data_5KY8 # _model_server_result.job_id zqZiUkpqqLS3c6qTGHB73w _model_server_result.datetime_utc '2024-11-23 01:09:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ky8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5KY8 # _exptl.entry_id 5KY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KY8 _cell.length_a 51.54 _cell.length_b 65.9 _cell.length_c 106.83 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 43 1_555 A SG CYS 16 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 102 A CYS 131 1_555 A SG CYS 116 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 225 A CYS 254 1_555 A SG CYS 259 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 243 A CYS 272 1_555 A SG CYS 330 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 B SG CYS 5 B CYS 456 1_555 B SG CYS 16 B CYS 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? disulf ? disulf6 B SG CYS 10 B CYS 461 1_555 B SG CYS 25 B CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 B SG CYS 27 B CYS 478 1_555 B SG CYS 36 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 38 A ASN 67 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale2 B OG SER 7 B SER 458 1_555 E C1 BGC . B BGC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 107 n n PB O2B GDP sing 108 n n PB O3B GDP sing 109 n n PB O3A GDP sing 110 n n O2B HOB2 GDP sing 111 n n O3B HOB3 GDP sing 112 n n O3A PA GDP sing 113 n n PA O1A GDP doub 114 n n PA O2A GDP sing 115 n n PA O5' GDP sing 116 n n O2A HOA2 GDP sing 117 n n O5' C5' GDP sing 118 n n C5' C4' GDP sing 119 n n C5' H5' GDP sing 120 n n C5' "H5''" GDP sing 121 n n C4' O4' GDP sing 122 n n C4' C3' GDP sing 123 n n C4' H4' GDP sing 124 n n O4' C1' GDP sing 125 n n C3' O3' GDP sing 126 n n C3' C2' GDP sing 127 n n C3' H3' GDP sing 128 n n O3' HO3' GDP sing 129 n n C2' O2' GDP sing 130 n n C2' C1' GDP sing 131 n n C2' H2' GDP sing 132 n n O2' HO2' GDP sing 133 n n C1' N9 GDP sing 134 n n C1' H1' GDP sing 135 n n N9 C8 GDP sing 136 n y N9 C4 GDP sing 137 n y C8 N7 GDP doub 138 n y C8 H8 GDP sing 139 n n N7 C5 GDP sing 140 n y C5 C6 GDP sing 141 n n C5 C4 GDP doub 142 n y C6 O6 GDP doub 143 n n C6 N1 GDP sing 144 n n N1 C2 GDP sing 145 n n N1 HN1 GDP sing 146 n n C2 N2 GDP sing 147 n n C2 N3 GDP doub 148 n n N2 HN21 GDP sing 149 n n N2 HN22 GDP sing 150 n n N3 C4 GDP sing 151 n n # _atom_sites.entry_id 5KY8 _atom_sites.fract_transf_matrix[1][1] 0.019402 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009361 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 401 401 NAG NAG . D 4 GDP A 1 402 1 GDP GDP . E 5 BGC B 1 1001 1001 BGC GLC . F 6 HOH A 1 501 107 HOH HOH . F 6 HOH A 2 502 218 HOH HOH . F 6 HOH A 3 503 226 HOH HOH . F 6 HOH A 4 504 122 HOH HOH . F 6 HOH A 5 505 44 HOH HOH . F 6 HOH A 6 506 279 HOH HOH . F 6 HOH A 7 507 88 HOH