 544 23 HOH HOH . G 6 HOH A 45 545 113 HOH HOH . G 6 HOH A 46 546 55 HOH HOH . G 6 HOH A 47 547 10 HOH HOH . G 6 HOH A 48 548 103 HOH HOH . G 6 HOH A 49 549 88 HOH HOH . G 6 HOH A 50 550 30 HOH HOH . G 6 HOH A 51 551 59 HOH HOH . G 6 HOH A 52 552 284 HOH HOH . G 6 HOH A 53 553 3 HOH HOH . G 6 HOH A 54 554 171 HOH HOH . G 6 HOH A 55 555 11 HOH HOH . G 6 HOH A 56 556 43 HOH HOH . G 6 HOH A 57 557 50 HOH HOH . G 6 HOH A 58 558 139 HOH HOH . G 6 HOH A 59 559 24 HOH HOH . G 6 HOH A 60 560 289 HOH HOH . G 6 HOH A 61 561 48 HOH HOH . G 6 HOH A 62 562 323 HOH HOH . G 6 HOH A 63 563 177 HOH HOH . G 6 HOH A 64 564 17 HOH HOH . G 6 HOH A 65 565 41 HOH HOH . G 6 HOH A 66 566 86 HOH HOH . G 6 HOH A 67 567 236 HOH HOH . G 6 HOH A 68 568 16 HOH HOH . G 6 HOH A 69 569 7 HOH HOH . G 6 HOH A 70 570 46 HOH HOH . G 6 HOH A 71 571 260 HOH HOH . G 6 HOH A 72 572 75 HOH HOH . G 6 HOH A 73 573 144 HOH HOH . G 6 HOH A 74 574 293 HOH HOH . G 6 HOH A 75 575 296 HOH HOH . G 6 HOH A 76 576 267 HOH HOH . G 6 HOH A 77 577 270 HOH HOH . G 6 HOH A 78 578 22 HOH HOH . G 6 HOH A 79 579 18 HOH HOH . G 6 HOH A 80 580 224 HOH HOH . G 6 HOH A 81 581 194 HOH HOH . G 6 HOH A 82 582 53 HOH HOH . G 6 HOH A 83 583 231 HOH HOH . G 6 HOH A 84 584 160 HOH HOH . G 6 HOH A 85 585 169 HOH HOH . G 6 HOH A 86 586 14 HOH HOH . G 6 HOH A 87 587 167 HOH HOH . G 6 HOH A 88 588 316 HOH HOH . G 6 HOH A 89 589 191 HOH HOH . G 6 HOH A 90 590 6 HOH HOH . G 6 HOH A 91 591 131 HOH HOH . G 6 HOH A 92 592 102 HOH HOH . G 6 HOH A 93 593 137 HOH HOH . G 6 HOH A 94 594 261 HOH HOH . G 6 HOH A 95 595 313 HOH HOH . G 6 HOH A 96 596 158 HOH HOH . G 6 HOH A 97 597 136 HOH HOH . G 6 HOH A 98 598 27 HOH HOH . G 6 HOH A 99 599 266 HOH HOH . G 6 HOH A 100 600 29 HOH HOH . G 6 HOH A 101 601 129 HOH HOH . G 6 HOH A 102 602 203 HOH HOH . G 6 HOH A 103 603 61 HOH HOH . G 6 HOH A 104 604 213 HOH HOH . G 6 HOH A 105 605 159 HOH HOH . G 6 HOH A 106 606 180 HOH HOH . G 6 HOH A 107 607 205 HOH HOH . G 6 HOH A 108 608 138 HOH HOH . G 6 HOH A 109 609 67 HOH HOH . G 6 HOH A 110 610 135 HOH HOH . G 6 HOH A 111 611 64 HOH HOH . G 6 HOH A 112 612 54 HOH HOH . G 6 HOH A 113 613 133 HOH HOH . G 6 HOH A 114 614 173 HOH HOH . G 6 HOH A 115 615 223 HOH HOH . G 6 HOH A 116 616 1 HOH HOH . G 6 HOH A 117 617 13 HOH HOH . G 6 HOH