data_5KYA
#
_model_server_result.job_id            TZRvrkLk_AqhP1tV4Rh5Fg 
_model_server_result.datetime_utc      '2024-11-26 21:39:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kya 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    5KYA 
#
_exptl.entry_id    5KYA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              481.491 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[2-[(6~{R})-2-(3-methylsulfonylphenyl)-6-propan-2-yl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl]-4-(trifluoromethyl)pyrimidin-5-yl]methanol' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KYA 
_cell.length_a            68.439 
_cell.length_b            101.089 
_cell.length_c            143.58 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KYA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G,H 1 1 
C,D,F,I,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C21 H22 F3 N5 O3 S' 
_chem_comp.formula_weight    481.491 
_chem_comp.id                6Y4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[2-[(6~{R})-2-(3-methylsulfonylphenyl)-6-propan-2-yl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl]-4-(trifluoromethyl)pyrimidin-5-yl]methanol' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 6Y4 sing 1 n n 
C1 C2 6Y4 sing 2 n n 
F1 C21 6Y4 sing 3 n n 
F3 C21 6Y4 sing 4 n n 
C2 C5 6Y4 doub 5 n y 
C2 C3 6Y4 sing 6 n y 
C21 C3 6Y4 sing 7 n n 
C21 F2 6Y4 sing 8 n n 
C5 N2 6Y4 sing 9 n y 
C3 N1 6Y4 doub 10 n y 
N2 C4 6Y4 doub 11 n y 
N1 C4 6Y4 sing 12 n y 
C4 N3 6Y4 sing 13 n n 
N3 C10 6Y4 sing 14 n n 
N3 C6 6Y4 sing 15 n n 
C10 C11 6Y4 sing 16 n n 
C10 C9 6Y4 sing 17 n n 
C11 C12 6Y4 sing 18 n n 
C11 C13 6Y4 sing 19 n n 
C6 C7 6Y4 sing 20 n n 
C9 C7 6Y4 sing 21 n y 
C9 N5 6Y4 doub 22 n y 
C7 C8 6Y4 doub 23 n y 
N5 N4 6Y4 sing 24 n y 
C8 N4 6Y4 sing 25 n y 
N4 C14 6Y4 sing 26 n n 
C14 C20 6Y4 doub 27 n y 
C14 C15 6Y4 sing 28 n y 
C20 C19 6Y4 sing 29 n y 
C15 C16 6Y4 doub 30 n y 
C19 C18 6Y4 doub 31 n y 
C16 C18 6Y4 sing 32 n y 
C16 S 6Y4 sing 33 n n 
C17 S 6Y4 sing 34 n n 
O3 S 6Y4 doub 35 n n 
S O2 6Y4 doub 36 n n 
C8 H1 6Y4 sing 37 n n 
C5 H2 6Y4 sing 38 n n 
C6 H3 6Y4 sing 39 n n 
C6 H4 6Y4 sing 40 n n 
C1 H5 6Y4 sing 41 n n 
C1 H6 6Y4 sing 42 n n 
C13 H7 6Y4 sing 43 n n 
C13 H8 6Y4 sing 44 n n 
C13 H9 6Y4 sing 45 n n 
C15 H10 6Y4 sing 46 n n 
C12 H11 6Y4 sing 47 n n 
C12 H12 6Y4 sing 48 n n 
C12 H13 6Y4 sing 49 n n 
C11 H14 6Y4 sing 50 n n 
C10 H15 6Y4 sing 51 n n 
C17 H16 6Y4 sing 52 n n 
C17 H17 6Y4 sing 53 n n 
C17 H18 6Y4 sing 54 n n 
C20 H19 6Y4 sing 55 n n 
C19 H20 6Y4 sing 56 n n 
C18 H21 6Y4 sing 57 n n 
O1 H22 6Y4 sing 58 n n 
#
_atom_sites.entry_id                     5KYA 
_atom_sites.fract_transf_matrix[1][1]    0.014612 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009892 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006965 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 6Y4 A 1 501 1 6Y4 413 . 
F 3 6Y4 E 1 501 1 6Y4 413 . 
G 4 HOH A 1 601 12 HOH HOH . 
G 4 HOH A 2 602 10 HOH HOH . 
G 4 HOH A 3 603 5 HOH HOH . 
G 4 HOH A 4 604 13 HOH HOH . 
G 4 HOH A 5 605 8 HOH HOH . 
G 4 HOH A 6 606 1 HOH HOH . 
G 4 HOH A 7 607 4 HOH HOH . 
H 4 HOH B 1 601 14 HOH HOH . 
H 4 HOH B 2 602 6 HOH HOH . 
I 4 HOH E 1 601 2 HOH HOH . 
I 4 HOH E 2 602 11 HOH HOH . 
I 4 HOH E 3 603 7 HOH HOH . 
I 4 HOH E 4 604 3 HOH HOH . 