HOH . F 6 HOH A 8 508 185 HOH HOH . F 6 HOH A 9 509 223 HOH HOH . F 6 HOH A 10 510 224 HOH HOH . F 6 HOH A 11 511 243 HOH HOH . F 6 HOH A 12 512 158 HOH HOH . F 6 HOH A 13 513 217 HOH HOH . F 6 HOH A 14 514 250 HOH HOH . F 6 HOH A 15 515 64 HOH HOH . F 6 HOH A 16 516 4 HOH HOH . F 6 HOH A 17 517 211 HOH HOH . F 6 HOH A 18 518 152 HOH HOH . F 6 HOH A 19 519 102 HOH HOH . F 6 HOH A 20 520 230 HOH HOH . F 6 HOH A 21 521 1 HOH HOH . F 6 HOH A 22 522 259 HOH HOH . F 6 HOH A 23 523 67 HOH HOH . F 6 HOH A 24 524 92 HOH HOH . F 6 HOH A 25 525 32 HOH HOH . F 6 HOH A 26 526 143 HOH HOH . F 6 HOH A 27 527 98 HOH HOH . F 6 HOH A 28 528 255 HOH HOH . F 6 HOH A 29 529 200 HOH HOH . F 6 HOH A 30 530 61 HOH HOH . F 6 HOH A 31 531 41 HOH HOH . F 6 HOH A 32 532 140 HOH HOH . F 6 HOH A 33 533 277 HOH HOH . F 6 HOH A 34 534 19 HOH HOH . F 6 HOH A 35 535 10 HOH HOH . F 6 HOH A 36 536 39 HOH HOH . F 6 HOH A 37 537 209 HOH HOH . F 6 HOH A 38 538 51 HOH HOH . F 6 HOH A 39 539 3 HOH HOH . F 6 HOH A 40 540 225 HOH HOH . F 6 HOH A 41 541 11 HOH HOH . F 6 HOH A 42 542 13 HOH HOH . F 6 HOH A 43 543 273 HOH HOH . F 6 HOH A 44 544 285 HOH HOH . F 6 HOH A 45 545 196 HOH HOH . F 6 HOH A 46 546 278 HOH HOH . F 6 HOH A 47 547 210 HOH HOH . F 6 HOH A 48 548 7 HOH HOH . F 6 HOH A 49 549 81 HOH HOH . F 6 HOH A 50 550 63 HOH HOH . F 6 HOH A 51 551 178 HOH HOH . F 6 HOH A 52 552 23 HOH HOH . F 6 HOH A 53 553 111 HOH HOH . F 6 HOH A 54 554 112 HOH HOH . F 6 HOH A 55 555 54 HOH HOH . F 6 HOH A 56 556 109 HOH HOH . F 6 HOH A 57 557 38 HOH HOH . F 6 HOH A 58 558 76 HOH HOH . F 6 HOH A 59 559 58 HOH HOH . F 6 HOH A 60 560 73 HOH HOH . F 6 HOH A 61 561 26 HOH HOH . F 6 HOH A 62 562 20 HOH HOH . F 6 HOH A 63 563 17 HOH HOH . F 6 HOH A 64 564 65 HOH HOH . F 6 HOH A 65 565 99 HOH HOH . F 6 HOH A 66 566 134 HOH HOH . F 6 HOH A 67 567 116 HOH HOH . F 6 HOH A 68 568 75 HOH HOH . F 6 HOH A 69 569 222 HOH HOH . F 6 HOH A 70 570 52 HOH HOH . F 6 HOH A 71 571 18 HOH HOH . F 6 HOH A 72 572 84 HOH HOH . F 6 HOH A 73 573 85 HOH HOH . F 6 HOH A 74 574 31 HOH HOH . F 6 HOH A 75 575 173 HOH HOH . F 6 HOH A 76 576 36 HOH HOH . F 6 HOH A 77 577 47 HOH HOH . F 6 HOH A 78 578 22 HOH HOH . F 6 HOH A 79 579 114 HOH HOH . F 6 HOH A 80 580 175 HOH HOH . F 6 HOH A 81 581 72 HOH HOH . F 6 HOH A 82 582 103 HOH HOH . F 6 HOH A 83 583 70 HOH HOH . F 6 HOH A 84 584 69 HOH HOH . F 6 HOH A 85 585 87 HOH HOH . F 6 HOH A 86 586 89 HOH HOH . F 6 HOH A 87 587 79 HOH HOH . F 6 HOH A 88 588 201 HOH HOH . F 6 HOH A 89 589 190 HOH HOH . F 6 HOH A 90 590 172 HOH HOH . F 6 HOH A 91 591 212 HOH HOH . F 6 HOH A 92 592 46 HOH HOH . F 6 HOH A 93 593 35 HOH HOH . F 6 HOH A 94 594 5 HOH HOH . F 6 HOH A 95 595 37 HOH HOH . F 6 HOH A 96 596 14 HOH HOH . F 6 HOH A 97 597 135 HOH HOH . F 6 HOH A 98 598 132 HOH HOH . F 6 HOH A 99 