A 118 618 12 HOH HOH . G 6 HOH A 119 619 31 HOH HOH . G 6 HOH A 120 620 110 HOH HOH . G 6 HOH A 121 621 69 HOH HOH . G 6 HOH A 122 622 221 HOH HOH . G 6 HOH A 123 623 255 HOH HOH . G 6 HOH A 124 624 33 HOH HOH . G 6 HOH A 125 625 65 HOH HOH . G 6 HOH A 126 626 204 HOH HOH . G 6 HOH A 127 627 147 HOH HOH . G 6 HOH A 128 628 20 HOH HOH . G 6 HOH A 129 629 100 HOH HOH . G 6 HOH A 130 630 154 HOH HOH . G 6 HOH A 131 631 99 HOH HOH . G 6 HOH A 132 632 212 HOH HOH . G 6 HOH A 133 633 115 HOH HOH . G 6 HOH A 134 634 9 HOH HOH . G 6 HOH A 135 635 63 HOH HOH . G 6 HOH A 136 636 81 HOH HOH . G 6 HOH A 137 637 182 HOH HOH . G 6 HOH A 138 638 318 HOH HOH . G 6 HOH A 139 639 321 HOH HOH . G 6 HOH A 140 640 78 HOH HOH . G 6 HOH A 141 641 174 HOH HOH . G 6 HOH A 142 642 285 HOH HOH . G 6 HOH A 143 643 170 HOH HOH . G 6 HOH A 144 644 112 HOH HOH . G 6 HOH A 145 645 52 HOH HOH . G 6 HOH A 146 646 288 HOH HOH . G 6 HOH A 147 647 101 HOH HOH . G 6 HOH A 148 648 237 HOH HOH . G 6 HOH A 149 649 155 HOH HOH . G 6 HOH A 150 650 238 HOH HOH . G 6 HOH A 151 651 57 HOH HOH . G 6 HOH A 152 652 15 HOH HOH . G 6 HOH A 153 653 105 HOH HOH . G 6 HOH A 154 654 104 HOH HOH . G 6 HOH A 155 655 252 HOH HOH . G 6 HOH A 156 656 85 HOH HOH . G 6 HOH A 157 657 92 HOH HOH . G 6 HOH A 158 658 239 HOH HOH . G 6 HOH A 159 659 39 HOH HOH . G 6 HOH A 160 660 125 HOH HOH . G 6 HOH A 161 661 314 HOH HOH . G 6 HOH A 162 662 132 HOH HOH . G 6 HOH A 163 663 229 HOH HOH . G 6 HOH A 164 664 281 HOH HOH . G 6 HOH A 165 665 202 HOH HOH . G 6 HOH A 166 666 309 HOH HOH . G 6 HOH A 167 667 25 HOH HOH . G 6 HOH A 168 668 322 HOH HOH . G 6 HOH A 169 669 152 HOH HOH . G 6 HOH A 170 670 60 HOH HOH . G 6 HOH A 171 671 77 HOH HOH . G 6 HOH A 172 672 253 HOH HOH . G 6 HOH A 173 673 97 HOH HOH . G 6 HOH A 174 674 328 HOH HOH . G 6 HOH A 175 675 306 HOH HOH . G 6 HOH A 176 676 326 HOH HOH . G 6 HOH A 177 677 134 HOH HOH . G 6 HOH A 178 678 91 HOH HOH . G 6 HOH A 179 679 89 HOH HOH . G 6 HOH A 180 680 117 HOH HOH . G 6 HOH A 181 681 168 HOH HOH . G 6 HOH A 182 682 123 HOH HOH . G 6 HOH A 183 683 228 HOH HOH . G 6 HOH A 184 684 208 HOH HOH . G 6 HOH A 185 685 47 HOH HOH . G 6 HOH A 186 686 42 HOH HOH . G 6 HOH A 187 687 108 HOH HOH . G 6 HOH A 188 688 302 HOH HOH . G 6 HOH A 189 689 79 HOH HOH . G 