J 4 HOH F 1 601 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N4 6Y4 . . . F 3 -6.206 -6.166 23.617 1 34.55 ? N4 6Y4 501 E 1 
HETATM 2 C C8 6Y4 . . . F 3 -6.42 -7.492 23.433 1 37.62 ? C8 6Y4 501 E 1 
HETATM 3 N N3 6Y4 . . . F 3 -5.115 -8.055 20.106 1 41.77 ? N3 6Y4 501 E 1 
HETATM 4 C C5 6Y4 . . . F 3 -4.626 -7.481 16.629 1 57.85 ? C5 6Y4 501 E 1 
HETATM 5 C C4 6Y4 . . . F 3 -5.11 -8.372 18.787 1 46.29 ? C4 6Y4 501 E 1 
HETATM 6 C C3 6Y4 . . . F 3 -5.595 -9.652 17.008 1 60.9 ? C3 6Y4 501 E 1 
HETATM 7 C C6 6Y4 . . . F 3 -5.656 -8.882 21.211 1 37.74 ? C6 6Y4 501 E 1 
HETATM 8 C C7 6Y4 . . . F 3 -5.883 -7.752 22.179 1 35.86 ? C7 6Y4 501 E 1 
HETATM 9 C C2 6Y4 . . . F 3 -5.095 -8.63 16.045 1 56.36 ? C2 6Y4 501 E 1 
HETATM 10 C C1 6Y4 . . . F 3 -5.064 -8.771 14.539 1 55.97 ? C1 6Y4 501 E 1 
HETATM 11 N N2 6Y4 . . . F 3 -4.66 -7.401 17.96 1 54.99 ? N2 6Y4 501 E 1 
HETATM 12 N N1 6Y4 . . . F 3 -5.598 -9.519 18.356 1 49.09 ? N1 6Y4 501 E 1 
HETATM 13 C C9 6Y4 . . . F 3 -5.346 -6.523 21.696 1 33.83 ? C9 6Y4 501 E 1 
HETATM 14 C C14 6Y4 . . . F 3 -6.571 -5.479 24.695 1 31.33 ? C14 6Y4 501 E 1 
HETATM 15 C C13 6Y4 . . . F 3 -2.492 -7.273 21.573 1 37.18 ? C13 6Y4 501 E 1 
HETATM 16 O O3 6Y4 . . . F 3 -10.092 -5.343 27.571 1 44.5 ? O3 6Y4 501 E 1 
HETATM 17 C C15 6Y4 . . . F 3 -7.439 -6.009 25.626 1 33.88 ? C15 6Y4 501 E 1 
HETATM 18 C C12 6Y4 . . . F 3 -2.879 -5.032 20.44 1 40.57 ? C12 6Y4 501 E 1 
HETATM 19 C C11 6Y4 . . . F 3 -3.205 -6.536 20.424 1 38.48 ? C11 6Y4 501 E 1 
HETATM 20 C C10 6Y4 . . . F 3 -4.729 -6.676 20.409 1 37.29 ? C10 6Y4 501 E 1 
HETATM 21 C C16 6Y4 . . . F 3 -7.833 -5.36 26.793 1 38.04 ? C16 6Y4 501 E 1 
HETATM 22 C C17 6Y4 . . . F 3 -9.256 -7.59 27.398 1 39.49 ? C17 6Y4 501 E 1 
HETATM 23 C C21 6Y4 . . . F 3 -6.101 -10.915 16.509 1 67.27 ? C21 6Y4 501 E 1 
HETATM 24 C C20 6Y4 . . . F 3 -6.116 -4.195 24.962 1 31.56 ? C20 6Y4 501 E 1 
HETATM 25 C C19 6Y4 . . . F 3 -6.479 -3.523 26.114 1 32.99 ? C19 6Y4 501 E 1 
HETATM 26 C C18 6Y4 . . . F 3 -7.345 -4.085 27.046 1 34.57 ? C18 6Y4 501 E 1 
HETATM 27 F F3 6Y4 . . . F 3 -5.093 -11.45 15.835 1 72.01 ? F3 6Y4 501 E 1 
HETATM 28 F F1 6Y4 . . . F 3 -7.155 -10.624 15.762 1 71.7 ? F1 6Y4 501 E 1 
HETATM 29 F F2 6Y4 . . . F 3 -6.375 -11.579 17.619 1 68.48 ? F2 6Y4 501 E 1 
HETATM 30 O O1 6Y4 . . . F 3 -3.825 -8.202 14.049 1 65.25 ? O1 6Y4 501 E 1 
HETATM 31 N N5 6Y4 . . . F 3 -5.515 -5.536 22.578 1 35.99 ? N5 6Y4 501 E 1 
HETATM 32 S S 6Y4 . . . F 3 -8.87 -6.064 27.81 1 39.29 ? S 6Y4 501 E 1 
HETATM 33 O O2 6Y4 . . . F 3 -8.421 -6.068 29.164 1 36.21 ? O2 6Y4 501 E 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           236 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#