599 119 HOH HOH . F 6 HOH A 100 600 34 HOH HOH . F 6 HOH A 101 601 12 HOH HOH . F 6 HOH A 102 602 100 HOH HOH . F 6 HOH A 103 603 24 HOH HOH . F 6 HOH A 104 604 241 HOH HOH . F 6 HOH A 105 605 62 HOH HOH . F 6 HOH A 106 606 171 HOH HOH . F 6 HOH A 107 607 117 HOH HOH . F 6 HOH A 108 608 113 HOH HOH . F 6 HOH A 109 609 153 HOH HOH . F 6 HOH A 110 610 270 HOH HOH . F 6 HOH A 111 611 56 HOH HOH . F 6 HOH A 112 612 94 HOH HOH . F 6 HOH A 113 613 120 HOH HOH . F 6 HOH A 114 614 206 HOH HOH . F 6 HOH A 115 615 125 HOH HOH . F 6 HOH A 116 616 2 HOH HOH . F 6 HOH A 117 617 261 HOH HOH . F 6 HOH A 118 618 208 HOH HOH . F 6 HOH A 119 619 108 HOH HOH . F 6 HOH A 120 620 161 HOH HOH . F 6 HOH A 121 621 234 HOH HOH . F 6 HOH A 122 622 151 HOH HOH . F 6 HOH A 123 623 174 HOH HOH . F 6 HOH A 124 624 71 HOH HOH . F 6 HOH A 125 625 27 HOH HOH . F 6 HOH A 126 626 167 HOH HOH . F 6 HOH A 127 627 121 HOH HOH . F 6 HOH A 128 628 228 HOH HOH . F 6 HOH A 129 629 139 HOH HOH . F 6 HOH A 130 630 60 HOH HOH . F 6 HOH A 131 631 159 HOH HOH . F 6 HOH A 132 632 78 HOH HOH . F 6 HOH A 133 633 213 HOH HOH . F 6 HOH A 134 634 15 HOH HOH . F 6 HOH A 135 635 93 HOH HOH . F 6 HOH A 136 636 130 HOH HOH . F 6 HOH A 137 637 264 HOH HOH . F 6 HOH A 138 638 191 HOH HOH . F 6 HOH A 139 639 183 HOH HOH . F 6 HOH A 140 640 57 HOH HOH . F 6 HOH A 141 641 251 HOH HOH . F 6 HOH A 142 642 214 HOH HOH . F 6 HOH A 143 643 59 HOH HOH . F 6 HOH A 144 644 6 HOH HOH . F 6 HOH A 145 645 267 HOH HOH . F 6 HOH A 146 646 283 HOH HOH . F 6 HOH A 147 647 177 HOH HOH . F 6 HOH A 148 648 16 HOH HOH . F 6 HOH A 149 649 220 HOH HOH . F 6 HOH A 150 650 101 HOH HOH . F 6 HOH A 151 651 160 HOH HOH . F 6 HOH A 152 652 189 HOH HOH . F 6 HOH A 153 653 229 HOH HOH . F 6 HOH A 154 654 157 HOH HOH . F 6 HOH A 155 655 254 HOH HOH . F 6 HOH A 156 656 53 HOH HOH . F 6 HOH A 157 657 207 HOH HOH . F 6 HOH A 158 658 43 HOH HOH . F 6 HOH A 159 659 199 HOH HOH . F 6 HOH A 160 660 30 HOH HOH . F 6 HOH A 161 661 137 HOH HOH . F 6 HOH A 162 662 118 HOH HOH . F 6 HOH A 163 663 215 HOH HOH . F 6 HOH A 164 664 149 HOH HOH . F 6 HOH A 165 665 40 HOH HOH . F 6 HOH A 166 666 83 HOH HOH . F 6 HOH A 167 667 25 HOH HOH . F 6 HOH A 168 668 68 HOH HOH . F 6 HOH A 169 669 236 HOH HOH . F 6 HOH A 170 670 95 HOH HOH . F 6 HOH A 171 671 126 HOH HOH . F 6 HOH A 172 672 48 HOH HOH . F 6 HOH A 173 673 55 HOH HOH . F 6 HOH A 174 674 155 HOH HOH . F 6 HOH A 175 675 141 HOH HOH . F 6 HOH A 176 676 8 HOH HOH . F 6 HOH A 177 677 49 HOH HOH . F 6 HOH A 178 678 97 HOH HOH . F 6 HOH A 179 679 233 HOH HOH . F 6 HOH A 180 680 239 HOH HOH . F 6 HOH A 181 681 74 HOH HOH . F 6 HOH A 182 682 194 HOH HOH . F 6 HOH A 183 683 237 HOH HOH . F 6 HOH A 184 684 80 HOH HOH . F 6 HOH A 185 685 28 HOH HOH . F 6 HOH A 186 686 148 HOH HOH . F 6 HOH A 187 687 