6 HOH A 190 690 76 HOH HOH . G 6 HOH A 191 691 32 HOH HOH . G 6 HOH A 192 692 164 HOH HOH . G 6 HOH A 193 693 290 HOH HOH . G 6 HOH A 194 694 163 HOH HOH . G 6 HOH A 195 695 109 HOH HOH . G 6 HOH A 196 696 44 HOH HOH . G 6 HOH A 197 697 200 HOH HOH . G 6 HOH A 198 698 227 HOH HOH . G 6 HOH A 199 699 268 HOH HOH . G 6 HOH A 200 700 121 HOH HOH . G 6 HOH A 201 701 156 HOH HOH . G 6 HOH A 202 702 73 HOH HOH . G 6 HOH A 203 703 165 HOH HOH . G 6 HOH A 204 704 56 HOH HOH . G 6 HOH A 205 705 172 HOH HOH . G 6 HOH A 206 706 58 HOH HOH . G 6 HOH A 207 707 49 HOH HOH . G 6 HOH A 208 708 300 HOH HOH . G 6 HOH A 209 709 96 HOH HOH . G 6 HOH A 210 710 243 HOH HOH . G 6 HOH A 211 711 315 HOH HOH . G 6 HOH A 212 712 319 HOH HOH . G 6 HOH A 213 713 199 HOH HOH . G 6 HOH A 214 714 34 HOH HOH . G 6 HOH A 215 715 126 HOH HOH . G 6 HOH A 216 716 106 HOH HOH . G 6 HOH A 217 717 26 HOH HOH . G 6 HOH A 218 718 211 HOH HOH . G 6 HOH A 219 719 127 HOH HOH . G 6 HOH A 220 720 291 HOH HOH . G 6 HOH A 221 721 282 HOH HOH . G 6 HOH A 222 722 219 HOH HOH . G 6 HOH A 223 723 307 HOH HOH . G 6 HOH A 224 724 19 HOH HOH . G 6 HOH A 225 725 118 HOH HOH . G 6 HOH A 226 726 217 HOH HOH . G 6 HOH A 227 727 161 HOH HOH . G 6 HOH A 228 728 214 HOH HOH . G 6 HOH A 229 729 162 HOH HOH . G 6 HOH A 230 730 259 HOH HOH . G 6 HOH A 231 731 233 HOH HOH . G 6 HOH A 232 732 130 HOH HOH . G 6 HOH A 233 733 140 HOH HOH . G 6 HOH A 234 734 317 HOH HOH . G 6 HOH A 235 735 274 HOH HOH . G 6 HOH A 236 736 275 HOH HOH . G 6 HOH A 237 737 308 HOH HOH . G 6 HOH A 238 738 198 HOH HOH . G 6 HOH A 239 739 305 HOH HOH . G 6 HOH A 240 740 206 HOH HOH . G 6 HOH A 241 741 149 HOH HOH . G 6 HOH A 242 742 153 HOH HOH . G 6 HOH A 243 743 287 HOH HOH . G 6 HOH A 244 744 201 HOH HOH . G 6 HOH A 245 745 303 HOH HOH . G 6 HOH A 246 746 272 HOH HOH . G 6 HOH A 247 747 269 HOH HOH . G 6 HOH A 248 748 5 HOH HOH . G 6 HOH A 249 749 232 HOH HOH . G 6 HOH A 250 750 226 HOH HOH . G 6 HOH A 251 751 297 HOH HOH . G 6 HOH A 252 752 116 HOH HOH . G 6 HOH A 253 753 283 HOH HOH . G 6 HOH A 254 754 234 HOH HOH . G 6 HOH A 255 755 98 HOH HOH . G 6 HOH A 256 756 84 HOH HOH . G 6 HOH A 257 757 128 HOH HOH . G 6 HOH A 258 758 277 HOH HOH . G 6 HOH A 259 759 250 HOH HOH . G 6 HOH A 260 760 71 HOH HOH . G 6 HOH A 261 761 225 HOH HOH . G 6 HOH A 262 762 95 HOH HOH . G 6 HOH A 263 763 210 HOH HOH . G 6 HOH A 264 764 143 HOH HOH . G 6 HOH A 265 765 216 HOH HOH . G 6 HOH A 266 766 8 HOH HOH . G 6 HOH A 267 767 256 HOH HOH . G 6 HOH A 268 768 62 HOH HOH . G 6 HOH A 269 769 146 HOH HOH . G 6 HOH A 270 770 35 HOH HOH . G 6 HOH A 271 771 145 HOH HOH . G 6 HOH A 272 772 72 HOH HOH . G 6 HOH A 273 773 141 HOH HOH . G 6 HOH A 274 774 178 HOH HOH . G 6 HOH A 275 775 301 HOH HOH . G 6 HOH A 276 776 175 HOH HOH . G 6 HOH A 277 777 258 HOH HOH . G 6 HOH A 278 778 196 HOH HOH . G 6 HOH A 279 779 244 HOH HOH . G 6 HOH A 280 780 304 HOH HOH . G 6 HOH A 281 781 218 HOH HOH . G 6 HOH A 282 782 327 HOH HOH . G 6 HOH A 283 783 235 HOH HOH . G 6 HOH A 284 784 271 HOH HOH . G 6 HOH A 285 785 142 HOH HOH . G 6 HOH A 286 786 273 HOH HOH . G 6 HOH A 287 787 119 HOH HOH . G 6 HOH A 288 788 111 HOH HOH . G 6 HOH A 289 789 157 HOH HOH . G 6 HOH A 290 790 151 HOH HOH . G 6 HOH A 291 791 215 HOH HOH . G 6 HOH A 292 792 312 HOH HOH . G 6 HOH A 293 793 264 HOH HOH . G 6 HOH A 294 794 242 HOH HOH . G 6 HOH A 295 795 222 HOH HOH . G 6 HOH A 296 796 311 HOH HOH . H 6 HOH B 1 1101 295 HOH HOH . H 6 HOH B 2 1102 325 HOH HOH . H 6 HOH B 3 1103 245 HOH HOH . H 6 HOH B 4 1104 70 HOH HOH . H 6 HOH B 5 1105 122 HOH HOH . H 6 HOH B 6 1106 107 HOH HOH . H 6 HOH B 7 1107 21 HOH HOH . H 6 HOH B 8 1108 124 HOH HOH . H 6 HOH B 9 1109 93 HOH HOH . H 6 HOH B 10 1110 45 HOH HOH . H 6 HOH B 11 1111 197 HOH HOH . H 6 HOH B 12 1112 193 HOH HOH . H 6 HOH B 13 1113 68 HOH HOH . H 6 HOH B 14 1114 324 HOH HOH . H 6 HOH B 15 1115 276 HOH HOH . H 6 HOH B 16 1116 36 HOH HOH . H 6 HOH B 17 1117 278 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . E 4 13.345 30.868 6.473 1 22.97 ? PB GDP 403 A 1 HETATM 2 O O1B GDP . . . E 4 13.566 29.597 5.691 1 22.3 ? O1B GDP 403 A 1 HETATM 3 O O2B GDP . . . E 4 12.285 31.695 5.756 1 21.14 ? O2B GDP 403 A 1 HETATM 4 O O3B GDP . . . E 4 14.627 31.645 6.614 1 22.5 ? O3B GDP 403 A 1 HETATM 5 O O3A GDP . . . E 4 12.858 30.364 7.91 1 24.13 ? O3A GDP 403 A 1 HETATM 6 P PA GDP . . . E 4 11.709 30.952 8.852 1 25.62 ? PA GDP 403 A 1 HETATM 7 O O1A GDP . . . E 4 11.958 32.369 9.346 1 27.81 ? O1A GDP 403 A 1 HETATM 8 O O2A GDP . . . E 4 11.518 29.943 9.97 1 19.74 ? O2A GDP 403 A 