150 HOH HOH . F 6 HOH A 188 688 86 HOH HOH . F 6 HOH A 189 689 182 HOH HOH . F 6 HOH A 190 690 145 HOH HOH . F 6 HOH A 191 691 9 HOH HOH . F 6 HOH A 192 692 96 HOH HOH . F 6 HOH A 193 693 110 HOH HOH . F 6 HOH A 194 694 82 HOH HOH . F 6 HOH A 195 695 33 HOH HOH . F 6 HOH A 196 696 202 HOH HOH . F 6 HOH A 197 697 246 HOH HOH . F 6 HOH A 198 698 256 HOH HOH . F 6 HOH A 199 699 77 HOH HOH . F 6 HOH A 200 700 266 HOH HOH . F 6 HOH A 201 701 176 HOH HOH . F 6 HOH A 202 702 180 HOH HOH . F 6 HOH A 203 703 91 HOH HOH . F 6 HOH A 204 704 181 HOH HOH . F 6 HOH A 205 705 186 HOH HOH . F 6 HOH A 206 706 104 HOH HOH . F 6 HOH A 207 707 163 HOH HOH . F 6 HOH A 208 708 129 HOH HOH . F 6 HOH A 209 709 142 HOH HOH . F 6 HOH A 210 710 128 HOH HOH . F 6 HOH A 211 711 227 HOH HOH . F 6 HOH A 212 712 168 HOH HOH . F 6 HOH A 213 713 127 HOH HOH . F 6 HOH A 214 714 271 HOH HOH . F 6 HOH A 215 715 115 HOH HOH . F 6 HOH A 216 716 269 HOH HOH . F 6 HOH A 217 717 262 HOH HOH . F 6 HOH A 218 718 192 HOH HOH . F 6 HOH A 219 719 240 HOH HOH . F 6 HOH A 220 720 257 HOH HOH . F 6 HOH A 221 721 193 HOH HOH . F 6 HOH A 222 722 253 HOH HOH . F 6 HOH A 223 723 50 HOH HOH . F 6 HOH A 224 724 245 HOH HOH . F 6 HOH A 225 725 144 HOH HOH . F 6 HOH A 226 726 156 HOH HOH . F 6 HOH A 227 727 204 HOH HOH . F 6 HOH A 228 728 184 HOH HOH . F 6 HOH A 229 729 263 HOH HOH . F 6 HOH A 230 730 66 HOH HOH . F 6 HOH A 231 731 195 HOH HOH . F 6 HOH A 232 732 197 HOH HOH . F 6 HOH A 233 733 187 HOH HOH . F 6 HOH A 234 734 162 HOH HOH . F 6 HOH A 235 735 188 HOH HOH . F 6 HOH A 236 736 165 HOH HOH . F 6 HOH A 237 737 124 HOH HOH . F 6 HOH A 238 738 169 HOH HOH . F 6 HOH A 239 739 282 HOH HOH . F 6 HOH A 240 740 106 HOH HOH . F 6 HOH A 241 741 170 HOH HOH . F 6 HOH A 242 742 138 HOH HOH . F 6 HOH A 243 743 221 HOH HOH . F 6 HOH A 244 744 147 HOH HOH . F 6 HOH A 245 745 219 HOH HOH . F 6 HOH A 246 746 205 HOH HOH . F 6 HOH A 247 747 235 HOH HOH . F 6 HOH A 248 748 154 HOH HOH . F 6 HOH A 249 749 258 HOH HOH . F 6 HOH A 250 750 268 HOH HOH . F 6 HOH A 251 751 265 HOH HOH . F 6 HOH A 252 752 146 HOH HOH . F 6 HOH A 253 753 136 HOH HOH . F 6 HOH A 254 754 280 HOH HOH . F 6 HOH A 255 755 164 HOH HOH . F 6 HOH A 256 756 166 HOH HOH . F 6 HOH A 257 757 276 HOH HOH . F 6 HOH A 258 758 247 HOH HOH . G 6 HOH B 1 1101 198 HOH HOH . G 6 HOH B 2 1102 133 HOH HOH . G 6 HOH B 3 1103 131 HOH HOH . G 6 HOH B 4 1104 105 HOH HOH . G 6 HOH B 5 1105 123 HOH HOH . G 6 HOH B 6 1106 90 HOH HOH . G 6 HOH B 7 1107 29 HOH HOH . G 6 HOH B 8 1108 45 HOH HOH . G 6 HOH B 9 1109 42 HOH HOH . G 6 HOH B 10 1110 179 HOH HOH . G 6 HOH B 11 1111 231 HOH HOH . G 6 HOH B 12 1112 216 HOH HOH . G 6 HOH B 13 1113 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . D 4 14.319 31.454 5.098 1 33.31 ? PB GDP 402 A 1 HETATM 2 O O1B GDP . . . D 4 13.259 32.224 4.345 1 33.72 ? O1B GDP 402 A 1 HETATM 3 O O2B GDP . . . D 4 14.545 30.119 4.43 1 31.5 ? O2B GDP 402 A 1 HETATM 4 O O3B GDP . . . D 4 15.608 32.246 5.104 1 30.96 ? O3B GDP 402 A 1 HETATM 5 O O3A GDP . . . D 4 13.92 31.128 6.621 1 42.49 ? O3A GDP 402 A 1 HETATM 6 P PA GDP . . . D 4 12.628 31.734 7.356 1 48.61 ? PA GDP 402 A 1 HETATM 7 O O1A GDP . . . D 4 12.809 33.198 7.684 1 50.92 ? O1A GDP 402 A 1 HETATM 8 O O2A GDP . . . D 4 12.335 30.93 8.603 1 43.68 ? O2A GDP 402 A 1 HETATM 9 O O5' GDP . . . D 4 11.482 31.495 6.254 1 55.64 ? O5' GDP 402 A 1 HETATM 10 C C5' GDP . . . D 4 11.203 30.154 5.868 1 59.16 ? C5' GDP 402 A 1 HETATM 11 C C4' GDP . . . D 4 9.881 29.776 6.515 1 61.03 ? C4' GDP 402 A 1 HETATM 12 O O4' GDP . . . D 4 9.184 28.815 5.716 1 62.22 ? O4' GDP 402 A 1 HETATM 13 C C3' GDP . . . D 4 10.06 29.179 7.904 1 61.48 ? C3' GDP 402 A 1 HETATM 14 O O3' GDP . . . D 4 10.004 30.167 8.933 1 61.57 ? O3' GDP 402 A 1 HETATM 15 C C2' GDP . . . D 4 8.91 28.208 7.996 1 62.44 ? C2' GDP 402 A 1 HETATM 16 O O2' GDP . . . D 4 7.709 28.852 8.431 1 61.45 ? O2' GDP 402 A 1 HETATM 17 C C1' GDP . . . D 4 8.786 27.738 6.56 1 64 ? C1' GDP 402 A 1 HETATM 18 N N9 GDP . . . D 4 9.754 26.646 6.356 1 66.73 ? N9 GDP 402 A 1 HETATM 19 C C8 GDP . . . D 4 10.879 26.703 5.615 1 67.54 ? C8 GDP 402 A 1 HETATM 20 N N7 GDP . . . D 4 11.54 25.522 5.668 1 67.44 ? N7 GDP 402 A 1 HETATM 21 C C5 GDP . . . D 4 10.834 24.712 6.464 1 69.46 ? C5 GDP 402 A 1 HETATM 22 C C6 GDP . . . D 4 10.961 23.333 6.951 1 72.66 ? C6 GDP 402 A 1 HETATM 23 O O6 GDP . . . D 4 11.917 22.599 6.629 1 74.21 ? O6 GDP 402 A 1 HETATM 24 N N1 GDP . . . D 4 10.01 22.875 7.762 1 72.52 ? N1 GDP 402 A 1 HETATM 25 C C2 GDP . . . D 4 8.942 23.603 8.16 1 71.01 ? C2 GDP 402 A 1 HETATM 26 N N2 GDP . . . D 4 8.015 23.057 8.992 1 71 ? N2 GDP 402 A 1 HETATM 27 N N3 GDP . . . D 4 8.762 24.88 7.75 1 69.19 ? N3 GDP 402 A 1 HETATM 28 C C4 GDP . . . D 4 9.661 25.456 6.923 1 68.26 ? C4 GDP 402 A 1 HETATM 29 H H4' GDP . . . D 4 9.271 30.685 6.607 1 73.23 ? H4' GDP 402 A 1 HETATM 30 H H3' GDP . . . D 4 11.009 28.627 7.946 1 73.78 ? H3' GDP 402 A 1 HETATM 31 H HO3' GDP . . . D 4 10.125 29.744 9.794 1 73.88 ? HO3' GDP 402 A 1 HETATM 32 H H2' GDP . . . D 4 9.176 27.365 8.65 1 74.92 ? H2' GDP 402 A 1 HETATM 33 H HO2' GDP . . . D 4 7.834 29.196 9.326 1 73.74 ? HO2' GDP 402 A 1 HETATM 34 H H1' GDP . . . D 4 7.758 27.414 6.347 1 76.8 ? H1' GDP 402 A 1 HETATM 35 H H8 GDP . . . D 4 11.2 27.566 5.044 1 81.05 ? H8 GDP 402 A 1 HETATM 36 H HN1 GDP . . . D 4 10.093 21.899 8.111 1 87.02 ? HN1 GDP 402 A 1 HETATM 37 H HN21 GDP . . . D 4 7.218 23.604 9.287 1 85.19 ? HN21 GDP 402 A 1 HETATM 38 H HN22 GDP . . . D 4 8.122 22.106 9.315 1 85.19 ? HN22 GDP 402 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 38 #