1 HETATM 9 O O5' GDP . . . E 4 10.385 30.92 7.942 1 28.75 ? O5' GDP 403 A 1 HETATM 10 C C5' GDP . . . E 4 10.056 29.725 7.248 1 25.93 ? C5' GDP 403 A 1 HETATM 11 C C4' GDP . . . E 4 8.811 29.153 7.9 1 31.9 ? C4' GDP 403 A 1 HETATM 12 O O4' GDP . . . E 4 8.192 28.227 6.998 1 23.83 ? O4' GDP 403 A 1 HETATM 13 C C3' GDP . . . E 4 9.09 28.366 9.182 1 33.43 ? C3' GDP 403 A 1 HETATM 14 O O3' GDP . . . E 4 9.187 29.146 10.385 1 30.19 ? O3' GDP 403 A 1 HETATM 15 C C2' GDP . . . E 4 7.899 27.44 9.2 1 42.13 ? C2' GDP 403 A 1 HETATM 16 O O2' GDP . . . E 4 6.722 28.113 9.651 1 26.58 ? O2' GDP 403 A 1 HETATM 17 C C1' GDP . . . E 4 7.778 27.08 7.733 1 29.83 ? C1' GDP 403 A 1 HETATM 18 N N9 GDP . . . E 4 8.753 26.017 7.436 1 24.28 ? N9 GDP 403 A 1 HETATM 19 C C8 GDP . . . E 4 9.844 26.152 6.652 1 25.1 ? C8 GDP 403 A 1 HETATM 20 N N7 GDP . . . E 4 10.538 24.993 6.61 1 19.57 ? N7 GDP 403 A 1 HETATM 21 C C5 GDP . . . E 4 9.889 24.129 7.399 1 19.25 ? C5 GDP 403 A 1 HETATM 22 C C6 GDP . . . E 4 10.08 22.734 7.813 1 26.03 ? C6 GDP 403 A 1 HETATM 23 O O6 GDP . . . E 4 11.043 22.048 7.42 1 25.22 ? O6 GDP 403 A 1 HETATM 24 N N1 GDP . . . E 4 9.187 22.212 8.641 1 27.1 ? N1 GDP 403 A 1 HETATM 25 C C2 GDP . . . E 4 8.116 22.867 9.127 1 21.82 ? C2 GDP 403 A 1 HETATM 26 N N2 GDP . . . E 4 7.25 22.231 9.972 1 24.04 ? N2 GDP 403 A 1 HETATM 27 N N3 GDP . . . E 4 7.863 24.161 8.787 1 22.53 ? N3 GDP 403 A 1 HETATM 28 C C4 GDP . . . E 4 8.715 24.803 7.953 1 21.93 ? C4 GDP 403 A 1 HETATM 29 H H4' GDP . . . E 4 8.119 29.975 8.13 1 38.28 ? H4' GDP 403 A 1 HETATM 30 H H3' GDP . . . E 4 10.002 27.77 9.042 1 40.12 ? H3' GDP 403 A 1 HETATM 31 H HO3' GDP . . . E 4 9.36 28.56 11.135 1 36.22 ? HO3' GDP 403 A 1 HETATM 32 H H2' GDP . . . E 4 8.115 26.545 9.8 1 50.56 ? H2' GDP 403 A 1 HETATM 33 H HO2' GDP . . . E 4 6.84 28.388 10.571 1 31.89 ? HO2' GDP 403 A 1 HETATM 34 H H1' GDP . . . E 4 6.75 26.78 7.484 1 35.8 ? H1' GDP 403 A 1 HETATM 35 H H8 GDP . . . E 4 10.109 27.052 6.111 1 30.12 ? H8 GDP 403 A 1 HETATM 36 H HN1 GDP . . . E 4 9.319 21.222 8.931 1 32.52 ? HN1 GDP 403 A 1 HETATM 37 H HN21 GDP . . . E 4 6.448 22.723 10.337 1 28.85 ? HN21 GDP 403 A 1 HETATM 38 H HN22 GDP . . . E 4 7.415 21.269 10.233 1 28.85 ? HN22 GDP 403 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #